SCAPER

General Information

Gene Name       : SCAPER
Gene ID             : ENSG00000140386.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCAPER)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCAPERENSG00000140386.122.372.312.34ENCSR000AEF
HepG2SCAPERENSG00000140386.124.176.475.32ENCSR985KAT
K562SCAPERENSG00000140386.122.173.782.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCAPER is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCAPER RNA is bound by 8 proteins.  







eCLIP assay for SCAPER is not avaliable on ENCORE database.





8 proteins are bound to SCAPER RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157713422577134273-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.206114.56058HepG2BCLAF1
chr157702100777021081-3'-UTR,CDS,intron-Distal,intron-Proximal3.037534.93258HepG2AQR
chr157706731477067453-3'-UTR,CDS,intron-Distal,intron-Proximal4.641266.33775HepG2GRWD1
chr157709257777092704-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.473285.59833HepG2GRWD1
chr157708775277087782-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.422593.38968HepG2BCLAF1
chr157706424377064296-3'-UTR,CDS,intron-Distal,intron-Proximal3.130113.71797HepG2BCLAF1
chr157713416177134272-3'-UTR,5'-UTR,CDS,intron-Distal3.215043.41665HepG2GRWD1
chr157699519776995313-3'-UTR,CDS,intron-Distal,intron-Proximal3.076283.41665HepG2GRWD1
chr157705925777059287-3'-UTR,CDS,intron-Distal,intron-Proximal4.665304.78529HepG2BCLAF1
chr157706730277067446-3'-UTR,CDS,intron-Distal,intron-Proximal3.646364.79276K562ZNF622
chr157699520276995326-3'-UTR,CDS,intron-Distal,intron-Proximal3.336907.66871HepG2BCLAF1
chr157706735177067417-3'-UTR,CDS,intron-Distal,intron-Proximal3.512875.56491HepG2BCLAF1
chr157705791277057980-3'-UTR,CDS,intron-Distal,intron-Proximal3.344365.79905HepG2BCLAF1
chr157713409977134187-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.6301110.24913HepG2BCLAF1
chr157699824376998314-3'-UTR,CDS,intron-Distal,intron-Proximal4.826266.13315HepG2BCLAF1
chr157709258677092678-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.190613.42031HepG2BCLAF1
chr157709687277096935-5'-UTR,CDS,intron-Distal,intron-Proximal3.574596.06436HepG2BCLAF1
chr157715014977150218-5'-UTR,CDS,intron-Distal,intron-Proximal3.329656.91872HepG2BCLAF1
chr157686650176866600-CDS,intron-Distal4.431557.49468HepG2BCLAF1
chr157715475477154877-CDS,intron-Distal,intron-Proximal4.5045812.43877HepG2BCLAF1
chr157695801976958116-CDS,intron-Distal,intron-Proximal4.8193611.47391HepG2BCLAF1
chr157712746277127519-intron-Distal4.457254.48623K562EXOSC5
chr157667149776671642-intron-Distal3.770575.65979HepG2PTBP1
chr157694713976947232-intron-Distal4.403765.31529HepG2SUGP2
chr157712821877128277-intron-Distal4.815356.73731K562EXOSC5
chr157697092876970990-intron-Distal3.529843.00914HepG2PTBP1
chr157697448376974563-intron-Distal4.297043.97974HepG2RBFOX2
chr157697099076971047-intron-Distal4.225473.09122HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCAPER is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCAPER is not available on ENCORE database.

  • 66 RBPs can affect the levels of SCAPER.  








The Knockdown/knockout RNA-Seq assay for SCAPER is not available on ENCORE database.





66 RBPs can affect the gene expression of SCAPER :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCAPERENSG00000140386.8214.27740368.50610-0.782207.574906.66950HepG2ACO1
SCAPERENSG00000140386.8427.54820630.98330-0.561503.330402.75450HepG2AKAP1
SCAPERENSG00000140386.8270.24670370.26070-0.454302.993802.19960HepG2AKAP8L
SCAPERENSG00000140386.8565.46950419.582800.430403.820703.03820HepG2AUH
SCAPERENSG00000140386.8372.54950496.00980-0.412902.139901.45410HepG2CIRBP
SCAPERENSG00000140386.8172.83460368.45400-1.0921013.2380012.00540HepG2CKAP4
SCAPERENSG00000140386.8191.85620319.29690-0.734903.275202.43680HepG2CNOT7
SCAPERENSG00000140386.8199.15040364.74540-0.873007.997407.01190HepG2CELF1
SCAPERENSG00000140386.8218.80470340.82820-0.639405.527804.40050HepG2DDX19B
SCAPERENSG00000140386.8191.17580275.62170-0.527802.674601.53590HepG2DDX1
SCAPERENSG00000140386.8369.51580604.40850-0.709905.509904.65410HepG2DDX3X
SCAPERENSG00000140386.8473.06410349.191500.437902.555701.30950HepG2DDX47
SCAPERENSG00000140386.8177.33380267.88860-0.595203.914903.16670HepG2DNAJC2
SCAPERENSG00000140386.8383.70480499.11710-0.379401.843401.34690HepG2EIF2S1
SCAPERENSG00000140386.8145.45870237.93640-0.710003.278702.30070HepG2EIF3D
SCAPERENSG00000140386.8358.93030551.55390-0.619803.980003.21770HepG2EIF4A3
SCAPERENSG00000140386.8241.24830537.07080-1.154609.132607.92200HepG2EIF4B
SCAPERENSG00000140386.8245.88300360.12120-0.550503.424002.49310HepG2EWSR1
SCAPERENSG00000140386.8281.87730406.71340-0.528902.783902.01090HepG2FIP1L1
SCAPERENSG00000140386.8303.84560556.58290-0.873307.672606.56350HepG2FXR1
SCAPERENSG00000140386.8377.78840516.26590-0.450502.418901.79530HepG2G3BP1
SCAPERENSG00000140386.8408.80510548.14310-0.423102.322301.51020HepG2G3BP2
SCAPERENSG00000140386.8156.70810269.96720-0.784703.902202.25150HepG2HNRNPA0
SCAPERENSG00000140386.8188.83700303.49900-0.684603.710502.91750HepG2HNRNPC
SCAPERENSG00000140386.8301.78570218.500100.465802.402001.73060HepG2HNRNPF
SCAPERENSG00000140386.8251.27940522.87430-1.0572010.518409.23530HepG2HNRNPK
SCAPERENSG00000140386.8389.05020264.755700.555202.976802.32740HepG2HNRNPLL
SCAPERENSG00000140386.8149.74620280.54670-0.905706.407305.04010HepG2HNRNPM
SCAPERENSG00000140386.8301.19600524.75650-0.800906.478105.48560HepG2IGF2BP2
SCAPERENSG00000140386.8298.81520472.51590-0.661103.896302.90710HepG2LARP4
SCAPERENSG00000140386.8334.11160556.77770-0.736805.565704.64520HepG2MAGOH
SCAPERENSG00000140386.8253.99680559.87950-1.1403010.762509.57700HepG2MATR3
SCAPERENSG00000140386.8143.94310249.02830-0.790802.639401.61070HepG2METAP2
SCAPERENSG00000140386.8176.75970573.05620-1.6969022.4789020.78540HepG2NCBP2
SCAPERENSG00000140386.8201.71790298.41910-0.565003.574302.62330HepG2PARN
SCAPERENSG00000140386.8275.44440508.16020-0.8835011.1528010.06760HepG2PCBP1
SCAPERENSG00000140386.8221.45930344.87460-0.639002.346701.38700HepG2PCBP2
SCAPERENSG00000140386.8370.62420244.366000.600804.766103.78200HepG2PRPF4
SCAPERENSG00000140386.8287.99770517.06180-0.8443010.066209.15010HepG2PTBP1
SCAPERENSG00000140386.8281.51130394.07960-0.485303.584502.92750HepG2PUM1
SCAPERENSG00000140386.8268.54210375.35150-0.483103.519502.84310HepG2PUS1
SCAPERENSG00000140386.8757.06290560.012500.434903.653602.95060HepG2QKI
SCAPERENSG00000140386.8203.17460332.90370-0.712402.344001.69150HepG2RAVER1
SCAPERENSG00000140386.8301.66940402.61150-0.416402.269501.78730HepG2RBM22
SCAPERENSG00000140386.8320.35570575.44860-0.8450010.285009.36320HepG2NELFE
SCAPERENSG00000140386.8406.91770535.93680-0.397302.970902.33500HepG2RECQL
SCAPERENSG00000140386.8139.08010231.51460-0.735203.765603.05860HepG2RPS19
SCAPERENSG00000140386.8131.15590232.37360-0.825204.497103.31360HepG2SERBP1
SCAPERENSG00000140386.8260.36330400.84120-0.622503.536302.77050HepG2SF3A3
SCAPERENSG00000140386.8334.09450538.34640-0.688307.294006.40660HepG2SF3B4
SCAPERENSG00000140386.8187.52550313.09840-0.739505.986005.09610HepG2SMN1
SCAPERENSG00000140386.8344.49740561.90960-0.705807.730307.03220HepG2SRSF1
SCAPERENSG00000140386.8134.73480281.99280-1.065505.882704.37980HepG2SRSF3
SCAPERENSG00000140386.8225.71290366.53860-0.699505.646504.79870HepG2SRSF5
SCAPERENSG00000140386.8326.83570457.13690-0.484104.020803.37910HepG2SRSF9
SCAPERENSG00000140386.8192.88480278.87040-0.531902.324501.33140HepG2STIP1
SCAPERENSG00000140386.8303.24400416.85290-0.459103.216602.55610HepG2SUCLG1
SCAPERENSG00000140386.8203.88880295.57600-0.535703.316502.71110HepG2TRIM56
SCAPERENSG00000140386.851.56710117.03820-1.182505.186404.13900HepG2UCHL5
SCAPERENSG00000140386.8274.39390365.39090-0.413202.496801.49390HepG2UTP18
SCAPERENSG00000140386.8201.37720343.20680-0.769206.239405.39880HepG2UTP3
SCAPERENSG00000140386.8234.25840366.01680-0.643802.359901.38130HepG2XRCC6
SCAPERENSG00000140386.8351.14070241.145000.542003.999703.21630HepG2ZC3H8
SCAPERENSG00000140386.8138.61390199.20320-0.523201.829301.33280K562AQR
SCAPERENSG00000140386.8105.07650155.79880-0.568202.068501.53120K562FXR1
SCAPERENSG00000140386.889.40060137.20640-0.618001.859701.35980K562HNRNPC
SCAPERENSG00000140386.8148.59680217.91550-0.552402.464301.47410K562HNRNPL
SCAPERENSG00000140386.8137.94210208.34000-0.594902.773101.84890K562MATR3
SCAPERENSG00000140386.8146.31670202.84430-0.471301.996601.41570K562PTBP1
SCAPERENSG00000140386.8102.43560198.86380-0.957105.155404.19490K562SRSF1
SCAPERENSG00000140386.8137.20590201.24420-0.552602.280601.63480K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCAPER is not available on ENCORE database.





4 RBPs can affect the splicing of SCAPER :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCAPERENSG00000140386.8chr15-7676181376761932767264187672665176763552767636760.156000.000000.00004includedHepG2U2AF2
SESCAPERENSG00000140386.8chr15-7715014977150220771340747713427277154756771548740.192000.000470.06733includedK562LARP4
SESCAPERENSG00000140386.8chr15-7715014977150220771340747713427277154756771548740.192000.000510.07861includedK562NPM1
MXESCAPERENSG00000140386.8chr15-7715014977150220771547567715487477134074771342727717615277176217-0.287000.000100.024102includedK562NPM1
MXESCAPERENSG00000140386.8chr15-7715014977150220771547567715487477134074771342727717615277176217-0.293000.000020.001562includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCAPER is not avaliable on ENCORE database.