CCDC18

General Information

Gene Name       : CCDC18
Gene ID             : ENSG00000122483.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC18)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC18ENSG00000122483.1718.3514.5016.43ENCSR000AEF
HepG2CCDC18ENSG00000122483.176.828.837.83ENCSR985KAT
K562CCDC18ENSG00000122483.1716.9016.3616.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC18 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC18 RNA is bound by 10 proteins.  







eCLIP assay for CCDC18 is not avaliable on ENCORE database.





10 proteins are bound to CCDC18 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr19368222693682274+3'-UTR,5'-UTR,CDS4.198863.38968HepG2BCLAF1
chr19368043293680510+3'-UTR,5'-UTR,CDS3.360846.36421K562ZNF622
chr19367641093676472+5'-UTR,CDS,intron-Distal3.824315.80935K562ZNF622
chr19364948193649583+5'-UTR,CDS,intron-Distal,intron-Proximal4.930434.90235K562SF3B4
chr19367270193672754+5'-UTR,CDS3.129584.00731K562UCHL5
chr19364903193649127+5'-UTR,CDS,intron-Proximal4.204875.29694K562EFTUD2
chr19364901993649146+5'-UTR,CDS,intron-Proximal3.308434.91549K562PRPF8
chr19364897093649025+5'-UTR,CDS3.144584.30396K562UCHL5
chr19365190493651956+5'-UTR,CDS3.475843.66187K562ZNF622
chr19369194693692000+CDS4.475844.43680K562ZNF622
chr19366310693663209+intron-Distal3.789953.69885K562KHDRBS1
chr19367612493676184+intron-Distal3.894457.90970K562KHSRP
chr19367343293673525+intron-Distal4.515996.51328K562KHSRP
chr19371760293717702+intron-Distal4.213777.56258HepG2QKI
chr19367599493676085+intron-Distal3.372908.66097K562KHSRP
chr19371753193717620+intron-Distal4.494304.40847HepG2PTBP1
chr19367624193676272+intron-Distal,intron-Proximal3.778043.49011K562KHSRP
chr19371398293714036+intron-Distal4.450016.09994K562KHSRP
chr19367571693675812+intron-Distal4.937817.01496K562KHSRP
chr19371753593717610+intron-Distal5.243305.89856K562PTBP1
chr19365947693659533+intron-Distal3.223463.20886K562PRPF8
chr19367608593676124+intron-Distal4.727246.73684K562KHSRP
chr19371403693714166+intron-Distal4.702646.34785K562KHSRP
chr19371755593717684+intron-Distal5.713248.10458K562QKI
chr19367497993675061+intron-Distal3.390654.30679K562KHSRP
chr19367564893675716+intron-Distal3.549064.98593K562KHSRP
chr19364832193648380+intron-Distal4.131304.79477K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC18 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC18 is not available on ENCORE database.

  • 114 RBPs can affect the levels of CCDC18.  








The Knockdown/knockout RNA-Seq assay for CCDC18 is not available on ENCORE database.





114 RBPs can affect the gene expression of CCDC18 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC18ENSG00000122483.1364.84670126.29470-0.961702.526301.52960HepG2AKAP8
CCDC18ENSG00000122483.13190.76630264.70390-0.472602.500001.76690HepG2AKAP8L
CCDC18ENSG00000122483.13172.52970360.21680-1.062007.546906.50380HepG2AUH
CCDC18ENSG00000122483.1397.68570230.43440-1.238105.469004.24480HepG2BCLAF1
CCDC18ENSG00000122483.13109.08940431.53920-1.9840026.8699025.32560HepG2BOP1
CCDC18ENSG00000122483.13124.45090263.41910-1.081809.222408.14610HepG2CKAP4
CCDC18ENSG00000122483.13241.04160396.16840-0.716804.740903.86140HepG2CPSF6
CCDC18ENSG00000122483.13178.45320311.96990-0.805906.465405.56140HepG2CELF1
CCDC18ENSG00000122483.13166.86860335.49620-1.0076010.885209.56790HepG2DAZAP1
CCDC18ENSG00000122483.1359.81880147.45550-1.301602.187001.62380HepG2DDX3X
CCDC18ENSG00000122483.13167.39560260.67080-0.639002.094901.41240HepG2DDX55
CCDC18ENSG00000122483.13229.21790449.88100-0.972805.493204.13090HepG2DDX59
CCDC18ENSG00000122483.1329.80330126.57540-2.086503.850103.13120HepG2DDX6
CCDC18ENSG00000122483.13182.54470252.03360-0.465402.206801.59060HepG2DKC1
CCDC18ENSG00000122483.1386.44390180.33210-1.060804.712403.81580HepG2DNAJC21
CCDC18ENSG00000122483.1396.18680178.68870-0.893503.939003.18860HepG2DNAJC2
CCDC18ENSG00000122483.13101.55790175.00800-0.785102.613501.54220HepG2AGO1
CCDC18ENSG00000122483.1348.92490121.77120-1.315502.013901.49860HepG2EIF2S1
CCDC18ENSG00000122483.13241.14500330.94280-0.456702.799201.95770HepG2EIF4G1
CCDC18ENSG00000122483.13219.26720317.03010-0.531902.815201.99550HepG2EIF4G2
CCDC18ENSG00000122483.13181.11060257.45810-0.507502.411501.63370HepG2EWSR1
CCDC18ENSG00000122483.13240.44970135.688100.825303.415602.65190HepG2FXR1
CCDC18ENSG00000122483.13212.56960449.06570-1.079009.036107.92160HepG2GPKOW
CCDC18ENSG00000122483.13146.99230251.52360-0.775005.649104.30680HepG2HDGF
CCDC18ENSG00000122483.13175.58680302.56200-0.785005.916904.92030HepG2HNRNPF
CCDC18ENSG00000122483.13133.92790305.62710-1.1903012.5359011.19600HepG2HNRNPL
CCDC18ENSG00000122483.13236.63740428.55370-0.856806.380905.46970HepG2HNRNPLL
CCDC18ENSG00000122483.13187.67950297.93960-0.666704.057703.19440HepG2IGF2BP1
CCDC18ENSG00000122483.13152.81060240.83290-0.656304.167802.92850HepG2KIF1C
CCDC18ENSG00000122483.13254.27710135.734800.905503.093602.40010HepG2MAGOH
CCDC18ENSG00000122483.13214.43530136.516200.651402.020301.47630HepG2MATR3
CCDC18ENSG00000122483.13203.80840332.67450-0.706903.008402.21370HepG2NOL12
CCDC18ENSG00000122483.13117.83730219.95940-0.900404.264102.99150HepG2PCBP2
CCDC18ENSG00000122483.13216.76200126.719800.774402.437101.91800HepG2PTBP1
CCDC18ENSG00000122483.13157.54470317.55260-1.011208.114007.16530HepG2PUF60
CCDC18ENSG00000122483.13271.13920337.07920-0.314101.813701.31120HepG2PUM1
CCDC18ENSG00000122483.1398.90880212.28030-1.101804.352103.47830HepG2RAVER1
CCDC18ENSG00000122483.13229.59600388.53330-0.758906.065304.85690HepG2RBM15
CCDC18ENSG00000122483.13186.23330345.65060-0.892206.948706.21570HepG2RBM22
CCDC18ENSG00000122483.13138.5071071.867200.946503.418301.72370HepG2RBM47
CCDC18ENSG00000122483.13387.73270141.032101.4589017.2334016.10590HepG2NELFE
CCDC18ENSG00000122483.13295.92160131.342801.1718010.252409.18180HepG2RECQL
CCDC18ENSG00000122483.13135.34900325.89820-1.2677011.058309.84860HepG2RPLP0
CCDC18ENSG00000122483.1398.06880176.27230-0.845903.896103.17790HepG2RPS19
CCDC18ENSG00000122483.1366.96440199.04930-1.571707.827006.58830HepG2RRP9
CCDC18ENSG00000122483.13167.33410331.23120-0.985104.846203.93890HepG2SF3A3
CCDC18ENSG00000122483.13206.18930424.17080-1.040709.453508.22450HepG2SF3B1
CCDC18ENSG00000122483.13228.88180304.44870-0.411602.392701.73400HepG2SLBP
CCDC18ENSG00000122483.13126.38550216.36840-0.775703.544202.44560HepG2SMNDC1
CCDC18ENSG00000122483.13205.54400471.96890-1.199208.558207.18890HepG2SNRNP70
CCDC18ENSG00000122483.13180.26480390.41330-1.1149012.3989011.54010HepG2SRFBP1
CCDC18ENSG00000122483.13333.02170137.715201.2738012.3623011.51610HepG2SRSF1
CCDC18ENSG00000122483.13311.26190456.44540-0.552302.734401.74000HepG2SRSF3
CCDC18ENSG00000122483.13233.06720313.51660-0.427802.495101.89610HepG2SRSF5
CCDC18ENSG00000122483.13140.77700297.24910-1.078309.675608.50850HepG2SRSF7
CCDC18ENSG00000122483.1374.81920112.03470-0.582501.822001.35650HepG2SRSF9
CCDC18ENSG00000122483.13146.75310259.52930-0.822503.071702.36320HepG2SUPV3L1
CCDC18ENSG00000122483.13313.18740123.771101.3393013.6114012.50520HepG2TAF15
CCDC18ENSG00000122483.13147.09560417.76560-1.5059016.6363015.11670HepG2TARDBP
CCDC18ENSG00000122483.1378.88850173.97500-1.141004.766503.50870HepG2TFIP11
CCDC18ENSG00000122483.13126.80990195.52100-0.624702.297201.83290HepG2TIAL1
CCDC18ENSG00000122483.13358.35200213.128100.749602.850601.36000HepG2TRA2A
CCDC18ENSG00000122483.1384.23280197.20060-1.227204.106303.44690HepG2TRIM56
CCDC18ENSG00000122483.13122.54500597.05730-2.284603.612402.48100HepG2U2AF2
CCDC18ENSG00000122483.1379.30870153.33620-0.951103.803002.91350HepG2UCHL5
CCDC18ENSG00000122483.13141.48240293.74920-1.054007.437306.38480HepG2UPF1
CCDC18ENSG00000122483.13183.85360301.94960-0.715804.057702.81630HepG2UTP18
CCDC18ENSG00000122483.13207.12040283.60670-0.453402.337701.77690HepG2UTP3
CCDC18ENSG00000122483.1369.32950323.07100-2.2203021.7258020.55020HepG2ZNF622
CCDC18ENSG00000122483.13346.005801005.04530-1.5384042.6795040.49350K562AGGF1
CCDC18ENSG00000122483.13309.59140442.24260-0.514504.358102.42390K562AKAP1
CCDC18ENSG00000122483.13714.003701104.33080-0.629207.342105.54050K562AKAP8
CCDC18ENSG00000122483.13440.836201045.77990-1.2463016.7052014.85740K562AKAP8L
CCDC18ENSG00000122483.13373.672901063.53900-1.5090026.6647025.04080K562AQR
CCDC18ENSG00000122483.13826.359801097.24600-0.409003.264702.26650K562ATP5C1
CCDC18ENSG00000122483.13424.64710556.64400-0.390503.125302.10870K562BCLAF1
CCDC18ENSG00000122483.13449.37990808.09630-0.846609.103207.47250K562BOP1
CCDC18ENSG00000122483.13844.813401201.13380-0.507706.118804.33680K562CCDC124
CCDC18ENSG00000122483.13605.714801015.90750-0.746103.432501.79940K562CKAP4
CCDC18ENSG00000122483.13880.694801604.55770-0.865506.411804.73930K562CNOT7
CCDC18ENSG00000122483.13598.96500859.22540-0.520605.080304.02270K562CPSF6
CCDC18ENSG00000122483.13285.27090448.05030-0.651305.232303.74130K562DDX3X
CCDC18ENSG00000122483.131028.567001269.45610-0.303602.681802.03890K562DDX47
CCDC18ENSG00000122483.13328.34920454.24560-0.468203.603602.05650K562DDX6
CCDC18ENSG00000122483.13793.765401125.42970-0.503706.930505.43710K562DKC1
CCDC18ENSG00000122483.13267.97770461.18670-0.783205.970104.58980K562EFTUD2
CCDC18ENSG00000122483.13293.61040493.87880-0.750304.820003.40690K562EIF3D
CCDC18ENSG00000122483.13488.36530637.24080-0.383902.989102.16150K562EIF3G
CCDC18ENSG00000122483.13348.72790468.07290-0.424602.364601.60430K562EIF4A3
CCDC18ENSG00000122483.13264.49330408.56160-0.627304.930903.11030K562EWSR1
CCDC18ENSG00000122483.13559.51450850.20740-0.603602.807901.95260K562FIP1L1
CCDC18ENSG00000122483.13599.97530874.26630-0.543204.647203.53500K562FMR1
CCDC18ENSG00000122483.13319.10150441.57300-0.468603.546801.49780K562FUBP3
CCDC18ENSG00000122483.13826.10250559.888200.561102.694901.99910K562G3BP2
CCDC18ENSG00000122483.13640.42810802.61350-0.325702.625701.51420K562GLRX3
CCDC18ENSG00000122483.13400.97340820.33850-1.0327014.5354012.67810K562GPKOW
CCDC18ENSG00000122483.13520.805701079.56570-1.051608.393707.06440K562GRSF1
CCDC18ENSG00000122483.13786.691201217.32110-0.629802.578501.41280K562HNRNPA2B1
CCDC18ENSG00000122483.13559.073501147.32300-1.0372014.9662012.42420K562HNRNPL
CCDC18ENSG00000122483.13381.46430674.59460-0.822506.952305.02970K562IGF2BP2
CCDC18ENSG00000122483.13497.46640686.19040-0.464003.650702.24140K562IGF2BP3
CCDC18ENSG00000122483.13761.468101109.88730-0.543605.266704.05270K562KIF1C
CCDC18ENSG00000122483.13367.67200700.49370-0.930007.484905.86760K562KRR1
CCDC18ENSG00000122483.13700.222001062.39190-0.601406.141304.29810K562MAK16
CCDC18ENSG00000122483.13821.428401243.34670-0.598007.165505.57040K562MBNL1
CCDC18ENSG00000122483.13592.70960800.74630-0.434003.299402.34170K562METAP2
CCDC18ENSG00000122483.131254.258701610.90720-0.361002.675001.56560K562MSI2
CCDC18ENSG00000122483.13610.11360843.83830-0.467905.627604.50040K562MTPAP
CCDC18ENSG00000122483.13487.17210871.49130-0.839106.988305.34460K562NAA15
CCDC18ENSG00000122483.13744.04840937.60920-0.333603.920803.05150K562NSUN2
CCDC18ENSG00000122483.13608.796301065.30420-0.807203.886202.65740K562PABPN1
CCDC18ENSG00000122483.13442.50210630.90610-0.511703.803702.65740K562PCBP2
CCDC18ENSG00000122483.13528.90800965.04250-0.867604.981003.82770K562PPIG
CCDC18ENSG00000122483.13610.838401267.01260-1.052605.421503.17230K562PPP1R8
CCDC18ENSG00000122483.13244.71940448.78560-0.874906.695405.52890K562PRPF8
CCDC18ENSG00000122483.13403.76210688.89150-0.770809.418708.24370K562PTBP1
CCDC18ENSG00000122483.131238.504901648.94860-0.412902.786401.96790K562PUF60
CCDC18ENSG00000122483.13424.852101037.23590-1.2877022.4602020.93720K562PUS1
CCDC18ENSG00000122483.13463.402301010.53960-1.1248021.0238019.33600K562RBM15
CCDC18ENSG00000122483.13359.01100660.61370-0.8798010.192108.42110K562RBM22
CCDC18ENSG00000122483.13740.411501310.67690-0.823903.665601.83110K562RBM39
CCDC18ENSG00000122483.13276.67770374.49440-0.436702.292801.39450K562RCC2
CCDC18ENSG00000122483.13285.00810457.20210-0.681803.957502.97740K562RPS19
CCDC18ENSG00000122483.13957.550401461.55460-0.610103.616501.81790K562SBDS
CCDC18ENSG00000122483.13342.42810974.53170-1.508908.403105.94040K562SF1
CCDC18ENSG00000122483.13605.61910925.13770-0.611308.503507.13240K562SF3A3
CCDC18ENSG00000122483.13508.00490780.20850-0.619002.723001.75660K562SF3B1
CCDC18ENSG00000122483.13295.61580583.14590-0.980102.411401.61600K562SF3B4
CCDC18ENSG00000122483.13650.291701188.47700-0.870003.750102.14420K562SFPQ
CCDC18ENSG00000122483.13555.939501118.74860-1.008905.166803.31710K562SNRNP200
CCDC18ENSG00000122483.13254.66500355.02140-0.479302.397801.46030K562SRFBP1
CCDC18ENSG00000122483.13473.98440675.33330-0.510804.180703.31930K562SRSF1
CCDC18ENSG00000122483.13441.29070637.77650-0.531304.193702.85620K562SRSF5
CCDC18ENSG00000122483.13487.30400620.09750-0.347702.787001.61860K562SRSF7
CCDC18ENSG00000122483.13820.528401338.50060-0.706002.879801.41420K562SUPT6H
CCDC18ENSG00000122483.13272.06820434.63500-0.675804.072402.82080K562SUPV3L1
CCDC18ENSG00000122483.13492.93260683.50310-0.471603.349502.56910K562TARDBP
CCDC18ENSG00000122483.13279.57560394.91860-0.498302.523501.63410K562TIAL1
CCDC18ENSG00000122483.13243.01620419.43440-0.787406.025504.50870K562TRIM56
CCDC18ENSG00000122483.13716.69770947.68530-0.403004.448202.83410K562TROVE2
CCDC18ENSG00000122483.13607.068301051.53870-0.792604.319302.57420K562UTP18
CCDC18ENSG00000122483.13735.28780884.58160-0.266702.476601.67310K562WDR43
CCDC18ENSG00000122483.13994.078101260.07160-0.342102.843701.53290K562WRN
CCDC18ENSG00000122483.13798.426501198.12490-0.585506.677105.24690K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC18 is not available on ENCORE database.





15 RBPs can affect the splicing of CCDC18 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC18ENSG00000122483.13chr1+9367106693671188936674489366754593672663936729550.378000.000790.01711includedK562SRSF1
SECCDC18ENSG00000122483.13chr1+936710669367118893667448936675459367266393672955-0.677000.000010.00021excludedHepG2U2AF2
SECCDC18ENSG00000122483.13chr1+936776579367781893676406936764839368029993680523-0.133000.000270.00466excludedHepG2U2AF2
SECCDC18ENSG00000122483.13chr1+936495349364970393648916936490529365190193651955-0.237000.001420.01636excludedK562AQR
SECCDC18ENSG00000122483.13chr1+9367106693671188936674489366754593672663936729550.512000.000020.00189includedK562FXR1
SECCDC18ENSG00000122483.13chr1+936776579367781893672663936729559368030293680523-0.237000.003200.04406excludedK562PUS1
SECCDC18ENSG00000122483.13chr1+9367765793677818936763589367648393680302936805230.071000.000820.09125includedK562LARP4
SECCDC18ENSG00000122483.13chr1+9370281893702937937018049370194793704866937050300.348000.000380.03128includedHepG2HNRNPL
SECCDC18ENSG00000122483.13chr1+9370281893702937937018049370194793704866937050300.546000.000000.00001includedK562HNRNPL
SECCDC18ENSG00000122483.13chr1+936710669367118893667448936675459367266393672955-0.345000.001170.02287excludedK562U2AF2
SECCDC18ENSG00000122483.13chr1+937116619371176193705239937054539371239493712511-0.138000.003740.07485excludedK562AGGF1
SECCDC18ENSG00000122483.13chr1+936710669367118893667448936675459367266393672955-0.301000.002490.08076excludedK562SF3B1
SECCDC18ENSG00000122483.13chr1+937028189370293793701804937019479370486693705030-0.200000.000010.00312excludedK562EIF3G
SECCDC18ENSG00000122483.13chr1+936710669367118893667448936675459367266393672955-0.373000.007170.09141excludedK562HNRNPC
A3SSCCDC18ENSG00000122483.13chr1+9367629193676483936763589367648393672663936729550.065000.012520.06406longerK562AQR
MXECCDC18ENSG00000122483.13chr1+93691889936920069369798293698150936874159368749393701804937019470.122000.000300.007841includedK562DROSHA
MXECCDC18ENSG00000122483.13chr1+9371239493712511937200279372017193711661937117619372189193722095-0.197000.010610.095932includedK562U2AF2
MXECCDC18ENSG00000122483.13chr1+93676358936764839367765793677818936726639367295593680302936805230.430000.000000.000011includedHepG2U2AF2
MXECCDC18ENSG00000122483.13chr1+93676406936764839367765793677818936726639367295593680302936805230.617000.000000.000001includedHepG2U2AF2
MXECCDC18ENSG00000122483.13chr1+93676358936764839367765793677818936726639367295593680302936805230.176000.001190.040401includedHepG2RBFOX2
MXECCDC18ENSG00000122483.13chr1+9368329493683426936858549368602793682192936823039368716593687300-0.095000.000510.021592includedHepG2RBFOX2
MXECCDC18ENSG00000122483.13chr1+9368329493683426936858549368602793682192936823039368716593687300-0.205000.000640.081132includedK562LSM11
MXECCDC18ENSG00000122483.13chr1+93676358936764839367765793677818936726639367295593680302936805230.141000.000430.014561includedK562FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC18 is not avaliable on ENCORE database.