TRAPPC3

General Information

Gene Name : TRAPPC3
Gene ID : ENSG00000054116.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRAPPC3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRAPPC3	ENSG00000054116.11	59.16	52.98	56.07	ENCSR000AEF
HepG2	TRAPPC3	ENSG00000054116.11	32.24	42.96	37.60	ENCSR985KAT
K562	TRAPPC3	ENSG00000054116.11	92.06	93.94	93.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRAPPC3 is not avaliable on ENCORE database.

Proteins bound to RNA

TRAPPC3 RNA is bound by 21 proteins.

eCLIP assay for TRAPPC3 is not avaliable on ENCORE database.

21 proteins are bound to TRAPPC3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	36602707	36602809	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52880	6.07797	HepG2	LARP4
chr1	36602263	36602407	-	3'-UTR,intron-Distal	4.38869	19.72434	K562	UPF1
chr1	36602646	36602747	-	3'-UTR,intron-Distal,intron-Proximal	4.97728	26.41506	K562	PUM2
chr1	36602283	36602386	-	3'-UTR,intron-Distal	4.90210	21.49152	K562	PABPC4
chr1	36602286	36602411	-	3'-UTR,intron-Distal	3.13601	3.20756	HepG2	UPF1
chr1	36602456	36602523	-	3'-UTR,intron-Distal,intron-Proximal	4.55542	5.33201	K562	IGF2BP1
chr1	36602294	36602444	-	3'-UTR,intron-Distal	5.12495	8.80329	HepG2	PRPF4
chr1	36605759	36605814	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.90823	6.86590	K562	SF3B4
chr1	36605690	36605768	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.00474	13.37398	K562	DDX3X
chr1	36602441	36602499	-	3'-UTR,intron-Distal,intron-Proximal	3.35286	4.09267	K562	FAM120A
chr1	36602292	36602402	-	3'-UTR,intron-Distal	4.04768	31.95711	K562	DDX6
chr1	36605617	36605683	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.53316	5.80866	K562	BUD13
chr1	36602253	36602406	-	3'-UTR,intron-Distal	3.73458	36.96581	K562	FAM120A
chr1	36602647	36602698	-	3'-UTR,intron-Distal,intron-Proximal	3.99333	3.67607	K562	YBX3
chr1	36602285	36602412	-	3'-UTR,intron-Distal	5.14612	38.63257	K562	GTF2F1
chr1	36605617	36605682	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.61414	3.47285	K562	PRPF8
chr1	36602633	36602750	-	3'-UTR,intron-Distal,intron-Proximal	4.60907	6.56044	K562	IGF2BP1
chr1	36602310	36602393	-	3'-UTR,intron-Distal	3.83572	5.54337	K562	APOBEC3C
chr1	36614867	36614916	-	5'-UTR,intron-Distal,intron-Proximal	3.20368	3.50696	K562	BUD13
chr1	36614935	36615080	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.04113	30.87416	K562	DDX3X
chr1	36614953	36615082	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.10527	13.85526	HepG2	DDX3X
chr1	36605392	36605418	-	CDS,intron-Distal	5.07768	6.69401	K562	DDX3X
chr1	36603394	36603491	-	CDS,intron-Distal,intron-Proximal	3.74367	5.75263	HepG2	LARP4
chr1	36605385	36605448	-	CDS,intron-Distal,intron-Proximal	4.13850	4.15711	K562	AQR
chr1	36603379	36603410	-	CDS,intron-Distal,intron-Proximal	5.12613	6.04760	K562	AQR
chr1	36602878	36602944	-	CDS,intron-Distal	3.36263	5.05651	K562	U2AF2
chr1	36603284	36603438	-	CDS,intron-Distal,intron-Proximal	5.20681	27.02328	K562	EFTUD2
chr1	36603339	36603441	-	CDS,intron-Distal,intron-Proximal	3.84602	13.72907	K562	PRPF8
chr1	36602909	36602994	-	CDS,intron-Distal	3.76655	11.20985	K562	SF3B4
chr1	36605310	36605394	-	CDS,intron-Distal,intron-Proximal	3.46616	3.34848	HepG2	PPIG
chr1	36603272	36603337	-	intron-Distal,intron-Proximal	5.18190	8.72920	K562	PRPF8
chr1	36605626	36605637	-	intron-Distal,intron-Proximal	5.86598	9.63974	K562	AQR
chr1	36603331	36603382	-	intron-Distal,intron-Proximal	3.85156	7.00860	K562	TIA1
chr1	36605663	36605669	-	intron-Distal,intron-Proximal	5.63850	7.63570	K562	AQR
chr1	36605637	36605663	-	intron-Distal,intron-Proximal	5.94475	10.84943	K562	AQR
chr1	36603350	36603379	-	intron-Distal,intron-Proximal	4.12363	5.63763	K562	AQR
chr1	36612443	36612529	-	intron-Distal	3.73686	3.06194	K562	ILF3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for TRAPPC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRAPPC3 is not available on ENCORE database.
39 RBPs can affect the levels of TRAPPC3.

The Knockdown/knockout RNA-Seq assay for TRAPPC3 is not available on ENCORE database.

39 RBPs can affect the gene expression of TRAPPC3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRAPPC3	ENSG00000054116.7	1415.91810	935.95960	0.59710	4.93280	4.24950	HepG2	AKAP1
TRAPPC3	ENSG00000054116.7	500.95110	358.40070	0.48300	3.02740	2.40430	HepG2	BOP1
TRAPPC3	ENSG00000054116.7	985.55870	735.78360	0.42160	3.00650	2.20140	HepG2	CIRBP
TRAPPC3	ENSG00000054116.7	833.18240	586.88030	0.50550	2.42700	1.71410	HepG2	CNOT7
TRAPPC3	ENSG00000054116.7	984.81690	762.65140	0.36870	3.79610	3.06490	HepG2	CELF1
TRAPPC3	ENSG00000054116.7	438.30160	557.85600	-0.34800	2.97880	2.11530	HepG2	DDX19B
TRAPPC3	ENSG00000054116.7	603.02080	445.62290	0.43630	2.87020	2.18080	HepG2	DDX21
TRAPPC3	ENSG00000054116.7	1407.54330	896.65980	0.65040	6.56210	5.64090	HepG2	DDX3X
TRAPPC3	ENSG00000054116.7	714.61240	535.34370	0.41660	2.14830	1.46610	HepG2	FIP1L1
TRAPPC3	ENSG00000054116.7	622.13140	487.91420	0.35050	1.96810	1.37250	HepG2	HNRNPC
TRAPPC3	ENSG00000054116.7	588.80570	775.16990	-0.39670	2.35190	1.70570	HepG2	HNRNPK
TRAPPC3	ENSG00000054116.7	510.84210	634.40510	-0.31250	2.03140	1.40480	HepG2	IGF2BP1
TRAPPC3	ENSG00000054116.7	200.93180	315.61090	-0.65140	3.45040	2.61400	HepG2	NSUN2
TRAPPC3	ENSG00000054116.7	855.49730	679.29980	0.33260	2.95210	2.32800	HepG2	PCBP1
TRAPPC3	ENSG00000054116.7	299.15310	434.51390	-0.53850	4.36830	3.42020	HepG2	PRPF4
TRAPPC3	ENSG00000054116.7	636.97100	823.39050	-0.37030	2.94670	2.25390	HepG2	PUM2
TRAPPC3	ENSG00000054116.7	741.60140	614.40760	0.27130	2.17480	1.61280	HepG2	PUS1
TRAPPC3	ENSG00000054116.7	664.85470	443.53520	0.58390	2.65660	1.96540	HepG2	RAVER1
TRAPPC3	ENSG00000054116.7	1417.97080	877.18510	0.69280	12.29820	11.36560	HepG2	RBM22
TRAPPC3	ENSG00000054116.7	541.83430	679.40830	-0.32640	2.15550	1.55530	HepG2	RBM25
TRAPPC3	ENSG00000054116.7	621.56340	769.24370	-0.30750	2.48590	1.96840	HepG2	NELFE
TRAPPC3	ENSG00000054116.7	535.37900	716.39320	-0.42020	4.04810	3.32130	HepG2	RECQL
TRAPPC3	ENSG00000054116.7	534.28180	431.63610	0.30770	2.17570	1.59250	HepG2	SAFB2
TRAPPC3	ENSG00000054116.7	487.15920	352.30610	0.46750	2.39520	1.73690	HepG2	SF3B1
TRAPPC3	ENSG00000054116.7	1360.86630	990.72660	0.45790	7.31200	6.60390	HepG2	SRFBP1
TRAPPC3	ENSG00000054116.7	657.39220	470.96340	0.48100	4.21680	3.62800	HepG2	TIAL1
TRAPPC3	ENSG00000054116.7	623.64480	457.93430	0.44550	2.62060	2.00840	HepG2	U2AF1
TRAPPC3	ENSG00000054116.7	427.88800	320.75440	0.41570	2.17890	1.50460	HepG2	UCHL5
TRAPPC3	ENSG00000054116.7	747.57730	477.90630	0.64540	7.83500	7.03570	HepG2	ZNF622
TRAPPC3	ENSG00000054116.7	1750.84470	1417.90970	0.30420	3.29040	2.32520	K562	DKC1
TRAPPC3	ENSG00000054116.7	1757.81680	1419.12720	0.30870	2.40650	1.61590	K562	FIP1L1
TRAPPC3	ENSG00000054116.7	1457.33160	986.89880	0.56230	9.17840	8.14960	K562	FXR1
TRAPPC3	ENSG00000054116.7	2663.56270	2172.03810	0.29420	2.82470	2.06180	K562	GRSF1
TRAPPC3	ENSG00000054116.7	1767.92330	1167.26900	0.59880	5.84080	4.42120	K562	HNRNPM
TRAPPC3	ENSG00000054116.7	2034.14350	1611.01410	0.33640	2.72760	1.91310	K562	PPIG
TRAPPC3	ENSG00000054116.7	1288.28810	1014.76820	0.34420	2.52910	1.81200	K562	PRPF8
TRAPPC3	ENSG00000054116.7	1490.34050	1194.03730	0.31970	2.91580	2.23680	K562	PTBP1
TRAPPC3	ENSG00000054116.7	3090.41830	2541.95610	0.28180	2.52550	1.74630	K562	PUF60
TRAPPC3	ENSG00000054116.7	1577.28310	1170.53000	0.43020	4.75200	3.82950	K562	SRSF1
TRAPPC3	ENSG00000054116.7	1106.93220	914.09770	0.27600	2.11700	1.41500	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRAPPC3 is not available on ENCORE database.

5 RBPs can affect the splicing of TRAPPC3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRAPPC3	ENSG00000054116.7	chr1	-	36605718	36605767			36605320	36605420	36614937	36615070	-0.11000	0.00359	0.03542	excluded	K562	AQR
A3SS	TRAPPC3	ENSG00000054116.7	chr1	-	36605320	36605444			36605320	36605420	36605669	36605767	0.07600	0.00008	0.04519	longer	HepG2	KHSRP
A3SS	TRAPPC3	ENSG00000054116.7	chr1	-	36603396	36603624			36603396	36603579	36605320	36605444	0.09200	0.00000	0.00000	longer	K562	AQR
A3SS	TRAPPC3	ENSG00000054116.7	chr1	-	36605320	36605464			36605320	36605420	36605669	36605839	0.25700	0.00000	0.00000	longer	K562	AQR
MXE	TRAPPC3	ENSG00000054116.7	chr1	-	36605320	36605420	36605669	36605767	36603396	36603579	36614937	36615070	0.11800	0.00686	0.08402	1included	K562	SRSF1
MXE	TRAPPC3	ENSG00000054116.7	chr1	-	36603396	36603602	36605320	36605456	36602172	36602923	36605669	36605767	0.07700	0.00000	0.00000	1included	K562	AQR
MXE	TRAPPC3	ENSG00000054116.7	chr1	-	36603396	36603602	36605320	36605444	36602172	36602923	36605669	36605767	0.15500	0.00000	0.00000	1included	K562	AQR
MXE	TRAPPC3	ENSG00000054116.7	chr1	-	36603396	36603602	36605320	36605420	36602172	36602923	36605669	36605767	-0.12800	0.00007	0.00084	2included	K562	AQR
MXE	TRAPPC3	ENSG00000054116.7	chr1	-	36603396	36603579	36605669	36605767	36602654	36602923	36614692	36615098	0.20700	0.00000	0.00000	1included	K562	EFTUD2
MXE	TRAPPC3	ENSG00000054116.7	chr1	-	36603396	36603579	36605669	36605767	36602172	36602923	36614937	36615070	0.17200	0.00005	0.01400	1included	K562	EWSR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRAPPC3

General Information

Functions

Localization

Domains (AlphaFold: TRAPPC3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRAPPC3 is not avaliable on ENCORE database.

21 proteins are bound to TRAPPC3 RNA:

eCLIP assay for TRAPPC3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRAPPC3 is not available on ENCORE database.

39 RBPs can affect the gene expression of TRAPPC3 :

The Knockdown/knockout RNA-Seq assay for TRAPPC3 is not available on ENCORE database.

5 RBPs can affect the splicing of TRAPPC3 :

The Knockdown/knockout RNA-Seq assay for TRAPPC3 is not avaliable on ENCORE database.