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DZIP3
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-59
BG293LV06-60
idx
0
0
TRCN#_or_BGC#
TRCN0000034247
TRCN0000034247
shRNA_or_gRNA_sequence
CCGGCGATTTGTAGTTACCTAGATTCTCGAGAATCTAGGTAACTACAAATCGTTTTTG
CCGGCGATTTGTAGTTACCTAGATTCTCGAGAATCTAGGTAACTACAAATCGTTTTTG
PAM
Name
DZIP3
DZIP3
Sample_ID
BG293LV06-59
BG293LV06-60
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
DZIP3
DZIP3
qPCR_result
58.6
53.0
Ave_qPCR
55.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10146
10147
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-59
BG293LV06-60
Sample_ID
BG293LV06-59
BG293LV06-60
Sample Name
Sample Name
DZIP3-BG293LV06-59
DZIP3-BG293LV06-60
RBP
DZIP3
DZIP3
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13496
13497
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-59
BG293LV06-60
Sample #
61
62
Sample Name
DZIP3-BG293LV06-59
DZIP3-BG293LV06-60
Sample_Name_Alias
Index Well Position
E08
F08
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
282
277
Peak_Molarity
90.20
87.90
libSampleQC_DNA_Well
DNA_Library_set71/set1/E8.png
DNA_Library_set71/set1/F8.png
RIN
10.0
10.0
libSample_RNA_Well
RNA_Library_set71/set1/E8.png
RNA_Library_set71/set1/F8.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-59
BG293LV06-60
RBP
DZIP3
DZIP3
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4486
4487
Sequencing Information
BG293LV06-59
BG293LV06-60
Sample_ID
BG293LV06-59
BG293LV06-60
Sample Name
DZIP3-BG293LV06-59
DZIP3-BG293LV06-60
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
38,073,953
42,200,153
total_aligned_reads
35,255,045
38,958,213
unique_aligned_reads
32,998,487
36,437,358
percent_uniqueAligned
0.86669
0.86344
correlation_replicates
0.992183
0.992183
spikein_reads
55,534
59,190
percent_spikeins
0.00146
0.00140
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3055
3056
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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