TMEM256-PLSCR3

General Information

Gene Name       : TMEM256-PLSCR3
Gene ID             : ENSG00000262481.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM256-PLSCR3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM256-PLSCR3ENSG00000262481.50.000.060.03ENCSR000AEF
HepG2TMEM256-PLSCR3ENSG00000262481.50.000.000.00ENCSR985KAT
K562TMEM256-PLSCR3ENSG00000262481.50.150.000.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM256-PLSCR3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM256-PLSCR3 RNA is bound by 16 proteins.  







eCLIP assay for TMEM256-PLSCR3 is not avaliable on ENCORE database.





16 proteins are bound to TMEM256-PLSCR3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1772977807297798-3'-UTR,5'-UTR,intron-Distal5.235956.74224HepG2AQR
chr1772974497297586-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.891676.02664K562DDX3X
chr1772977547297790-3'-UTR,5'-UTR,intron-Distal6.3067913.72936K562AQR
chr1772976977297812-3'-UTR,5'-UTR,intron-Distal3.435977.89388HepG2PRPF8
chr1772939527294007-3'-UTR,CDS,intron-Distal,intron-Proximal3.849943.16051HepG2PPIG
chr1772977907297795-3'-UTR,5'-UTR,intron-Distal6.1679512.64691K562AQR
chr1772977527297780-3'-UTR,5'-UTR,intron-Distal5.398978.88638HepG2AQR
chr1773073397307413-5'-UTR,CDS,intron-Distal,intron-Proximal5.4540319.01650HepG2LARP4
chr1773066287306660-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.8002511.91640HepG2LARP4
chr1773069907306998-5'-UTR,CDS,intron-Distal3.9154011.91640HepG2LARP4
chr1773070027307082-5'-UTR,CDS,intron-Distal,intron-Proximal4.353013.93614HepG2AQR
chr1773073147307404-5'-UTR,CDS,intron-Distal,intron-Proximal3.104626.68418HepG2DDX55
chr1773069757307008-5'-UTR,CDS,intron-Distal,intron-Proximal3.995378.96385K562DDX3X
chr1773072977307373-5'-UTR,CDS,intron-Distal,intron-Proximal3.110913.99124HepG2PPIG
chr1773073337307406-5'-UTR,CDS,intron-Distal,intron-Proximal5.558718.90399HepG2DDX3X
chr1773073177307339-5'-UTR,CDS,intron-Distal4.7627819.87491HepG2LARP4
chr1773069757307009-5'-UTR,CDS,intron-Distal,intron-Proximal3.676975.21096K562DDX55
chr1773066727306719-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.145826.98523HepG2U2AF2
chr1773073347307400-5'-UTR,CDS,intron-Distal,intron-Proximal5.855666.59792K562PABPC4
chr1773069767306986-5'-UTR,CDS,intron-Distal,intron-Proximal3.483175.81815HepG2LARP4
chr1773066807306707-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3310616.55545HepG2LARP4
chr1773066607306680-3'-UTR,5'-UTR,CDS,intron-Distal4.2364215.97887HepG2LARP4
chr1773066387306711-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.059736.09386K562DDX55
chr1773069707307021-5'-UTR,CDS,intron-Distal,intron-Proximal5.598117.53537HepG2U2AF2
chr1773073187307384-5'-UTR,CDS,intron-Distal,intron-Proximal3.486566.51063K562DDX55
chr1773069367306983-5'-UTR,CDS,intron-Distal,intron-Proximal5.048067.36776HepG2PRPF8
chr1773073167307410-5'-UTR,CDS,intron-Distal,intron-Proximal5.3941218.94710K562DDX3X
chr1773066457306698-3'-UTR,5'-UTR,CDS,intron-Distal3.672168.21916K562YBX3
chr1773073657307415-5'-UTR,CDS,intron-Distal,intron-Proximal3.406995.66201HepG2NCBP2
chr1773070017307008-5'-UTR,CDS,intron-Distal4.2921411.35341HepG2LARP4
chr1773064017306525-3'-UTR,CDS,intron-Distal4.137034.27920HepG2YBX3
chr1773067287306803-intron-Distal,intron-Proximal3.220267.22233HepG2PRPF4
chr1773067437306809-intron-Distal,intron-Proximal3.928725.09328HepG2SF3B4
chr1773064807306522-3'-UTR,CDS,intron-Distal3.413399.27085K562YBX3
chr1773063767306417-3'-UTR,CDS,intron-Distal3.934018.14591K562YBX3
chr1773067117306792-intron-Distal,intron-Proximal5.5655713.14409HepG2SF3A3
chr1773068477306935-intron-Distal,intron-Proximal3.9591915.07765HepG2PRPF4
chr1773063707306443-3'-UTR,CDS,intron-Distal3.3743118.31403HepG2LARP4
chr1773068527306910-intron-Distal,intron-Proximal4.132765.09328HepG2SF3B4
chr1773063307306370-3'-UTR,intron-Distal4.1220110.48878HepG2LARP4
chr1773064307306441-3'-UTR,CDS,intron-Distal5.0944419.85955K562YBX3
chr1773064177306430-3'-UTR,CDS,intron-Distal4.882608.30668K562YBX3
chr1773063747306448-3'-UTR,CDS,intron-Distal3.420114.75351K562LIN28B
chr1773064417306480-3'-UTR,CDS,intron-Distal4.7127630.46373K562YBX3
chr1772968317296886-intron-Distal,intron-Proximal5.037815.02942K562EFTUD2
chr1773068507306896-intron-Distal,intron-Proximal3.755415.26540HepG2GTF2F1
chr1773070247307096-intron-Distal,intron-Proximal4.364788.09250HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM256-PLSCR3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM256-PLSCR3 is not available on ENCORE database.

  • 66 RBPs can affect the levels of TMEM256-PLSCR3.  








The Knockdown/knockout RNA-Seq assay for TMEM256-PLSCR3 is not available on ENCORE database.





66 RBPs can affect the gene expression of TMEM256-PLSCR3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM256-PLSCR3ENSG00000187838.12311.92350222.305700.488501.855501.41040HepG2AKAP1
TMEM256-PLSCR3ENSG00000187838.12329.87940212.286100.635803.168302.05610HepG2AKAP8
TMEM256-PLSCR3ENSG00000187838.12181.66640274.95040-0.597902.894402.28330HepG2BOP1
TMEM256-PLSCR3ENSG00000187838.12493.66470289.195200.771404.908103.59540HepG2CCAR1
TMEM256-PLSCR3ENSG00000187838.12369.17500230.718800.678105.040904.22070HepG2CELF1
TMEM256-PLSCR3ENSG00000187838.12235.97560175.208900.429502.218301.46630HepG2DDX19B
TMEM256-PLSCR3ENSG00000187838.12255.62490132.848300.944106.020805.06430HepG2DDX21
TMEM256-PLSCR3ENSG00000187838.12459.74400171.241101.4247011.375209.93680HepG2DDX55
TMEM256-PLSCR3ENSG00000187838.12177.70360286.64870-0.689802.453301.53330HepG2DDX59
TMEM256-PLSCR3ENSG00000187838.12283.68790182.959100.632702.812102.18960HepG2DDX6
TMEM256-PLSCR3ENSG00000187838.12245.57750160.987400.609103.399302.62520HepG2DNAJC21
TMEM256-PLSCR3ENSG00000187838.12215.25800159.557000.431902.063001.48410HepG2DNAJC2
TMEM256-PLSCR3ENSG00000187838.12159.79230234.47170-0.553202.613301.82030HepG2EIF4G2
TMEM256-PLSCR3ENSG00000187838.12141.46070252.84150-0.837802.341201.41320HepG2FTO
TMEM256-PLSCR3ENSG00000187838.12291.52180196.106300.571902.651101.97370HepG2FXR1
TMEM256-PLSCR3ENSG00000187838.12305.94710162.529600.912506.070105.16500HepG2HNRNPA1
TMEM256-PLSCR3ENSG00000187838.12270.16100180.781200.579502.629701.95200HepG2HNRNPC
TMEM256-PLSCR3ENSG00000187838.12174.34820273.09980-0.647503.015402.36240HepG2HNRNPLL
TMEM256-PLSCR3ENSG00000187838.12289.12120183.441900.656304.764403.82460HepG2ILF2
TMEM256-PLSCR3ENSG00000187838.12507.11650305.399600.731504.597503.51880HepG2LARP4
TMEM256-PLSCR3ENSG00000187838.12310.86720160.902700.950003.884202.64100HepG2METAP2
TMEM256-PLSCR3ENSG00000187838.12365.04820201.900200.854305.552204.66940HepG2NCBP2
TMEM256-PLSCR3ENSG00000187838.12139.16460242.13570-0.799003.735902.86840HepG2NSUN2
TMEM256-PLSCR3ENSG00000187838.12268.01530177.763300.592303.513902.57030HepG2PARN
TMEM256-PLSCR3ENSG00000187838.12140.57110216.91580-0.625803.330602.48900HepG2PRPF4
TMEM256-PLSCR3ENSG00000187838.12298.11090165.427600.849506.452905.68560HepG2PTBP1
TMEM256-PLSCR3ENSG00000187838.12374.95750264.399200.503903.126902.21960HepG2RBM15
TMEM256-PLSCR3ENSG00000187838.12459.66540224.345301.0348012.0773011.15160HepG2RBM22
TMEM256-PLSCR3ENSG00000187838.12239.11730162.598600.556302.567001.91400HepG2RBM25
TMEM256-PLSCR3ENSG00000187838.12282.80000184.103100.619203.554202.95710HepG2NELFE
TMEM256-PLSCR3ENSG00000187838.12178.03090325.26450-0.869505.674904.74720HepG2RPLP0
TMEM256-PLSCR3ENSG00000187838.12313.05410149.651801.064708.315307.31620HepG2RPS19
TMEM256-PLSCR3ENSG00000187838.12248.0194092.668001.420204.102602.37260HepG2SF1
TMEM256-PLSCR3ENSG00000187838.12156.40600270.33050-0.789404.362303.49410HepG2SF3B1
TMEM256-PLSCR3ENSG00000187838.12258.5489090.092401.520904.344602.45810HepG2SFPQ
TMEM256-PLSCR3ENSG00000187838.12383.53980186.509701.0400012.3397011.13300HepG2SMN1
TMEM256-PLSCR3ENSG00000187838.12182.7934082.995301.139002.881701.53860HepG2SNRNP200
TMEM256-PLSCR3ENSG00000187838.12249.63470179.769800.473602.172101.73910HepG2SRSF1
TMEM256-PLSCR3ENSG00000187838.12164.61410231.87120-0.494202.610801.99850HepG2SRSF5
TMEM256-PLSCR3ENSG00000187838.12192.32400296.69000-0.625403.857703.05630HepG2SRSF7
TMEM256-PLSCR3ENSG00000187838.12202.43940146.253700.468902.109401.61410HepG2SRSF9
TMEM256-PLSCR3ENSG00000187838.12233.49410174.512600.420001.805601.38380HepG2TIAL1
TMEM256-PLSCR3ENSG00000187838.12256.55890188.434500.445102.207601.57260HepG2UPF1
TMEM256-PLSCR3ENSG00000187838.12274.95200146.335000.909802.923401.83370HepG2XRCC6
TMEM256-PLSCR3ENSG00000187838.12398.00670267.044700.575604.257603.58000K562AGGF1
TMEM256-PLSCR3ENSG00000187838.12112.31630253.11100-1.172206.855705.99900K562AQR
TMEM256-PLSCR3ENSG00000187838.12283.22020381.19600-0.428602.572701.63270K562CELF1
TMEM256-PLSCR3ENSG00000187838.12245.01760138.109600.827005.158803.67360K562DDX3X
TMEM256-PLSCR3ENSG00000187838.12193.69150129.929300.575902.747201.59940K562EIF4B
TMEM256-PLSCR3ENSG00000187838.12222.24870309.90560-0.479703.046502.06240K562EIF4G2
TMEM256-PLSCR3ENSG00000187838.1286.33650151.90550-0.815103.087201.88420K562FKBP4
TMEM256-PLSCR3ENSG00000187838.12101.03670150.04810-0.570502.062101.52510K562FXR1
TMEM256-PLSCR3ENSG00000187838.1211.1600063.59850-2.510707.597506.30490K562G3BP2
TMEM256-PLSCR3ENSG00000187838.12261.42430186.139100.489902.180401.47150K562HSPD1
TMEM256-PLSCR3ENSG00000187838.12244.01630112.922301.111504.654603.18300K562IGF2BP2
TMEM256-PLSCR3ENSG00000187838.12131.11310255.59660-0.963105.592004.40420K562PCBP3
TMEM256-PLSCR3ENSG00000187838.12110.53870196.04930-0.826704.323903.31830K562POLR2G
TMEM256-PLSCR3ENSG00000187838.12245.85060155.879400.657303.447102.51620K562PPIG
TMEM256-PLSCR3ENSG00000187838.1267.39280113.12330-0.747202.144101.48070K562PRPF8
TMEM256-PLSCR3ENSG00000187838.12280.53520156.835000.838804.692003.47040K562PSIP1
TMEM256-PLSCR3ENSG00000187838.12233.64710338.11150-0.533202.940602.09880K562PUF60
TMEM256-PLSCR3ENSG00000187838.12259.16650359.76850-0.473203.118601.98300K562PUM1
TMEM256-PLSCR3ENSG00000187838.12382.93100268.504500.512002.475601.90910K562RBM15
TMEM256-PLSCR3ENSG00000187838.12223.37660143.109100.642302.975401.94570K562RCC2
TMEM256-PLSCR3ENSG00000187838.12221.67410135.661800.708303.286102.14310K562SRFBP1
TMEM256-PLSCR3ENSG00000187838.12177.53870106.700100.734503.344302.17130K562SRSF5
TMEM256-PLSCR3ENSG00000187838.12208.03790114.278700.864204.617403.69770K562TARDBP
TMEM256-PLSCR3ENSG00000187838.12192.03920110.242200.800603.332502.42290K562TIA1
TMEM256-PLSCR3ENSG00000187838.12264.12330160.274900.720603.806602.66210K562TRIM56
TMEM256-PLSCR3ENSG00000187838.1234.2723063.68220-0.893802.061201.36830K562U2AF2
TMEM256-PLSCR3ENSG00000187838.12161.81570255.75330-0.660402.852201.99280K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM256-PLSCR3 is not available on ENCORE database.





12 RBPs can affect the splicing of TMEM256-PLSCR3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM256-PLSCR3ENSG00000187838.12chr17-729646272966837296109729627172967857296828-0.499000.000230.01235excludedK562FXR1
SETMEM256-PLSCR3ENSG00000187838.12chr17-729691972971557296785729682872974227297590-0.508000.000030.00230excludedK562FXR1
SETMEM256-PLSCR3ENSG00000187838.12chr17-729646272966837296109729627172967857296828-0.424000.000370.05809excludedK562DROSHA
SETMEM256-PLSCR3ENSG00000187838.12chr17-729646272966837296109729627172967857296828-0.430000.002470.08227excludedHepG2MATR3
SETMEM256-PLSCR3ENSG00000187838.12chr17-729691972971557296785729682872974227297590-0.359000.001820.06536excludedHepG2MATR3
SETMEM256-PLSCR3ENSG00000187838.12chr17-729646272966837296109729627172967857296828-0.630000.000050.00200excludedHepG2SRSF1
SETMEM256-PLSCR3ENSG00000187838.12chr17-7296919729715572967857296828729742272975900.312000.000580.08402includedK562SRSF7
SETMEM256-PLSCR3ENSG00000187838.12chr17-729646272966837296109729627172967857296828-0.535000.000940.05829excludedHepG2SRSF9
A5SSTMEM256-PLSCR3ENSG00000187838.12chr17-729646272968287296785729682872961097296271-0.685000.000470.03165shorterHepG2SRSF1
A5SSTMEM256-PLSCR3ENSG00000187838.12chr17-729691972975867297422729758672967857296828-0.462000.000000.00209shorterK562PPIL4
A5SSTMEM256-PLSCR3ENSG00000187838.12chr17-729691972975867297422729758672967857296828-0.477000.000110.01525shorterK562FXR1
A5SSTMEM256-PLSCR3ENSG00000187838.12chr17-729691972975867297422729758672967857296828-0.407000.000120.03130shorterK562DROSHA
RITMEM256-PLSCR3ENSG00000187838.12chr17-7296919729758672969197297155729742272975860.101000.000000.00035includedHepG2FTO
RITMEM256-PLSCR3ENSG00000187838.12chr17-7296919729758672969197297155729742272975860.098000.000980.01137includedHepG2U2AF1
RITMEM256-PLSCR3ENSG00000187838.12chr17-7296462729682872964627296683729678572968280.323000.002810.03195includedHepG2NCBP2
RITMEM256-PLSCR3ENSG00000187838.12chr17-7296462729682872964627296683729678572968280.364000.008120.05229includedHepG2SF3B4
RITMEM256-PLSCR3ENSG00000187838.12chr17-7296919729758672969197297155729742272975860.155000.004350.04022includedHepG2RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM256-PLSCR3 is not avaliable on ENCORE database.