HIGD2A

General Information

Gene Name       : HIGD2A
Gene ID             : ENSG00000146066.2
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HIGD2A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HIGD2AENSG00000146066.238.78103.4071.09ENCSR000AEF
HepG2HIGD2AENSG00000146066.2120.6167.0693.84ENCSR985KAT
K562HIGD2AENSG00000146066.2179.8696.77138.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HIGD2A is not avaliable on ENCORE database.



Proteins bound to RNA
  • HIGD2A RNA is bound by 14 proteins.  







eCLIP assay for HIGD2A is not avaliable on ENCORE database.





14 proteins are bound to HIGD2A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5175816476175816528+3'-UTR,CDS,intron-Distal5.108227.56355HepG2LARP4
chr5175816598175816641+3'-UTR,intron-Distal5.2040546.29353K562PABPC4
chr5175816612175816702+3'-UTR,intron-Distal7.1457730.40154HepG2SUB1
chr5175816596175816641+3'-UTR,intron-Distal4.647834.50986K562IGF2BP1
chr5175816588175816684+3'-UTR,intron-Distal3.598945.80574K562DDX6
chr5175816649175816687+3'-UTR,intron-Distal5.0504713.04183K562PABPC4
chr5175816620175816696+3'-UTR,intron-Distal3.458297.10953K562NOLC1
chr5175816598175816630+3'-UTR,intron-Distal3.659024.43068K562SND1
chr5175816589175816650+3'-UTR,intron-Distal4.0932310.22307K562DDX55
chr5175816531175816580+3'-UTR,intron-Distal3.116746.74417HepG2LARP4
chr5175816516175816522+3'-UTR,intron-Distal3.348287.02805K562YBX3
chr5175816580175816641+3'-UTR,intron-Distal3.7771812.03850HepG2LARP4
chr5175815784175815865+5'-UTR,CDS,intron-Distal3.6805829.25599K562DDX3X
chr5175815757175815795+5'-UTR,intron-Distal3.878973.02572K562SND1
chr5175815780175815890+5'-UTR,CDS,intron-Distal3.681835.90734HepG2DDX3X
chr5175815789175815849+5'-UTR,CDS,intron-Distal3.0096919.66833K562YBX3
chr5175815753175815796+5'-UTR,intron-Distal3.524963.89838K562PABPC4
chr5175815759175815848+5'-UTR,CDS,intron-Distal4.154028.35382K562RPS3
chr5175815793175815861+5'-UTR,CDS,intron-Distal3.684777.98520HepG2LARP4
chr5175815924175815969+CDS,intron-Distal4.963535.94584K562PABPC4
chr5175816347175816353+CDS,intron-Distal3.127226.38612K562YBX3
chr5175816372175816395+CDS,intron-Distal4.3926453.07127K562YBX3
chr5175816395175816399+CDS,intron-Distal4.1479143.57269K562YBX3
chr5175816353175816366+CDS,intron-Distal4.9829024.37164K562YBX3
chr5175816352175816423+CDS,intron-Distal4.153867.88838K562IGF2BP2
chr5175816367175816372+CDS,intron-Distal4.7711839.66270K562YBX3
chr5175816399175816428+CDS,intron-Distal3.6218122.37164K562YBX3
chr5175816299175816366+CDS,intron-Distal,intron-Proximal4.942344.86944K562AQR
chr5175815857175815918+CDS,intron-Distal4.407695.01572HepG2SUB1
chr5175815875175815910+CDS,intron-Distal3.1617817.70137K562YBX3
chr5175816130175816226+intron-Distal4.156964.57620HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HIGD2A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HIGD2A is not available on ENCORE database.

  • 98 RBPs can affect the levels of HIGD2A.  








The Knockdown/knockout RNA-Seq assay for HIGD2A is not available on ENCORE database.





98 RBPs can affect the gene expression of HIGD2A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HIGD2AENSG00000146066.2645.43310790.94290-0.293302.631402.03540HepG2ACO1
HIGD2AENSG00000146066.2393.272001137.07100-1.531709.626508.21940HepG2ASCC1
HIGD2AENSG00000146066.2828.97940571.151000.537402.721401.79270HepG2BCCIP
HIGD2AENSG00000146066.2458.40540275.879700.732505.712904.89100HepG2BOP1
HIGD2AENSG00000146066.2418.70320253.272600.725103.152402.42350HepG2CPSF6
HIGD2AENSG00000146066.21214.27620910.141500.415806.133705.09120HepG2DAZAP1
HIGD2AENSG00000146066.2588.69300437.769800.427203.303402.04140HepG2DDX1
HIGD2AENSG00000146066.2466.24410600.83440-0.365902.168501.55990HepG2DDX21
HIGD2AENSG00000146066.2822.338101131.26550-0.460101.896801.37600HepG2DDX6
HIGD2AENSG00000146066.2561.65490756.72110-0.430104.239703.43670HepG2DKC1
HIGD2AENSG00000146066.2598.61620429.260000.479702.062401.44540HepG2DNAJC21
HIGD2AENSG00000146066.2541.02810425.461200.346602.871102.20890HepG2DNAJC2
HIGD2AENSG00000146066.2743.759301169.82800-0.653402.794802.10260HepG2EIF4B
HIGD2AENSG00000146066.2563.52720897.85510-0.6720010.112608.70730HepG2EIF4G1
HIGD2AENSG00000146066.2430.96010860.09770-0.9969013.4180011.71530HepG2EIF4G2
HIGD2AENSG00000146066.2924.190901316.98230-0.511008.360707.41290HepG2ETF1
HIGD2AENSG00000146066.2735.06180938.85200-0.353002.647101.87890HepG2FUBP3
HIGD2AENSG00000146066.2620.34180755.13130-0.283702.395301.47950HepG2HDGF
HIGD2AENSG00000146066.2618.42530482.043800.359302.065501.45590HepG2HNRNPC
HIGD2AENSG00000146066.2786.98360629.457400.322101.995901.38000HepG2HNRNPF
HIGD2AENSG00000146066.21187.79880829.088800.518609.015307.86510HepG2HNRNPL
HIGD2AENSG00000146066.2432.18750273.989000.657404.182603.42430HepG2HNRNPLL
HIGD2AENSG00000146066.2635.98350478.857100.409303.872503.16580HepG2HNRNPU
HIGD2AENSG00000146066.2767.68650619.829200.308501.934901.32110HepG2IGF2BP1
HIGD2AENSG00000146066.2644.48780489.137100.397804.090803.21610HepG2ILF2
HIGD2AENSG00000146066.2727.094201212.95050-0.738303.770103.00430HepG2MAGOH
HIGD2AENSG00000146066.2662.552301219.61640-0.880304.318603.54710HepG2MATR3
HIGD2AENSG00000146066.2811.644901111.18510-0.453202.002201.37970HepG2PABPC4
HIGD2AENSG00000146066.2661.720901103.14060-0.737304.359203.62690HepG2PCBP1
HIGD2AENSG00000146066.2714.541601122.61870-0.651803.456402.85950HepG2PTBP1
HIGD2AENSG00000146066.21135.46640914.487500.312103.622002.96200HepG2PUM1
HIGD2AENSG00000146066.2801.292601215.54270-0.601203.171102.50950HepG2QKI
HIGD2AENSG00000146066.2995.31050651.524700.611204.942303.59820HepG2RBM27
HIGD2AENSG00000146066.2826.36780529.069000.643204.283602.96240HepG2RCC2
HIGD2AENSG00000146066.2534.470501249.25730-1.224908.515807.66250HepG2NELFE
HIGD2AENSG00000146066.2772.832801163.71210-0.590502.823302.20090HepG2RECQL
HIGD2AENSG00000146066.2647.83540426.445000.603207.528406.54190HepG2SAFB2
HIGD2AENSG00000146066.21008.11160825.990500.287402.870702.15690HepG2SLBP
HIGD2AENSG00000146066.2940.545701243.24010-0.402505.506304.86600HepG2SRFBP1
HIGD2AENSG00000146066.2748.106201219.81440-0.705304.041203.49650HepG2SRSF1
HIGD2AENSG00000146066.2773.17760618.444400.322102.484801.82140HepG2SRSF7
HIGD2AENSG00000146066.2697.18270992.46710-0.509502.482501.95330HepG2SRSF9
HIGD2AENSG00000146066.2331.71080530.14520-0.676503.456002.10150HepG2SUB1
HIGD2AENSG00000146066.2479.370001096.68460-1.193908.127807.24840HepG2TAF15
HIGD2AENSG00000146066.2566.42310374.629200.596302.913601.89210HepG2TFIP11
HIGD2AENSG00000146066.2651.75340469.457900.473203.543202.92240HepG2TRIM56
HIGD2AENSG00000146066.2389.13650624.06970-0.681404.432703.64660HepG2U2AF1
HIGD2AENSG00000146066.2584.81210330.164100.824706.847005.63970HepG2UCHL5
HIGD2AENSG00000146066.2269.26590617.63400-1.1977022.0269020.42760HepG2UPF1
HIGD2AENSG00000146066.2846.43120627.836200.430902.320101.32390HepG2XPO5
HIGD2AENSG00000146066.21008.78700550.273300.874308.325207.08370HepG2XRN2
HIGD2AENSG00000146066.22213.401001375.110000.6866018.5559017.20690K562AGGF1
HIGD2AENSG00000146066.21279.644901019.006800.328503.670401.91010K562AKAP1
HIGD2AENSG00000146066.21929.644201511.101600.352603.383302.27290K562AKAP8
HIGD2AENSG00000146066.22365.557401430.880000.7252011.7411010.26930K562AKAP8L
HIGD2AENSG00000146066.21232.29940975.371400.337203.861802.71560K562BCLAF1
HIGD2AENSG00000146066.2571.56470427.954700.417402.379101.57630K562BOP1
HIGD2AENSG00000146066.2678.06800455.015600.575405.365704.28250K562CPSF6
HIGD2AENSG00000146066.2953.43040739.964600.365603.386202.19840K562CSTF2
HIGD2AENSG00000146066.2910.947801199.74210-0.397304.839204.01200K562DDX47
HIGD2AENSG00000146066.21052.79330763.983000.462503.555102.51230K562EFTUD2
HIGD2AENSG00000146066.2342.68630740.66820-1.111904.335703.05060K562EIF3A
HIGD2AENSG00000146066.21245.80430941.681800.403704.738002.96630K562EWSR1
HIGD2AENSG00000146066.21003.87470610.433700.717604.321303.24620K562FIP1L1
HIGD2AENSG00000146066.2831.803801121.89380-0.431605.000504.22180K562FXR1
HIGD2AENSG00000146066.2956.07730692.529100.465203.475901.83330K562G3BP1
HIGD2AENSG00000146066.2210.73730541.79970-1.362307.786006.47230K562G3BP2
HIGD2AENSG00000146066.2614.76660434.409500.500903.689102.77760K562GPKOW
HIGD2AENSG00000146066.22084.644101583.323900.396704.125403.20600K562GRSF1
HIGD2AENSG00000146066.21542.98840745.458401.049406.453004.32800K562HNRNPA2B1
HIGD2AENSG00000146066.21326.443101084.198800.290802.245801.30330K562HNRNPL
HIGD2AENSG00000146066.21220.96120827.470100.561102.413801.66680K562HSPD1
HIGD2AENSG00000146066.21335.82600724.877000.881802.916001.85430K562IGF2BP2
HIGD2AENSG00000146066.21101.15270737.065900.579006.061604.19560K562IGF2BP3
HIGD2AENSG00000146066.21994.355801518.466500.393203.937102.93060K562KIF1C
HIGD2AENSG00000146066.2979.17060759.611400.366202.185901.37550K562MATR3
HIGD2AENSG00000146066.2618.52540424.039900.544504.177003.08770K562METAP2
HIGD2AENSG00000146066.21066.19050753.029300.501603.841202.25600K562NONO
HIGD2AENSG00000146066.21340.087601096.091500.289903.921403.05190K562NSUN2
HIGD2AENSG00000146066.21673.59920651.947301.3600010.367708.01940K562PABPN1
HIGD2AENSG00000146066.2690.549001506.88800-1.1258012.6208010.85610K562PCBP3
HIGD2AENSG00000146066.21002.89360723.913100.470203.358901.35080K562PES1
HIGD2AENSG00000146066.2527.803401155.76960-1.1308013.5796011.87430K562POLR2G
HIGD2AENSG00000146066.21220.64850693.115500.816403.773602.79390K562PPIG
HIGD2AENSG00000146066.21696.31830774.977101.130106.706704.06900K562PPP1R8
HIGD2AENSG00000146066.21075.91900743.446100.533204.566503.60300K562PRPF8
HIGD2AENSG00000146066.22336.658501418.928600.7195010.804709.77940K562PUS1
HIGD2AENSG00000146066.22021.443101382.624700.547904.888704.12140K562RBM15
HIGD2AENSG00000146066.2709.10570513.352500.466003.711202.13940K562RBM25
HIGD2AENSG00000146066.2492.14860746.08880-0.600303.555202.29430K562NELFE
HIGD2AENSG00000146066.2630.94470857.07130-0.441902.878001.85480K562RPS3
HIGD2AENSG00000146066.21103.89550596.154600.888703.976902.45900K562SF1
HIGD2AENSG00000146066.21485.60510726.679801.031605.627603.46110K562SFPQ
HIGD2AENSG00000146066.2355.67600526.85970-0.566904.560402.38970K562SND1
HIGD2AENSG00000146066.21282.13990684.752600.904804.275302.63970K562SNRNP200
HIGD2AENSG00000146066.21075.14930685.015200.650205.996204.34950K562SRSF5
HIGD2AENSG00000146066.2958.31690719.680100.413002.585101.60610K562SUPV3L1
HIGD2AENSG00000146066.2926.337001159.35660-0.323702.422701.65490K562SYNCRIP
HIGD2AENSG00000146066.21264.98630733.766800.785608.672507.32840K562TARDBP
HIGD2AENSG00000146066.21094.00140707.837400.628007.299805.86780K562TIA1
HIGD2AENSG00000146066.21135.84620694.927800.708707.116605.16330K562TRA2A
HIGD2AENSG00000146066.21006.02070761.761000.401102.767701.74940K562UCHL5
HIGD2AENSG00000146066.21212.21040994.464900.285502.176101.40090K562WDR3
HIGD2AENSG00000146066.21035.16540775.793300.416002.961601.69700K562XRN2
HIGD2AENSG00000146066.22333.404301853.367900.332203.031002.12340K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HIGD2A is not available on ENCORE database.






No RBPs affect the alternative splcing events of HIGD2A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HIGD2A is not avaliable on ENCORE database.