DZIP3

General Information

Gene Name       : DZIP3
Gene ID             : ENSG00000198919.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: DZIP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DZIP3ENSG00000198919.127.386.156.77ENCSR000AEF
HepG2DZIP3ENSG00000198919.126.1110.748.43ENCSR985KAT
K562DZIP3ENSG00000198919.123.983.823.90ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
DZIP3Ribo-STAMP-293TshRNADZIP3-BGRSLV02-55,DZIP3-BGRSLV02-56NT-BGRSLV02-1,NT-BGRSLV02-2,SubmittedENCORE2
DZIP3Ribo-STAMP-293TshRNABGRSDLV04-13,BGRSDLV04-14BGRSDLV04-1,BGRSDLV04-2SubmittedENCORE2
DZIP3Ribo-STAMP-293TshRNADZIP3-BGRSDLV04-15dox,DZIP3-BGRSDLV04-16doxNT-BGRSDLV04-3dox,NT-BGRSDLV04-4dox,SubmittedENCORE2
DZIP3293TshRNADZIP3-BG293LV05-17,DZIP3-BG293LV05-18NT-BG293LV05-1,NT-BG293LV05-2,SubmittingENCORE2
DZIP3293TshRNABG293LV05-19,BG293LV05-20BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
DZIP3293TshRNADZIP3-BG293LV06-59,DZIP3-BG293LV06-60NT-BG293LV06-1,NT-BG293LV06-2,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for DZIP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • DZIP3 RNA is bound by 3 proteins.  







eCLIP assay for DZIP3 is not avaliable on ENCORE database.





3 proteins are bound to DZIP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3108363293108363401+3'-UTR,CDS4.009304.21087HepG2GRWD1
chr3108373130108373157+3'-UTR,CDS3.567343.68471HepG2BCLAF1
chr3108380723108380744+3'-UTR,CDS,intron-Proximal4.130113.02457HepG2BCLAF1
chr3108373079108373153+3'-UTR,CDS3.080313.39306HepG2GRWD1
chr3108366789108366955+3'-UTR,CDS,intron-Proximal3.346075.73981HepG2GRWD1
chr3108330156108330179+3'-UTR,CDS,intron-Proximal3.904324.51739HepG2BCLAF1
chr3108366794108366876+3'-UTR,CDS4.7328810.64218HepG2BCLAF1
chr3108363095108363141+3'-UTR,CDS3.526883.87469HepG2BCLAF1
chr3108356349108356396+5'-UTR,CDS,intron-Proximal4.526883.71570HepG2BCLAF1
chr3108324240108324282+5'-UTR,CDS,intron-Distal3.469145.76104HepG2BCLAF1
chr3108326935108326985+5'-UTR,CDS,intron-Proximal3.149385.00751HepG2BCLAF1
chr3108343330108343367+CDS4.337623.89826HepG2BCLAF1
chr3108351823108351912+CDS5.381368.40988HepG2BCLAF1
chr3108335387108335440+CDS,intron-Proximal4.131614.51739HepG2BCLAF1
chr3108353919108354022+intron-Distal4.264593.41738HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DZIP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for DZIP3 is not available on ENCORE database.

  • 98 RBPs can affect the levels of DZIP3.  








The Knockdown/knockout RNA-Seq assay for DZIP3 is not available on ENCORE database.





98 RBPs can affect the gene expression of DZIP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DZIP3ENSG00000198919.81223.04140884.546600.467403.808202.71220HepG2ABCF1
DZIP3ENSG00000198919.81472.69170870.830300.757907.471306.64120HepG2AKAP1
DZIP3ENSG00000198919.8517.92660785.76530-0.601403.290202.26970HepG2BCCIP
DZIP3ENSG00000198919.8490.40130682.84640-0.477602.448701.60430HepG2BCLAF1
DZIP3ENSG00000198919.8491.09800942.16360-0.9400012.7248011.56600HepG2BOP1
DZIP3ENSG00000198919.81095.00880515.835801.085906.296005.14320HepG2CNOT7
DZIP3ENSG00000198919.8627.10810774.22520-0.304002.378501.43850HepG2YBX3
DZIP3ENSG00000198919.8902.486501091.00920-0.273703.132902.35120HepG2DAZAP1
DZIP3ENSG00000198919.81029.38200723.288100.509004.750903.88850HepG2DDX21
DZIP3ENSG00000198919.8943.84680758.263700.315802.941502.24470HepG2DKC1
DZIP3ENSG00000198919.81291.91100761.372700.762705.815004.88940HepG2EIF4A3
DZIP3ENSG00000198919.81116.99950766.483300.543204.787303.39180HepG2ESF1
DZIP3ENSG00000198919.8499.86090774.49960-0.631706.603705.31540HepG2EWSR1
DZIP3ENSG00000198919.8591.86810422.985100.484603.572802.68560HepG2FUBP3
DZIP3ENSG00000198919.8999.84540712.554400.488603.559602.80870HepG2G3BP1
DZIP3ENSG00000198919.8280.90470425.82230-0.600203.302401.77300HepG2HNRNPAB
DZIP3ENSG00000198919.81275.42290853.698600.579106.268305.25740HepG2HNRNPC
DZIP3ENSG00000198919.8671.48200867.69330-0.369803.758902.93370HepG2HNRNPF
DZIP3ENSG00000198919.81214.70230935.730200.376302.702702.07920HepG2HNRNPLL
DZIP3ENSG00000198919.81217.05560848.053300.521108.436207.41950HepG2HNRNPU
DZIP3ENSG00000198919.81067.90840768.317900.474903.496602.75790HepG2MAGOH
DZIP3ENSG00000198919.81119.81730772.641300.535303.999403.25310HepG2MATR3
DZIP3ENSG00000198919.8892.255201081.83530-0.278002.415501.70530HepG2NOL12
DZIP3ENSG00000198919.81018.06010684.765100.572008.582407.72940HepG2PTBP1
DZIP3ENSG00000198919.8877.463401096.18040-0.321104.263103.56070HepG2PUM1
DZIP3ENSG00000198919.81481.348001095.406800.435304.782803.91240HepG2PUM2
DZIP3ENSG00000198919.81118.53790807.266300.470407.083006.17440HepG2PUS1
DZIP3ENSG00000198919.81325.34910741.566700.8376014.2799013.01690HepG2QKI
DZIP3ENSG00000198919.8879.314101151.69820-0.389304.081203.48360HepG2RBM22
DZIP3ENSG00000198919.81431.29810762.058000.9093022.0373020.79530HepG2NELFE
DZIP3ENSG00000198919.8953.65410709.789300.426004.883804.09550HepG2RECQL
DZIP3ENSG00000198919.8705.22500934.73770-0.406503.188702.46290HepG2RPLP0
DZIP3ENSG00000198919.8743.58710517.839100.521902.964902.13800HepG2RPS3A
DZIP3ENSG00000198919.8401.59230589.75160-0.554402.937502.13000HepG2RRP9
DZIP3ENSG00000198919.8428.31500580.93400-0.439702.466501.57710HepG2SERBP1
DZIP3ENSG00000198919.8614.08040961.17640-0.646404.698103.80590HepG2SF3A3
DZIP3ENSG00000198919.8743.45330926.19900-0.317101.992201.38830HepG2SF3B1
DZIP3ENSG00000198919.8867.34190712.886100.282802.361301.80960HepG2SF3B4
DZIP3ENSG00000198919.8844.52760990.07930-0.229402.221301.58150HepG2SLBP
DZIP3ENSG00000198919.8883.361401300.79970-0.558309.630108.85030HepG2SRFBP1
DZIP3ENSG00000198919.81472.83280744.116200.9849027.3717026.22190HepG2SRSF1
DZIP3ENSG00000198919.8838.838201019.55820-0.281502.791402.16270HepG2SRSF5
DZIP3ENSG00000198919.8600.80480852.48450-0.504806.256105.27650HepG2SRSF7
DZIP3ENSG00000198919.8879.51430605.393200.538707.699506.86300HepG2SRSF9
DZIP3ENSG00000198919.81456.828101129.400300.367205.194004.53480HepG2SSB
DZIP3ENSG00000198919.8309.83580450.41580-0.539802.874601.75010HepG2STIP1
DZIP3ENSG00000198919.8947.04260668.889000.501604.126503.46320HepG2TAF15
DZIP3ENSG00000198919.8588.51430911.99660-0.632006.200205.17610HepG2TARDBP
DZIP3ENSG00000198919.8473.50850831.41220-0.8122014.3988013.25420HepG2TRIM56
DZIP3ENSG00000198919.8306.33160454.37780-0.568803.269102.44580HepG2UCHL5
DZIP3ENSG00000198919.8430.97240822.97520-0.9333016.9225015.62790HepG2UTP3
DZIP3ENSG00000198919.81088.70890800.783000.443002.376701.39530HepG2XRCC6
DZIP3ENSG00000198919.8602.64390937.49530-0.6375011.6737010.74180HepG2ZNF622
DZIP3ENSG00000198919.8441.23970676.04170-0.615504.326602.77430K562ABCF1
DZIP3ENSG00000198919.8395.76300692.15180-0.806508.015907.12060K562AGGF1
DZIP3ENSG00000198919.8522.17060760.47410-0.542405.032703.61090K562AKAP8
DZIP3ENSG00000198919.8430.93920720.19170-0.740907.433306.31830K562AKAP8L
DZIP3ENSG00000198919.81152.74040804.819200.518205.299103.50560K562APOBEC3C
DZIP3ENSG00000198919.8260.10400797.96080-1.6172025.3916023.80670K562AQR
DZIP3ENSG00000198919.8537.03480755.60980-0.492603.788302.70640K562ATP5C1
DZIP3ENSG00000198919.8243.67070360.62540-0.565603.634102.08330K562BCCIP
DZIP3ENSG00000198919.8284.88550470.85370-0.724905.117303.11040K562BUD13
DZIP3ENSG00000198919.8643.79680827.23610-0.361702.643901.50260K562CCDC124
DZIP3ENSG00000198919.8359.80380569.52430-0.662503.426101.79660K562CKAP4
DZIP3ENSG00000198919.8455.14840668.46610-0.554505.699704.06290K562CPEB4
DZIP3ENSG00000198919.8303.03330433.57160-0.516803.345002.48090K562CPSF6
DZIP3ENSG00000198919.8664.891701121.30320-0.7540010.645108.80040K562CELF1
DZIP3ENSG00000198919.8186.13010277.82390-0.577903.298702.15070K562DDX3X
DZIP3ENSG00000198919.8566.45510691.71770-0.288202.230901.63580K562DDX47
DZIP3ENSG00000198919.8502.27160775.12600-0.626004.340403.21030K562DKC1
DZIP3ENSG00000198919.8162.11860290.64860-0.842205.147103.88140K562EFTUD2
DZIP3ENSG00000198919.8123.95010261.37090-1.076309.229307.00260K562EIF4B
DZIP3ENSG00000198919.8161.98310253.34760-0.645303.406701.94220K562EWSR1
DZIP3ENSG00000198919.8260.57340485.90310-0.899005.216904.02720K562FIP1L1
DZIP3ENSG00000198919.8297.66780438.57180-0.559103.951802.21490K562G3BP1
DZIP3ENSG00000198919.8378.14910656.89490-0.796703.989303.08470K562GRSF1
DZIP3ENSG00000198919.8344.43560628.26090-0.867104.208002.60700K562HNRNPA2B1
DZIP3ENSG00000198919.8675.61240298.633101.1777016.4951015.11670K562HNRNPC
DZIP3ENSG00000198919.8488.98700625.11930-0.354302.293001.34190K562HNRNPL
DZIP3ENSG00000198919.8268.92880399.63020-0.571403.116502.12430K562HNRNPM
DZIP3ENSG00000198919.8612.88900418.082900.551705.312204.06110K562HNRNPU
DZIP3ENSG00000198919.8502.10700658.82650-0.391902.261501.53810K562HSPD1
DZIP3ENSG00000198919.8269.50470458.60780-0.767005.084003.52240K562IGF2BP2
DZIP3ENSG00000198919.8573.41200764.38620-0.414703.190002.29890K562KIF1C
DZIP3ENSG00000198919.8490.71870731.63850-0.576204.051602.67360K562MAK16
DZIP3ENSG00000198919.8584.67230856.29410-0.550504.914303.63380K562MBNL1
DZIP3ENSG00000198919.8329.83690600.19280-0.863706.421304.86450K562NAA15
DZIP3ENSG00000198919.8296.74760549.59530-0.889104.098802.83370K562PABPN1
DZIP3ENSG00000198919.8282.76930428.98510-0.601304.126102.92470K562PCBP2
DZIP3ENSG00000198919.8672.45590344.148000.966309.578808.03940K562PCBP3
DZIP3ENSG00000198919.8531.22610263.988801.0087010.320808.81720K562POLR2G
DZIP3ENSG00000198919.8301.23120551.54990-0.872608.213306.62360K562PPIG
DZIP3ENSG00000198919.8382.85630653.45190-0.771303.213001.59490K562PPP1R8
DZIP3ENSG00000198919.8193.07020282.83430-0.550802.381301.68420K562PRPF8
DZIP3ENSG00000198919.8289.68810714.40160-1.3022014.4277013.22770K562PUS1
DZIP3ENSG00000198919.8359.89400695.93660-0.951405.924305.08390K562RBM15
DZIP3ENSG00000198919.8205.59100449.20540-1.1276012.4592010.48030K562RBM22
DZIP3ENSG00000198919.8168.42430310.02630-0.880305.383503.44160K562RBM25
DZIP3ENSG00000198919.8395.65550676.15720-0.773103.098101.44290K562RBM39
DZIP3ENSG00000198919.8346.05200244.321200.502102.819301.81840K562RCC2
DZIP3ENSG00000198919.8653.34130472.699800.466802.870301.75460K562NELFE
DZIP3ENSG00000198919.8342.49340464.99620-0.441102.146201.42030K562SF3A3
DZIP3ENSG00000198919.8262.43160393.67220-0.585103.062702.03870K562SF3B1
DZIP3ENSG00000198919.8160.14460339.82300-1.085407.479206.02770K562SF3B4
DZIP3ENSG00000198919.8233.83000577.21660-1.303707.310504.97270K562SNRNP200
DZIP3ENSG00000198919.8360.38360583.18240-0.694404.282702.66210K562STAU1
DZIP3ENSG00000198919.8354.39050464.73800-0.391102.096301.47440K562TARDBP
DZIP3ENSG00000198919.8435.50570327.112800.412802.686901.89450K562U2AF2
DZIP3ENSG00000198919.8667.30740499.573400.417603.328902.54510K562UPF1
DZIP3ENSG00000198919.8392.07810724.15770-0.885205.066903.13260K562UTP18
DZIP3ENSG00000198919.8349.13110563.10950-0.689604.865503.26930K562UTP3
DZIP3ENSG00000198919.8680.11210945.59280-0.475404.374002.74220K562WRN
DZIP3ENSG00000198919.8574.49610898.85240-0.645806.970805.50180K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DZIP3 is not available on ENCORE database.





10 RBPs can affect the splicing of DZIP3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEDZIP3ENSG00000198919.8chr3+108365463108365496108363010108363628108366789108367809-0.260000.012390.09620excludedK562AQR
SEDZIP3ENSG00000198919.8chr3+1083630101083636281083612841083613611083654631083654960.431000.000060.01722includedK562DROSHA
SEDZIP3ENSG00000198919.8chr3+1083630101083636281083612841083613611083654631083654960.347000.000770.08768includedK562LARP4
SEDZIP3ENSG00000198919.8chr3+108365463108365496108363010108363628108366789108367809-0.331000.001140.07016excludedK562HNRNPL
RIDZIP3ENSG00000198919.8chr3+1083667891083678091083667891083669591083677641083678090.262000.000850.03269includedHepG2TIA1
RIDZIP3ENSG00000198919.8chr3+1083667891083678091083667891083669591083677641083678090.225000.002930.06014includedHepG2FTO
RIDZIP3ENSG00000198919.8chr3+1083667891083678091083667891083669591083677641083678090.244000.000070.00138includedHepG2QKI
RIDZIP3ENSG00000198919.8chr3+1083667891083678091083667891083669591083677641083678090.243000.000080.00144includedHepG2TAF15
RIDZIP3ENSG00000198919.8chr3+1083667891083678091083667891083669591083677641083678090.189000.001680.01427includedHepG2SF3B4
MXEDZIP3ENSG00000198919.8chr3+108363010108363628108365463108365496108361284108361361108366789108367809-0.357000.003060.067142includedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for DZIP3 is not avaliable on ENCORE database.