DZIP3      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-59BG293LV06-60
idx00
TRCN#_or_BGC#TRCN0000034247TRCN0000034247
shRNA_or_gRNA_sequenceCCGGCGATTTGTAGTTACCTAGATTCTCGAGAATCTAGGTAACTACAAATCGTTTTTGCCGGCGATTTGTAGTTACCTAGATTCTCGAGAATCTAGGTAACTACAAATCGTTTTTG
PAM
NameDZIP3DZIP3
Sample_IDBG293LV06-59BG293LV06-60
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameDZIP3DZIP3
qPCR_result58.653.0
Ave_qPCR55.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1014610147




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-59BG293LV06-60
Sample_IDBG293LV06-59BG293LV06-60
Sample Name
Sample NameDZIP3-BG293LV06-59DZIP3-BG293LV06-60
RBPDZIP3DZIP3
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1349613497




Library-Prep Information
BG293LV06-59BG293LV06-60
Sample #6162
Sample NameDZIP3-BG293LV06-59DZIP3-BG293LV06-60
Sample_Name_Alias
Index Well PositionE08F08
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp282277
Peak_Molarity90.2087.90
libSampleQC_DNA_WellDNA_Library_set71/set1/E8.pngDNA_Library_set71/set1/F8.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/E8.pngRNA_Library_set71/set1/F8.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-59BG293LV06-60
RBPDZIP3DZIP3
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44864487




Sequencing Information
BG293LV06-59BG293LV06-60
Sample_IDBG293LV06-59BG293LV06-60
Sample NameDZIP3-BG293LV06-59DZIP3-BG293LV06-60
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads38,073,95342,200,153
total_aligned_reads35,255,04538,958,213
unique_aligned_reads32,998,48736,437,358
percent_uniqueAligned0.866690.86344
correlation_replicates0.9921830.992183
spikein_reads55,53459,190
percent_spikeins0.001460.00140
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30553056




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database