LIME1

General Information

Gene Name       : LIME1
Gene ID             : ENSG00000203896.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LIME1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LIME1ENSG00000203896.90.200.740.47ENCSR000AEF
HepG2LIME1ENSG00000203896.917.390.999.19ENCSR985KAT
K562LIME1ENSG00000203896.91.690.561.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LIME1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LIME1 RNA is bound by 29 proteins.  







eCLIP assay for LIME1 is not avaliable on ENCORE database.





29 proteins are bound to LIME1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr206237034662370401+3'-UTR,intron-Distal,intron-Proximal4.0361511.35136HepG2LARP4
chr206236883562368903+3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.9620620.05715HepG2SF3B4
chr206236886162368925+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.599863.00221HepG2U2AF1
chr206237018962370290+3'-UTR,CDS,intron-Distal,intron-Proximal3.8556722.48251HepG2LARP4
chr206237029062370346+3'-UTR,intron-Distal,intron-Proximal3.5105314.13076HepG2LARP4
chr206236880362368927+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.880179.05957K562BUD13
chr206236882462368914+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.6267120.84527K562SF3B4
chr206236886762368929+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.108824.79983HepG2U2AF2
chr206237033262370429+3'-UTR,intron-Distal,intron-Proximal3.262209.01951HepG2NKRF
chr206237027562370358+3'-UTR,intron-Distal,intron-Proximal3.828865.38982HepG2PRPF4
chr206236792662368023+3'-UTR,5'-UTR,intron-Distal4.928527.75663K562CSTF2T
chr206236864762368681+5'-UTR,intron-Distal4.111745.45748HepG2XRN2
chr206236863262368681+5'-UTR,intron-Distal3.878065.10213HepG2NKRF
chr206236790662368024+3'-UTR,5'-UTR,intron-Distal3.558955.58900K562MTPAP
chr206236881762368835+5'-UTR,intron-Distal,intron-Proximal4.239463.05889HepG2SF3B4
chr206236863862368679+5'-UTR,intron-Distal3.815503.24593HepG2XPO5
chr206236858462368664+5'-UTR,intron-Distal6.5434819.56321K562XRN2
chr206236789862368011+3'-UTR,5'-UTR,intron-Distal4.040328.17821HepG2PRPF4
chr206236788962368007+3'-UTR,5'-UTR,intron-Distal3.433495.29595K562GTF2F1
chr206236751262367655+3'-UTR,5'-UTR,intron-Distal3.225525.51079K562BUD13
chr206236792062368016+3'-UTR,5'-UTR,intron-Distal4.450303.01428K562UCHL5
chr206236788762368015+3'-UTR,5'-UTR,intron-Distal3.103107.22537HepG2FAM120A
chr206236793162368001+3'-UTR,5'-UTR,intron-Distal4.663255.79396K562DDX24
chr206236789962368002+3'-UTR,5'-UTR,intron-Distal3.122855.50589HepG2XRN2
chr206236997262370026+3'-UTR,CDS,intron-Distal3.879026.04895HepG2LARP4
chr206236969562369765+3'-UTR,CDS,intron-Proximal3.830164.52386HepG2PABPN1
chr206237003962370096+3'-UTR,CDS,intron-Distal4.342915.61940HepG2SRSF1
chr206236894662368999+3'-UTR,CDS,intron-Distal4.3018510.43162HepG2PPIG
chr206236921762369240+3'-UTR,CDS3.347416.00907HepG2PPIG
chr206236955062369626+3'-UTR,CDS3.3668012.62157HepG2NCBP2
chr206237014462370245+3'-UTR,CDS,intron-Distal,intron-Proximal3.915674.77549HepG2PABPN1
chr206236968562369759+3'-UTR,CDS,intron-Proximal3.128239.25779HepG2DDX55
chr206236971462369778+3'-UTR,CDS,intron-Proximal3.6094312.27709HepG2DDX3X
chr206236972662369781+3'-UTR,CDS,intron-Proximal3.278413.57490HepG2NKRF
chr206236988062370008+3'-UTR,CDS,intron-Distal,intron-Proximal5.0689914.42760HepG2EFTUD2
chr206236970862369759+3'-UTR,CDS,intron-Proximal3.046015.34396HepG2LARP4
chr206237006762370110+3'-UTR,CDS,intron-Distal4.232037.16588HepG2LARP4
chr206236992962369968+3'-UTR,CDS,intron-Distal,intron-Proximal3.346735.84601HepG2PRPF8
chr206237005262370178+3'-UTR,CDS,intron-Distal,intron-Proximal3.4471611.14441HepG2RPS3
chr206236969862369786+3'-UTR,CDS,intron-Proximal3.100917.92874HepG2RPS3
chr206236981962369917+3'-UTR,CDS,intron-Distal,intron-Proximal3.7394613.52745HepG2PRPF8
chr206236727562367329+3'-UTR,intron-Distal3.692758.74774HepG2PPIG
chr206236986862369946+intron-Distal,intron-Proximal3.686405.09764HepG2NKRF
chr206236752562367628+3'-UTR,intron-Distal3.445394.57350K562RBFOX2
chr206236715462367246+CDS,intron-Distal3.234374.50748HepG2GRWD1
chr206236810062368175+intron-Distal,intron-Proximal4.8582212.11344HepG2XPO5
chr206236729062367366+3'-UTR,intron-Distal4.090623.81597K562RBM15
chr206236726662367315+3'-UTR,CDS,intron-Distal3.676644.02291HepG2GRWD1
chr206236858862368632+intron-Distal3.662755.10213HepG2NKRF
chr206236727962367315+3'-UTR,intron-Distal3.436843.66187K562ZNF622
chr206236861462368636+intron-Distal5.2939510.00934HepG2XRN2
chr206236728562367342+3'-UTR,intron-Distal3.111163.70975K562UCHL5
chr206236735462367427+3'-UTR,intron-Distal4.064763.62765K562SRSF1
chr206236859462368614+intron-Distal5.194278.57568HepG2XRN2
chr206236701862367119+intron-Distal,intron-Proximal3.060339.31324HepG2RBFOX2
chr206236734562367424+3'-UTR,intron-Distal3.343797.02296HepG2SRSF1
chr206236686662366918+CDS,intron-Proximal4.849068.32768HepG2GRWD1
chr206236688162366946+CDS,intron-Proximal3.532745.33249HepG2AQR
chr206236687562366918+CDS,intron-Proximal3.149919.20212HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LIME1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LIME1 is not available on ENCORE database.

  • 92 RBPs can affect the levels of LIME1.  








The Knockdown/knockout RNA-Seq assay for LIME1 is not available on ENCORE database.





92 RBPs can affect the gene expression of LIME1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LIME1ENSG00000203896.516.8515092.11660-2.450604.224202.92640HepG2AATF
LIME1ENSG00000203896.5916.37850305.624101.5841013.2490011.44910HepG2ABCF1
LIME1ENSG00000203896.5170.95650429.53490-1.3291020.1646018.85830HepG2ACO1
LIME1ENSG00000203896.541.29750286.94430-2.796603.748503.14250HepG2AKAP1
LIME1ENSG00000203896.5271.41170409.54990-0.593604.569503.72530HepG2AUH
LIME1ENSG00000203896.544.64280124.46410-1.479205.268404.24640HepG2CALR
LIME1ENSG00000203896.5235.35460119.173300.981702.326401.44000HepG2CCAR1
LIME1ENSG00000203896.583.5254030.434601.456405.086003.70330HepG2YBX3
LIME1ENSG00000203896.5660.23520397.239800.732904.684303.63640HepG2DDX19B
LIME1ENSG00000203896.51319.88310410.938101.6833061.0262058.96270HepG2DKC1
LIME1ENSG00000203896.583.3727029.891101.479802.351801.69720HepG2DNAJC21
LIME1ENSG00000203896.5100.1126029.617601.757008.817307.73130HepG2DNAJC2
LIME1ENSG00000203896.5362.05330111.499801.699105.103903.88640HepG2EEF2
LIME1ENSG00000203896.5152.3797045.533401.742609.934408.43650HepG2EIF4G2
LIME1ENSG00000203896.5176.17630308.57680-0.808602.125001.44610HepG2FIP1L1
LIME1ENSG00000203896.5190.92420390.02820-1.030609.528508.11510HepG2FUBP3
LIME1ENSG00000203896.5311.3947071.279802.127103.884903.13760HepG2GPKOW
LIME1ENSG00000203896.5293.56210410.05860-0.482203.657902.54660HepG2HDGF
LIME1ENSG00000203896.569.6507028.175201.305602.648101.31560HepG2HNRNPA0
LIME1ENSG00000203896.5257.9848091.945601.488306.053505.04740HepG2HNRNPF
LIME1ENSG00000203896.5115.2499043.903401.392306.389805.40590HepG2HNRNPL
LIME1ENSG00000203896.5195.0042068.026101.519203.516102.81630HepG2HNRNPLL
LIME1ENSG00000203896.5155.2154033.341902.2188016.7960015.40030HepG2HNRNPU
LIME1ENSG00000203896.5294.8774090.540701.703404.524403.61860HepG2IGF2BP1
LIME1ENSG00000203896.562.9872034.058200.887002.169801.51140HepG2ILF2
LIME1ENSG00000203896.596.5118031.736401.604505.003603.33600HepG2KHDRBS1
LIME1ENSG00000203896.5371.58170126.090601.559109.044007.53730HepG2LARP4
LIME1ENSG00000203896.5106.0328043.012501.301604.095102.62130HepG2LIN28B
LIME1ENSG00000203896.5995.63700253.318801.9746029.4469027.48670HepG2MAGOH
LIME1ENSG00000203896.5621.41110254.678401.286803.694402.97600HepG2MATR3
LIME1ENSG00000203896.5173.05100249.60870-0.528502.575801.79390HepG2MSI2
LIME1ENSG00000203896.5105.90270209.62920-0.985103.111301.82050HepG2NAA15
LIME1ENSG00000203896.5166.6492037.073902.1682010.035407.45710HepG2NIP7
LIME1ENSG00000203896.5110.8842047.785601.214304.875403.86750HepG2NOL12
LIME1ENSG00000203896.5233.0382054.371902.0995011.913108.90110HepG2NOLC1
LIME1ENSG00000203896.5357.3394079.059402.176204.342102.95400HepG2NONO
LIME1ENSG00000203896.5140.3027060.337501.217303.254202.44390HepG2NSUN2
LIME1ENSG00000203896.5376.58220279.837800.428302.745602.14050HepG2PCBP1
LIME1ENSG00000203896.5153.0090074.828401.031903.069201.77180HepG2PKM
LIME1ENSG00000203896.5194.6295029.738902.710206.004504.95170HepG2PPIL4
LIME1ENSG00000203896.5201.30460284.74600-0.500303.117802.54420HepG2PTBP1
LIME1ENSG00000203896.5431.8402045.611203.2429044.2209042.21270HepG2PUF60
LIME1ENSG00000203896.5197.7115048.413202.0298018.7914017.52530HepG2PUM1
LIME1ENSG00000203896.5164.07090308.38580-0.910406.815805.90000HepG2QKI
LIME1ENSG00000203896.5129.33640393.01330-1.6035021.2245020.06250HepG2RBM22
LIME1ENSG00000203896.5231.5847049.458002.2272016.2577013.89050HepG2RBM27
LIME1ENSG00000203896.5285.0859040.162602.827404.633103.25540HepG2RCC2
LIME1ENSG00000203896.5588.55520316.894500.8931011.1877010.23800HepG2NELFE
LIME1ENSG00000203896.5606.85220295.145001.039806.033505.17170HepG2RECQL
LIME1ENSG00000203896.5224.1816045.602902.2974017.0949015.22530HepG2RPS2
LIME1ENSG00000203896.5216.1198033.435102.6923013.5679011.85510HepG2RPS3A
LIME1ENSG00000203896.5140.6673046.561901.595006.729805.06110HepG2RPS5
LIME1ENSG00000203896.5135.9758029.694302.195003.438502.73440HepG2SAFB2
LIME1ENSG00000203896.5104.2235031.482201.727007.107005.05790HepG2SART3
LIME1ENSG00000203896.5565.56370354.687100.673002.524501.88080HepG2SF3A3
LIME1ENSG00000203896.5365.9403043.723603.0650031.4973029.64970HepG2SLBP
LIME1ENSG00000203896.570.0278034.631801.015702.727702.08660HepG2SMN1
LIME1ENSG00000203896.5118.02230443.89520-1.9112032.1019030.88550HepG2SRFBP1
LIME1ENSG00000203896.574.55700309.43670-2.0532024.2011023.10440HepG2SRSF1
LIME1ENSG00000203896.5190.7850045.028302.0829017.9285016.52860HepG2SRSF5
LIME1ENSG00000203896.5179.7288090.331600.992403.403102.64220HepG2SRSF7
LIME1ENSG00000203896.570.11470251.74360-1.8442020.2823019.04030HepG2SRSF9
LIME1ENSG00000203896.51292.32370385.408301.7454012.0270011.10530HepG2SSB
LIME1ENSG00000203896.595.1745029.119001.708507.261505.42020HepG2STIP1
LIME1ENSG00000203896.5173.0848051.214901.7567012.7079011.53940HepG2SUCLG1
LIME1ENSG00000203896.540.65380278.13490-2.7743034.3929032.69770HepG2TAF15
LIME1ENSG00000203896.591.38030255.56690-1.4837013.7227011.89720HepG2TIA1
LIME1ENSG00000203896.5150.1533032.409802.211805.703005.03510HepG2TIAL1
LIME1ENSG00000203896.5123.9487032.686701.922909.276308.33630HepG2TRIM56
LIME1ENSG00000203896.5344.3906044.551902.950403.546302.54390HepG2TUFM
LIME1ENSG00000203896.5157.36010263.89150-0.745903.208302.53540HepG2U2AF1
LIME1ENSG00000203896.5149.5115047.152001.664805.495604.29060HepG2UBE2L3
LIME1ENSG00000203896.5394.40660314.553000.326301.978101.37150HepG2UPF1
LIME1ENSG00000203896.5386.94320303.688900.349401.926801.40850HepG2UTP3
LIME1ENSG00000203896.5120.6757029.953402.0102010.346308.27340HepG2XPO5
LIME1ENSG00000203896.5608.7957084.236602.8533012.4120010.90160HepG2XRN2
LIME1ENSG00000203896.5212.33340345.94840-0.704206.270805.53390HepG2ZNF622
LIME1ENSG00000203896.5126.5438065.972800.939603.667102.38690K562CPEB4
LIME1ENSG00000203896.578.1200035.520101.137003.144402.00890K562CSTF2
LIME1ENSG00000203896.5131.2144068.243900.943104.193703.41350K562DDX47
LIME1ENSG00000203896.5161.2907095.551900.755203.458002.66770K562EIF2S2
LIME1ENSG00000203896.587.7960047.435300.888102.605901.78320K562FIP1L1
LIME1ENSG00000203896.58.3585032.62850-1.964803.053001.85510K562FKBP4
LIME1ENSG00000203896.5103.6209060.403500.778502.401601.83050K562FXR1
LIME1ENSG00000203896.579.2894037.599601.076302.800902.20070K562HNRNPC
LIME1ENSG00000203896.559.3199021.727601.448903.870902.86900K562MAGOH
LIME1ENSG00000203896.580.5118037.013901.121002.988101.48770K562NUSAP1
LIME1ENSG00000203896.591.0528053.860200.757402.166801.44510K562PPIG
LIME1ENSG00000203896.573.0493033.710801.115602.840301.92110K562PSIP1
LIME1ENSG00000203896.552.6386021.112601.317903.227102.51630K562PTBP1
LIME1ENSG00000203896.5249.19050179.188900.475702.077501.37050K562PUF60
LIME1ENSG00000203896.567.60110114.63940-0.762002.158301.66660K562PUS1
LIME1ENSG00000203896.560.6224020.223701.583704.555603.44620K562RBM22
LIME1ENSG00000203896.565.9224030.751101.100002.561101.61090K562RCC2
LIME1ENSG00000203896.550.0197018.579301.428702.277201.37950K562RPS3
LIME1ENSG00000203896.563.9729029.151801.133802.645401.64930K562SRFBP1
LIME1ENSG00000203896.560.8980020.701701.556503.991203.14810K562SRSF1
LIME1ENSG00000203896.553.7024017.917401.583503.120701.98620K562SRSF4
LIME1ENSG00000203896.592.7576020.942202.146907.072405.88870K562TARDBP
LIME1ENSG00000203896.567.6485020.203601.743305.354304.16110K562TIA1
LIME1ENSG00000203896.546.9845019.847501.243102.327901.34370K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LIME1 is not available on ENCORE database.





9 RBPs can affect the splicing of LIME1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RILIME1ENSG00000203896.5chr20+623693606236985262369360623694136236953562369852-0.439000.003200.09307excludedHepG2AKAP1
RILIME1ENSG00000203896.5chr20+623693606236985262369360623694136236953562369852-0.479000.005200.09001excludedHepG2UCHL5
RILIME1ENSG00000203896.5chr20+6236917362369413623691736236925562369360623694130.702000.002940.06014includedHepG2FTO
RILIME1ENSG00000203896.5chr20+623693606236985262369360623694136236953562369852-0.223000.009900.09358excludedHepG2PCBP1
RILIME1ENSG00000203896.5chr20+6236936062369852623693606236941362369535623698520.235000.004840.07908includedHepG2KHSRP
RILIME1ENSG00000203896.5chr20+623693606236985262369360623694136236953562369852-0.359000.000010.00037excludedHepG2NCBP2
RILIME1ENSG00000203896.5chr20+623693606236985262369360623694136236953562369852-0.277000.002100.01731excludedHepG2SF3B4
RILIME1ENSG00000203896.5chr20+623693606236985262369360623694136236953562369852-0.466000.000060.00294excludedHepG2PTBP1
RILIME1ENSG00000203896.5chr20+6236936062369852623693606236941362369535623698520.252000.002340.01452includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LIME1 is not avaliable on ENCORE database.