C20orf27

General Information

Gene Name       : C20orf27
Gene ID             : ENSG00000101220.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C20orf27)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C20orf27ENSG00000101220.171.4411.916.67ENCSR000AEF
HepG2C20orf27ENSG00000101220.1786.1721.0253.59ENCSR985KAT
K562C20orf27ENSG00000101220.1746.1915.7530.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C20orf27 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C20orf27 RNA is bound by 16 proteins.  







eCLIP assay for C20orf27 is not avaliable on ENCORE database.





16 proteins are bound to C20orf27 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2037344773734559-3'-UTR,intron-Distal3.073393.06957K562DDX55
chr2037344963734564-3'-UTR,intron-Distal4.6993711.06468HepG2LARP4
chr2037407273740830-3'-UTR,CDS,intron-Distal,intron-Proximal4.935654.23238K562FTO
chr2037345643734662-3'-UTR,intron-Distal3.520468.24214HepG2LARP4
chr2037344943734570-3'-UTR,intron-Distal4.212739.22467HepG2UPF1
chr2037407423740796-3'-UTR,CDS,intron-Distal4.368344.44583HepG2UPF1
chr2037343913734460-3'-UTR,intron-Distal4.973185.94928K562UPF1
chr2037344473734487-3'-UTR,intron-Distal4.405026.06785HepG2GRSF1
chr2037343953734496-3'-UTR,intron-Distal4.665238.33510HepG2DDX55
chr2037344313734474-3'-UTR,intron-Distal3.706973.81620HepG2LARP4
chr2037407333740801-3'-UTR,CDS,intron-Distal5.1674544.34026HepG2DDX3X
chr2037408013740833-3'-UTR,intron-Distal4.3658921.94382HepG2DDX3X
chr2037344773734561-3'-UTR,intron-Distal3.069433.79754HepG2AKAP1
chr2037407303740834-3'-UTR,CDS,intron-Distal,intron-Proximal4.6388018.35089K562DDX3X
chr2037343533734420-3'-UTR,intron-Distal3.385684.31234HepG2GRSF1
chr2037345703734648-3'-UTR,intron-Distal5.291186.45671HepG2UPF1
chr2037344223734447-3'-UTR,intron-Distal3.750315.85977HepG2GRSF1
chr2037343353734494-3'-UTR,intron-Distal4.5600117.95779HepG2UPF1
chr2037343473734415-3'-UTR,intron-Distal3.646133.44343HepG2AKAP1
chr2037341883734391-3'-UTR,intron-Distal3.9484613.03891K562UPF1
chr2037483083748394-5'-UTR,intron-Distal,intron-Proximal4.3990852.91747HepG2DDX3X
chr2037483083748376-5'-UTR,intron-Distal,intron-Proximal6.7097912.40937K562DDX3X
chr2037482263748281-5'-UTR,intron-Distal3.978454.37625HepG2RBM22
chr2037390933739214-CDS,intron-Distal,intron-Proximal4.535519.39957HepG2PRPF8
chr2037360753736135-CDS,intron-Distal,intron-Proximal3.404304.97939HepG2PRPF8
chr2037351473735275-CDS,intron-Distal,intron-Proximal5.3530219.08347K562RBFOX2
chr2037350593735107-CDS,intron-Distal3.913103.43253K562YBX3
chr2037393063739351-CDS,intron-Distal,intron-Proximal3.672208.57308HepG2BUD13
chr2037351583735219-CDS,intron-Distal,intron-Proximal4.5388026.77822HepG2RBFOX2
chr2037393173739387-CDS,intron-Distal,intron-Proximal4.695694.90235K562SF3B4
chr2037392903739378-CDS,intron-Distal,intron-Proximal4.050986.78984HepG2AQR
chr2037391033739150-intron-Distal,intron-Proximal4.609973.69482HepG2RBM22
chr2037353943735485-intron-Distal4.348423.89786K562RBFOX2
chr2037349783735041-intron-Distal,intron-Proximal3.438243.96999HepG2CSTF2T
chr2037352193735257-intron-Distal,intron-Proximal6.4812573.93839HepG2RBFOX2
chr2037360073736067-intron-Distal,intron-Proximal4.108097.07105HepG2RBFOX2
chr2037405203740610-intron-Distal,intron-Proximal5.116076.83960K562AQR
chr2037359893736096-intron-Distal,intron-Proximal4.314118.80047HepG2EFTUD2
chr2037352573735325-intron-Distal,intron-Proximal7.5943355.34152HepG2RBFOX2
chr2037349743735037-intron-Distal,intron-Proximal3.981943.06537K562RBFOX2
chr2037351693735234-intron-Distal,intron-Proximal4.647546.12902HepG2SF3B4
chr2037393513739379-intron-Distal,intron-Proximal3.420714.35521HepG2BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C20orf27 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C20orf27 is not available on ENCORE database.

  • 101 RBPs can affect the levels of C20orf27.  








The Knockdown/knockout RNA-Seq assay for C20orf27 is not available on ENCORE database.





101 RBPs can affect the gene expression of C20orf27 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C20orf27ENSG00000101220.13203.89440375.61860-0.881403.065601.94330HepG2AATF
C20orf27ENSG00000101220.131110.569201331.15040-0.261401.949501.35510HepG2AUH
C20orf27ENSG00000101220.13289.78070391.87800-0.435402.257501.71160HepG2BOP1
C20orf27ENSG00000101220.13192.82610343.20140-0.831804.980603.98230HepG2CALR
C20orf27ENSG00000101220.13171.73190359.75980-1.066908.538407.38760HepG2CPSF6
C20orf27ENSG00000101220.13374.73400279.006800.425502.589001.60640HepG2YBX3
C20orf27ENSG00000101220.13200.17590384.85170-0.943004.028002.27810HepG2CSTF2T
C20orf27ENSG00000101220.13884.44030723.979400.288702.975002.11210HepG2DDX19B
C20orf27ENSG00000101220.13301.36200413.80600-0.457501.883501.31190HepG2DDX21
C20orf27ENSG00000101220.13241.36320405.45100-0.748303.062002.10060HepG2DDX24
C20orf27ENSG00000101220.13181.48090408.53550-1.170605.947404.53580HepG2DDX59
C20orf27ENSG00000101220.13501.17480271.547500.8840012.5991011.31530HepG2DNAJC2
C20orf27ENSG00000101220.13181.22410381.48510-1.073903.398602.16140HepG2AGO1
C20orf27ENSG00000101220.131266.137201528.45300-0.271602.542901.96260HepG2ETF1
C20orf27ENSG00000101220.13269.68480394.61020-0.549202.438901.36250HepG2FASTKD2
C20orf27ENSG00000101220.13198.64060360.38810-0.859402.685901.68430HepG2FTO
C20orf27ENSG00000101220.13301.32830611.30500-1.0206012.6572011.03430HepG2FUBP3
C20orf27ENSG00000101220.13392.11440237.781900.721504.044202.36900HepG2HNRNPA0
C20orf27ENSG00000101220.13675.04470544.580300.309702.054601.46290HepG2HNRNPL
C20orf27ENSG00000101220.13208.85390389.17280-0.897906.561105.63680HepG2HNRNPLL
C20orf27ENSG00000101220.13394.86940305.615200.369602.225501.67620HepG2HNRNPU
C20orf27ENSG00000101220.13411.20850267.922000.618003.412102.06340HepG2KHDRBS1
C20orf27ENSG00000101220.131157.84710583.516200.9885010.444108.83190HepG2LARP4
C20orf27ENSG00000101220.131338.11800770.958100.795402.591801.97980HepG2MATR3
C20orf27ENSG00000101220.13185.28400396.93920-1.099204.108302.91730HepG2MTPAP
C20orf27ENSG00000101220.13288.26370547.71380-0.926003.261201.93970HepG2NAA15
C20orf27ENSG00000101220.13364.11220193.571800.911404.990403.08470HepG2NOLC1
C20orf27ENSG00000101220.13156.24510345.08730-1.143208.811307.53250HepG2NSUN2
C20orf27ENSG00000101220.13467.07240272.583800.776808.262507.03830HepG2PPIL4
C20orf27ENSG00000101220.13503.23040633.62180-0.332402.550601.80540HepG2PRPF4
C20orf27ENSG00000101220.13624.43520771.85770-0.305802.308501.80020HepG2PTBP1
C20orf27ENSG00000101220.13790.91310565.936600.482804.238503.51870HepG2PUF60
C20orf27ENSG00000101220.13729.49580600.790500.279902.667202.08240HepG2PUM1
C20orf27ENSG00000101220.13411.88280835.84920-1.0210016.5594015.21520HepG2QKI
C20orf27ENSG00000101220.13255.76130644.37390-1.3331023.0554021.01050HepG2RBM15
C20orf27ENSG00000101220.131070.457801277.48010-0.255101.921501.46880HepG2RBM22
C20orf27ENSG00000101220.13409.57150758.62150-0.889308.513107.37980HepG2RBM25
C20orf27ENSG00000101220.13686.04110858.96770-0.324302.627002.09750HepG2NELFE
C20orf27ENSG00000101220.13394.45180282.328300.482402.110801.41160HepG2RPS3A
C20orf27ENSG00000101220.13172.86710426.39320-1.302502.152301.45090HepG2RRP9
C20orf27ENSG00000101220.13433.16790272.162000.670406.574205.64460HepG2SAFB2
C20orf27ENSG00000101220.13401.26670265.856700.593803.071301.69420HepG2SART3
C20orf27ENSG00000101220.13270.44710385.19530-0.510202.711902.01260HepG2SF3B1
C20orf27ENSG00000101220.13427.54850317.383900.429803.297002.60520HepG2SMN1
C20orf27ENSG00000101220.13195.66380428.60050-1.131307.452706.16250HepG2SNRNP70
C20orf27ENSG00000101220.13960.958401442.82460-0.586409.502808.72630HepG2SRFBP1
C20orf27ENSG00000101220.13598.57240838.73900-0.486704.185203.63300HepG2SRSF1
C20orf27ENSG00000101220.13251.69830414.49670-0.719703.963602.74290HepG2SRSF3
C20orf27ENSG00000101220.13749.85900558.808500.424204.508003.74300HepG2SRSF5
C20orf27ENSG00000101220.13318.52520682.38600-1.0992020.6572019.40510HepG2SRSF9
C20orf27ENSG00000101220.13940.624501252.63990-0.413304.826504.18560HepG2SSB
C20orf27ENSG00000101220.13877.97880635.494800.466206.338905.46730HepG2SUCLG1
C20orf27ENSG00000101220.13418.45030753.97870-0.849507.927607.05750HepG2TAF15
C20orf27ENSG00000101220.13213.24420379.36370-0.831105.998504.98780HepG2TARDBP
C20orf27ENSG00000101220.13437.84380692.71100-0.661803.561802.61800HepG2TIA1
C20orf27ENSG00000101220.13831.09860552.935100.587802.502401.67520HepG2TUFM
C20orf27ENSG00000101220.13312.29480689.50640-1.142704.751403.94100HepG2U2AF1
C20orf27ENSG00000101220.131049.26290576.206700.8646018.1670016.83530HepG2UTP3
C20orf27ENSG00000101220.13389.54160625.27860-0.682707.069306.07650HepG2ZC3H8
C20orf27ENSG00000101220.13474.16690656.38780-0.469205.328904.63210HepG2ZNF622
C20orf27ENSG00000101220.13755.67500342.477501.1417021.5990020.12210K562AGGF1
C20orf27ENSG00000101220.13736.03250356.357301.046304.092803.29600K562AKAP8L
C20orf27ENSG00000101220.13616.291601068.56900-0.794009.198708.22970K562AQR
C20orf27ENSG00000101220.13520.96660373.893100.478503.734102.65970K562ATP5C1
C20orf27ENSG00000101220.13588.20650430.429400.450403.325202.27100K562BCLAF1
C20orf27ENSG00000101220.13103.67250231.83390-1.161105.366604.14010K562BOP1
C20orf27ENSG00000101220.13176.89160246.51930-0.478802.137301.43920K562CPSF6
C20orf27ENSG00000101220.13558.56030326.545100.774304.195502.85850K562CSTF2
C20orf27ENSG00000101220.13971.676901239.09980-0.350702.708401.74400K562CELF1
C20orf27ENSG00000101220.13701.83760566.715400.308402.482701.86050K562DDX47
C20orf27ENSG00000101220.13544.53120383.504000.505704.292003.16770K562DKC1
C20orf27ENSG00000101220.13465.66130775.86290-0.7365010.524209.26080K562EIF2S2
C20orf27ENSG00000101220.13271.42470138.436900.971207.181705.91120K562EIF3G
C20orf27ENSG00000101220.13285.38220426.54090-0.579802.167401.43710K562EIF4A3
C20orf27ENSG00000101220.13594.41160373.739500.669305.987804.70590K562FIP1L1
C20orf27ENSG00000101220.13138.17290316.86330-1.197403.426902.15630K562FKBP4
C20orf27ENSG00000101220.13120.80130250.80160-1.053906.876605.50280K562FMR1
C20orf27ENSG00000101220.13114.51140212.56580-0.892403.725002.65090K562FTO
C20orf27ENSG00000101220.13601.92810443.583000.440303.641902.96240K562FXR1
C20orf27ENSG00000101220.1322.75120104.49610-2.199409.718508.23430K562G3BP2
C20orf27ENSG00000101220.13163.61970235.37600-0.524602.249801.53300K562GPKOW
C20orf27ENSG00000101220.13172.25710364.31930-1.080604.795104.02970K562HNRNPC
C20orf27ENSG00000101220.13391.54200220.424500.828802.298701.38850K562IGF2BP2
C20orf27ENSG00000101220.13194.69410340.12800-0.804903.576701.92870K562ILF2
C20orf27ENSG00000101220.1369.08940200.95370-1.540308.463506.72240K562KRR1
C20orf27ENSG00000101220.13313.56800231.594400.437102.172201.42270K562MAGOH
C20orf27ENSG00000101220.13534.03470362.018400.560802.426401.44210K562MAK16
C20orf27ENSG00000101220.13527.00070231.115001.1891011.302309.32530K562MATR3
C20orf27ENSG00000101220.13230.55460425.93920-0.885507.066005.13490K562NCBP2
C20orf27ENSG00000101220.13589.25550320.945200.876502.734001.45270K562NONO
C20orf27ENSG00000101220.13809.20330424.316800.931309.192707.46370K562PPIG
C20orf27ENSG00000101220.13378.48490225.013200.750106.311705.34340K562PTBP1
C20orf27ENSG00000101220.13699.628701169.46340-0.741208.547306.58590K562PUM1
C20orf27ENSG00000101220.13541.68300353.452100.615804.596303.91930K562PUS1
C20orf27ENSG00000101220.1342.8664099.69610-1.217703.077801.57100K562RAVER1
C20orf27ENSG00000101220.13471.24620344.349800.452502.996002.38360K562RBM15
C20orf27ENSG00000101220.13592.77900388.612700.609103.509102.28310K562SAFB
C20orf27ENSG00000101220.13427.57000649.32760-0.602804.368503.36160K562SF3A3
C20orf27ENSG00000101220.1379.73360223.81190-1.489009.390007.52170K562SF3B1
C20orf27ENSG00000101220.13471.26970282.742900.737002.470001.51340K562SRFBP1
C20orf27ENSG00000101220.13377.43430220.595000.774705.938004.91040K562SRSF1
C20orf27ENSG00000101220.13242.14600152.094100.670803.084801.95850K562SRSF4
C20orf27ENSG00000101220.13316.99920208.352900.605303.549802.33480K562SRSF5
C20orf27ENSG00000101220.13433.43520562.24900-0.375402.590101.46040K562SRSF7
C20orf27ENSG00000101220.13347.09180490.32040-0.498402.822501.44810K562SSRP1
C20orf27ENSG00000101220.13200.43850369.73710-0.883303.227501.65140K562SUPT6H
C20orf27ENSG00000101220.1349.28630102.57300-1.057402.951301.42030K562TAF15
C20orf27ENSG00000101220.13333.65650223.241300.579703.299402.52520K562TARDBP
C20orf27ENSG00000101220.1351.40920108.89730-1.082903.743801.87370K562TBRG4
C20orf27ENSG00000101220.13415.23310215.345500.947209.185007.57970K562TIA1
C20orf27ENSG00000101220.13354.41710211.354100.745705.075803.50900K562TRA2A
C20orf27ENSG00000101220.1354.17770104.59010-0.949003.384402.49890K562U2AF2
C20orf27ENSG00000101220.13533.63070697.70960-0.386803.590902.78020K562UPF1
C20orf27ENSG00000101220.13156.00390314.92450-1.013403.902701.81570K562XPO5
C20orf27ENSG00000101220.13188.39290363.77250-0.949303.715901.76440K562YTHDC2
C20orf27ENSG00000101220.13965.096801203.90150-0.319002.078201.34160K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C20orf27 is not available on ENCORE database.





6 RBPs can affect the splicing of C20orf27 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC20orf27ENSG00000101220.13chr20-373504337351663734154373480537361153736254-0.109000.000020.00109excludedHepG2SF3A3
SEC20orf27ENSG00000101220.13chr20-373504337351663734154373480537361153736254-0.085000.000380.03306excludedHepG2IGF2BP3
A5SSC20orf27ENSG00000101220.13chr20-3740653374083337407283740833373918237393250.108000.000010.00030longerK562AQR
A5SSC20orf27ENSG00000101220.13chr20-374065337408333740728374083337391823739325-0.103000.000280.03342shorterK562PRPF8
A5SSC20orf27ENSG00000101220.13chr20-3740653374083337407283740833373918237393250.260000.000010.02193longerK562DDX55
MXEC20orf27ENSG00000101220.13chr20-37391823739325374072837408333736115373625437483093749034-0.105000.003920.065512includedHepG2SRSF1
MXEC20orf27ENSG00000101220.13chr20-37350433735166373611537362543734154373480537391823739325-0.206000.000000.000192includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C20orf27 is not avaliable on ENCORE database.