PTK2B

General Information

Gene Name : PTK2B
Gene ID : ENSG00000120899.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTK2B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTK2B	ENSG00000120899.17	50.44	95.73	73.09	ENCSR000AEF
HepG2	PTK2B	ENSG00000120899.17	1.80	1.28	1.54	ENCSR985KAT
K562	PTK2B	ENSG00000120899.17	25.71	21.58	23.64	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTK2B is not avaliable on ENCORE database.

Proteins bound to RNA

PTK2B RNA is bound by 19 proteins.

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eCLIP assay for PTK2B is not avaliable on ENCORE database.

19 proteins are bound to PTK2B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	27316748	27316863	+	3'-UTR	4.62661	74.77521	K562	PTBP1
chr8	27316469	27316534	+	3'-UTR	6.44075	33.67477	K562	PUM2
chr8	27288852	27288975	+	5'-UTR,CDS,intron-Proximal	4.32519	21.76344	K562	DDX24
chr8	27316534	27316590	+	3'-UTR	6.16838	19.47388	K562	PUM2
chr8	27261442	27261536	+	intron-Distal	5.71741	14.79190	K562	PTBP1
chr8	27297682	27297782	+	CDS,intron-Proximal	4.38541	14.68530	K562	AQR
chr8	27295279	27295344	+	CDS,intron-Proximal	4.80389	14.63362	K562	DDX24
chr8	27294947	27295014	+	CDS,intron-Proximal	3.84495	10.52099	K562	DDX24
chr8	27288854	27288937	+	5'-UTR,CDS,intron-Proximal	3.61324	10.34300	K562	SF3B4
chr8	27297957	27298022	+	CDS,intron-Proximal	4.35091	10.30697	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 65 entries

eCLIP assay for PTK2B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTK2B is not available on ENCORE database.
110 RBPs can affect the levels of PTK2B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTK2B is not available on ENCORE database.

110 RBPs can affect the gene expression of PTK2B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTK2B	ENSG00000120899.13	679.38170	130.85120	2.37620	40.09070	38.00620	HepG2	GPKOW
PTK2B	ENSG00000120899.13	657.78470	219.49620	1.58330	35.92030	34.55610	HepG2	SSB
PTK2B	ENSG00000120899.13	398.63320	91.94960	2.11600	32.62100	31.24700	HepG2	TIAL1
PTK2B	ENSG00000120899.13	525.94790	157.65460	1.73810	25.29970	23.66940	HepG2	RPLP0
PTK2B	ENSG00000120899.13	1345.78410	2529.06270	-0.91020	22.53090	20.33110	K562	SYNCRIP
PTK2B	ENSG00000120899.13	315.44780	85.65130	1.88080	19.43500	17.97650	HepG2	HNRNPA1
PTK2B	ENSG00000120899.13	1426.46890	2833.94280	-0.99040	19.87130	17.89170	K562	HSPD1
PTK2B	ENSG00000120899.13	1747.75770	3368.40150	-0.94660	19.12570	17.74820	K562	AQR
PTK2B	ENSG00000120899.13	868.06570	1661.15610	-0.93630	16.74890	14.59660	K562	EIF4A3
PTK2B	ENSG00000120899.13	285.31490	95.27550	1.58230	13.20450	11.79510	HepG2	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 137 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTK2B is not available on ENCORE database.

9 RBPs can affect the splicing of PTK2B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	-0.22400	0.00000	0.00254	excluded	K562	RBFOX2
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	-0.40000	0.00000	0.00000	excluded	K562	TARDBP
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	-0.53800	0.00000	0.00000	excluded	K562	HNRNPK
SE	PTK2B	ENSG00000120899.13	chr8	+	27297753	27297958	27296825	27296915	27300391	27300500	-0.13200	0.00000	0.00002	excluded	K562	HNRNPC
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	-0.23900	0.00001	0.00117	excluded	K562	PRPF8
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	0.08600	0.00010	0.02539	included	K562	LARP4
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	-0.08500	0.00025	0.05008	excluded	K562	MTPAP
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	-0.11900	0.00056	0.05020	excluded	K562	XRCC6
SE	PTK2B	ENSG00000120899.13	chr8	+	27303310	27303436	27301722	27301788	27308265	27308412	-0.06500	0.00323	0.04440	excluded	K562	PUS1
SE	PTK2B	ENSG00000120899.13	chr8	+	27180783	27180943	27179918	27180016	27183080	27183198	0.61300	0.00521	0.07149	included	K562	HNRNPC

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTK2B

General Information

Functions

Localization

Domains (AlphaFold: PTK2B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTK2B is not avaliable on ENCORE database.

19 proteins are bound to PTK2B RNA:

eCLIP assay for PTK2B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTK2B is not available on ENCORE database.

110 RBPs can affect the gene expression of PTK2B :

The Knockdown/knockout RNA-Seq assay for PTK2B is not available on ENCORE database.

9 RBPs can affect the splicing of PTK2B :

The Knockdown/knockout RNA-Seq assay for PTK2B is not avaliable on ENCORE database.