NDUFS6

General Information

Gene Name       : NDUFS6
Gene ID             : ENSG00000145494.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFS6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFS6ENSG00000145494.117.6619.9813.82ENCSR000AEF
HepG2NDUFS6ENSG00000145494.1167.7030.3849.04ENCSR985KAT
K562NDUFS6ENSG00000145494.1182.0849.1865.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
NDUFS6Ribo-STAMP-293TshRNANDUFS6-BGRSLV04-23,NDUFS6-BGRSLV04-24NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFS6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFS6 RNA is bound by 30 proteins.  







eCLIP assay for NDUFS6 is not avaliable on ENCORE database.





30 proteins are bound to NDUFS6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr518159801816078+3'-UTR,CDS3.324315.54628K562ZC3H11A
chr518159751816030+3'-UTR,CDS6.77453400.00000K562PABPC4
chr518160681816135+3'-UTR4.9314718.46349K562LIN28B
chr518161051816158+3'-UTR4.840994.18952HepG2SUB1
chr518160281816065+3'-UTR5.318209.53134K562RPS3
chr518160421816066+3'-UTR3.020123.09884K562LIN28B
chr518160241816081+3'-UTR,CDS3.017263.65187HepG2DDX55
chr518159621816029+3'-UTR,CDS,intron-Proximal5.3373428.50089HepG2LARP4
chr518159631816070+3'-UTR,CDS,intron-Proximal3.6079022.00334K562DDX6
chr518160291816075+3'-UTR5.0426622.84898HepG2LARP4
chr518160751816130+3'-UTR3.350735.39571HepG2LARP4
chr518160301816075+3'-UTR6.63811400.00000K562PABPC4
chr518160931816133+3'-UTR4.7836518.36769K562PABPC4
chr518160311816090+3'-UTR3.322949.85589K562APOBEC3C
chr518160301816081+3'-UTR4.220285.69086K562LARP4
chr518159801816031+3'-UTR,CDS4.4286726.63404K562APOBEC3C
chr518159881816067+3'-UTR,CDS3.568207.92483K562LSM11
chr518144771814512+CDS4.051006.88182HepG2LARP4
chr518144731814562+CDS6.7486734.20420K562LIN28B
chr518015431801604+CDS4.5269718.84251HepG2DDX3X
chr518016041801665+CDS,intron-Proximal4.68091400.00000K562DDX3X
chr518024481802481+CDS3.469633.91115K562LIN28B
chr518159641816024+CDS,intron-Proximal5.509717.88213HepG2DDX55
chr518015481801604+CDS4.3065955.52138K562DDX3X
chr518146551814725+CDS,intron-Distal,intron-Proximal4.458624.58968K562PRPF8
chr518015521801609+CDS3.9052718.87844K562RPS3
chr518159811816009+CDS5.1288036.84297K562PUM2
chr518145421814560+CDS3.290225.00851HepG2LARP4
chr518145661814575+CDS4.673415.48383HepG2LARP4
chr518024341802451+CDS,intron-Proximal3.9081824.31434K562DDX3X
chr518145171814543+CDS3.619479.70567K562PABPC4
chr518145641814576+CDS,intron-Proximal3.0715211.04431K562DDX55
chr518159621816026+CDS,intron-Proximal3.5737429.75910K562DDX55
chr518145711814619+CDS,intron-Proximal3.123634.20978K562AQR
chr518144671814569+CDS3.7029914.81904K562APOBEC3C
chr518016091801664+CDS,intron-Proximal4.287038.12455HepG2DDX3X
chr518016071801656+CDS3.713096.95162HepG2RPS3
chr518159631815980+CDS,intron-Proximal3.601398.16472K562APOBEC3C
chr518016611801716+CDS,intron-Proximal3.701635.34337K562AQR
chr518024351802454+CDS3.668936.07223K562FTO
chr518145121814542+CDS3.345747.21622HepG2LARP4
chr518145431814557+CDS3.721438.83294K562PABPC4
chr518016091801661+CDS3.562596.31549K562RPS3
chr518144781814564+CDS3.7805026.60679K562RPS3
chr518159631815981+CDS,intron-Proximal5.1249646.28348K562PUM2
chr518144881814577+CDS,intron-Proximal5.03648400.00000K562PUM2
chr518015461801608+CDS4.037445.13579K562EIF3G
chr518015331801659+CDS3.7355113.21047K562DROSHA
chr518015461801607+CDS4.7668612.50152HepG2RPS3
chr518144611814561+CDS3.434197.84167HepG2RPS3
chr518015461801656+CDS4.2437813.88777K562GEMIN5
chr518034411803532+intron-Distal5.8350025.11901K562HNRNPM
chr518143371814426+intron-Distal,intron-Proximal3.322234.35650K562KHSRP
chr518035321803640+intron-Distal8.0311171.41220K562HNRNPM
chr518073831807453+intron-Distal4.243267.01333K562EXOSC5
chr518095071809546+intron-Distal3.261093.72904K562EXOSC5
chr518094671809608+intron-Distal3.8181416.60866K562HNRNPM
chr518033961803436+intron-Distal4.5088920.34043K562EXOSC5
chr518039481803995+intron-Distal6.0785016.65497K562EXOSC5
chr518097001809769+intron-Distal4.623425.83754K562HNRNPM
chr518040781804145+intron-Distal5.3945734.43998K562HNRNPM
chr518041501804242+intron-Distal4.378855.14871HepG2BCCIP
chr518095471809596+intron-Distal3.587864.63118HepG2HNRNPM
chr518042351804297+intron-Distal4.1646519.20769K562HNRNPM
chr518034361803506+intron-Distal5.6725536.01965K562EXOSC5
chr518047741804835+intron-Distal4.0744012.92922K562EXOSC5
chr518079511807993+intron-Distal3.150313.91899K562EXOSC5
chr518034611803519+intron-Distal5.096467.15660HepG2HNRNPM
chr518086321808713+intron-Distal4.912356.10662K562HNRNPM
chr518115491811663+intron-Distal4.2330615.48132K562KHSRP
chr518041441804206+intron-Distal4.801129.98098HepG2HNRNPM
chr518041471804242+intron-Distal3.983753.93293K562FUS
chr518037491803787+intron-Distal5.490819.68086K562EXOSC5
chr518041761804244+intron-Distal7.3993039.56674K562EXOSC5
chr518040261804081+intron-Distal5.8287713.41470HepG2HNRNPM
chr518045111804585+intron-Distal4.5897520.63985K562EXOSC5
chr518116601811714+intron-Distal4.188434.90655K562U2AF2
chr518092871809323+intron-Distal4.299503.89085K562EXOSC5
chr518087361808754+intron-Distal4.014993.30696K562EXOSC5
chr518081061808155+intron-Distal3.934355.20960K562EXOSC5
chr518116051811650+intron-Distal4.274294.61740K562U2AF1
chr518041711804204+intron-Distal4.8624428.70305K562HNRNPM
chr518096131809677+intron-Distal4.903677.88580K562HNRNPM
chr518042041804235+intron-Distal6.1598020.81172K562HNRNPM
chr518039201803959+intron-Distal4.962097.78465HepG2HNRNPM
chr518085521808620+intron-Distal3.818837.86844K562EXOSC5
chr518040301804069+intron-Distal5.0019915.14615K562EXOSC5
chr518094801809547+intron-Distal4.232487.67565HepG2HNRNPM
chr518114221811531+intron-Distal6.0284214.42007K562QKI
chr518097941809830+intron-Distal3.274363.61506K562NONO
chr518039171803957+intron-Distal5.9048317.38717K562HNRNPM
chr518098401809911+intron-Distal3.9951110.57645K562NONO
chr518041061804144+intron-Distal4.643374.12480HepG2HNRNPM
chr518059661806008+intron-Distal3.336463.48567K562SLTM
chr518035421803624+intron-Distal5.4979021.99215HepG2HNRNPM
chr518071111807154+intron-Distal4.128943.42967K562SLTM
chr518065911806645+intron-Distal4.348165.04868K562HNRNPM
chr518037871803855+intron-Distal6.7499123.69799K562EXOSC5
chr518040691804144+intron-Distal6.0748635.02994K562EXOSC5
chr518044451804486+intron-Distal4.4427913.98128K562EXOSC5
chr518042671804285+intron-Distal3.899157.56595K562EXOSC5
chr518080501808148+intron-Distal3.238573.93430K562FUS
chr518101521810199+intron-Distal4.362445.19780K562NONO
chr518096031809686+intron-Distal4.886095.72853HepG2HNRNPM
chr518114241811490+intron-Distal4.103146.74598HepG2QKI
chr518040191804078+intron-Distal6.9113431.76584K562HNRNPM
chr518041441804176+intron-Distal6.7117124.03439K562EXOSC5
chr518109421811037+intron-Distal4.220483.98636K562LIN28B
chr518041451804251+intron-Distal3.607255.38546K562RBFOX2
chr518033991803441+intron-Distal5.7317413.42189K562HNRNPM
chr518035661803637+intron-Distal5.9334531.35435K562EXOSC5
chr518041451804171+intron-Distal4.7246126.65986K562HNRNPM
chr518023841802432+intron-Proximal4.598648.54916K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFS6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFS6 is not available on ENCORE database.

  • 97 RBPs can affect the levels of NDUFS6.  








The Knockdown/knockout RNA-Seq assay for NDUFS6 is not available on ENCORE database.





97 RBPs can affect the gene expression of NDUFS6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFS6ENSG00000145494.7136.67170230.60230-0.754702.556401.52270HepG2AATF
NDUFS6ENSG00000145494.7615.17810440.230600.482602.519002.00930HepG2AKAP1
NDUFS6ENSG00000145494.7307.92470419.72390-0.446902.355901.71410HepG2CPSF6
NDUFS6ENSG00000145494.7322.97160184.570700.807106.417404.87120HepG2YBX3
NDUFS6ENSG00000145494.7636.46240421.663500.593904.108103.35830HepG2DDX3X
NDUFS6ENSG00000145494.7232.91980322.85570-0.471102.144801.45540HepG2DDX55
NDUFS6ENSG00000145494.7282.85720476.63350-0.752803.674302.54970HepG2DDX59
NDUFS6ENSG00000145494.7493.68980349.933700.496403.101102.03820HepG2DDX5
NDUFS6ENSG00000145494.7497.33080290.841500.773905.411504.15920HepG2EEF2
NDUFS6ENSG00000145494.799.79520234.21320-1.230806.817905.10830HepG2AGO1
NDUFS6ENSG00000145494.7592.42130401.611100.560704.707303.62260HepG2EWSR1
NDUFS6ENSG00000145494.7250.73030382.30150-0.608604.099603.15160HepG2FUBP3
NDUFS6ENSG00000145494.7249.88250182.966900.449601.863401.32130HepG2HNRNPA1
NDUFS6ENSG00000145494.7304.01240203.518700.578902.862502.15860HepG2HNRNPC
NDUFS6ENSG00000145494.7478.78480364.897500.391801.960701.36590HepG2HNRNPK
NDUFS6ENSG00000145494.7329.68230454.01120-0.461702.432601.83680HepG2HNRNPLL
NDUFS6ENSG00000145494.7455.04950342.230300.411002.348201.47060HepG2HNRNPM
NDUFS6ENSG00000145494.7319.25660202.173000.659005.063704.26360HepG2HNRNPU
NDUFS6ENSG00000145494.7273.58090206.512700.405602.237201.56940HepG2ILF2
NDUFS6ENSG00000145494.7213.62530355.97730-0.736704.587603.66950HepG2PABPC4
NDUFS6ENSG00000145494.7231.36340310.52860-0.424602.410401.68290HepG2PRPF4
NDUFS6ENSG00000145494.7320.30090427.23660-0.415602.266201.71840HepG2PUF60
NDUFS6ENSG00000145494.7550.85350453.537300.280302.076301.54760HepG2PUM1
NDUFS6ENSG00000145494.7734.57020510.264000.525605.003004.35820HepG2RBM22
NDUFS6ENSG00000145494.7352.09710180.042900.9675010.151009.03810HepG2SAFB2
NDUFS6ENSG00000145494.7351.72440209.958500.744206.628005.69850HepG2SMN1
NDUFS6ENSG00000145494.7531.50950421.842100.333302.359601.77600HepG2SRSF5
NDUFS6ENSG00000145494.7181.14950272.65850-0.589903.803903.17820HepG2SRSF9
NDUFS6ENSG00000145494.7641.91870479.743700.420004.083303.35320HepG2SUCLG1
NDUFS6ENSG00000145494.7200.63030321.36730-0.679703.653102.89230HepG2SUPV3L1
NDUFS6ENSG00000145494.7227.97530301.22390-0.402001.986201.49790HepG2TAF15
NDUFS6ENSG00000145494.7284.14740196.441600.532402.814902.31100HepG2TIAL1
NDUFS6ENSG00000145494.7323.73590198.205500.707704.302003.62920HepG2TRIM56
NDUFS6ENSG00000145494.7535.81730417.403200.360202.164901.39790HepG2TUFM
NDUFS6ENSG00000145494.7646.76200424.319400.608004.600103.79960HepG2U2AF1
NDUFS6ENSG00000145494.7292.63110189.820600.624303.055702.25990HepG2UCHL5
NDUFS6ENSG00000145494.7735.97860456.340700.689509.468408.46850HepG2UTP3
NDUFS6ENSG00000145494.7742.14880519.843000.513506.797406.03930HepG2ZNF622
NDUFS6ENSG00000145494.72473.434501674.495700.562704.541803.84670K562AGGF1
NDUFS6ENSG00000145494.72564.027701840.237400.478404.514603.18500K562AKAP8
NDUFS6ENSG00000145494.72994.774401742.442700.7812011.6907010.22250K562AKAP8L
NDUFS6ENSG00000145494.72976.251502327.764100.354503.024201.72420K562APOBEC3C
NDUFS6ENSG00000145494.71833.041402631.18900-0.521504.229903.53400K562AQR
NDUFS6ENSG00000145494.72536.922401828.344000.472403.953602.84440K562ATP5C1
NDUFS6ENSG00000145494.71212.31950927.706500.385904.431303.19720K562BCLAF1
NDUFS6ENSG00000145494.7586.11150992.82430-0.760403.900702.86420K562BOP1
NDUFS6ENSG00000145494.7978.104501296.52500-0.406602.922301.45700K562BUD13
NDUFS6ENSG00000145494.71574.236802560.08970-0.701503.959002.64500K562CNOT7
NDUFS6ENSG00000145494.7689.516401055.72960-0.614603.115702.28190K562CPSF6
NDUFS6ENSG00000145494.72548.729103244.94200-0.348402.627801.67790K562CELF1
NDUFS6ENSG00000145494.72463.282101874.654000.393902.871301.97780K562DKC1
NDUFS6ENSG00000145494.71335.54360904.125600.562703.778002.25120K562EEF2
NDUFS6ENSG00000145494.7824.351301163.55610-0.497204.890103.79540K562EIF4A3
NDUFS6ENSG00000145494.71026.981801422.56130-0.470103.274601.48290K562ESF1
NDUFS6ENSG00000145494.71750.985001337.985300.388003.419002.46800K562FIP1L1
NDUFS6ENSG00000145494.7783.787701124.89290-0.521303.576202.27020K562FKBP4
NDUFS6ENSG00000145494.7636.874401074.03930-0.754004.318403.24970K562FMR1
NDUFS6ENSG00000145494.7424.38410580.81950-0.452703.166001.72200K562FUS
NDUFS6ENSG00000145494.7188.52920514.45380-1.4483013.4845011.66970K562G3BP2
NDUFS6ENSG00000145494.71438.448102048.43700-0.510006.250904.57700K562GLRX3
NDUFS6ENSG00000145494.71474.646702396.12290-0.700304.673402.63050K562HNRNPAB
NDUFS6ENSG00000145494.7738.853101294.62370-0.8092012.6503011.45030K562HNRNPC
NDUFS6ENSG00000145494.72112.924501100.461700.9410013.5222011.04340K562HNRNPM
NDUFS6ENSG00000145494.71582.563501852.76060-0.227402.074201.30150K562HNRNPU
NDUFS6ENSG00000145494.71177.03470851.613700.466802.181001.30120K562IGF2BP2
NDUFS6ENSG00000145494.71211.170602337.76650-0.948707.356705.04400K562ILF2
NDUFS6ENSG00000145494.72420.395001848.977700.388403.123802.24310K562KIF1C
NDUFS6ENSG00000145494.7531.70670860.57120-0.694703.907402.78310K562KRR1
NDUFS6ENSG00000145494.7910.697801254.46060-0.462003.509501.89870K562LARP7
NDUFS6ENSG00000145494.71284.37830894.603500.521605.799404.56810K562MAGOH
NDUFS6ENSG00000145494.71165.87820892.726400.385003.572902.51110K562MATR3
NDUFS6ENSG00000145494.72730.611302071.348500.398602.547501.68100K562MBNL1
NDUFS6ENSG00000145494.71575.766102153.68720-0.450808.843807.47540K562MTPAP
NDUFS6ENSG00000145494.72072.056501451.881900.513004.020602.89960K562NAA15
NDUFS6ENSG00000145494.71654.541402392.81210-0.5323016.5120014.89710K562NSUN2
NDUFS6ENSG00000145494.71536.488702459.50430-0.678704.319102.75470K562PABPC1
NDUFS6ENSG00000145494.71141.07670874.665300.383503.585702.04300K562PCBP1
NDUFS6ENSG00000145494.71008.19490795.900900.341002.466901.54590K562PCBP2
NDUFS6ENSG00000145494.7882.813101293.79350-0.551404.777803.68700K562PCBP3
NDUFS6ENSG00000145494.7774.66100992.36550-0.357302.901702.08020K562POLR2G
NDUFS6ENSG00000145494.72381.377801518.805400.648808.700407.04490K562PPIG
NDUFS6ENSG00000145494.71418.94060849.947400.739307.183805.97790K562PRPF8
NDUFS6ENSG00000145494.7835.022401160.83900-0.475304.670603.45110K562PSIP1
NDUFS6ENSG00000145494.71257.12290869.193900.532306.499805.51640K562PTBP1
NDUFS6ENSG00000145494.72205.882803062.56710-0.473403.711502.46030K562PUM1
NDUFS6ENSG00000145494.73072.009501727.638400.8303013.2276012.08530K562PUS1
NDUFS6ENSG00000145494.72478.535601683.643800.557804.532503.79210K562RBM15
NDUFS6ENSG00000145494.7740.777201059.46810-0.516205.522904.11650K562RCC2
NDUFS6ENSG00000145494.7740.95270554.470700.418202.439001.50610K562RPS3
NDUFS6ENSG00000145494.71690.822602361.28490-0.481807.314506.03880K562SF3A3
NDUFS6ENSG00000145494.7717.08670534.571900.423702.064301.32760K562SF3B4
NDUFS6ENSG00000145494.7378.87410603.22250-0.671005.851703.31680K562SND1
NDUFS6ENSG00000145494.7663.806101004.31090-0.597402.824501.78720K562SRFBP1
NDUFS6ENSG00000145494.71808.679602419.20450-0.419609.151307.55860K562SRPK2
NDUFS6ENSG00000145494.71225.03570852.145700.523605.891904.86830K562SRSF1
NDUFS6ENSG00000145494.7781.08670535.263500.545104.729303.29110K562SRSF4
NDUFS6ENSG00000145494.71124.53940804.901100.482402.670001.64240K562SRSF5
NDUFS6ENSG00000145494.7513.21790677.66370-0.401002.996401.65570K562SSB
NDUFS6ENSG00000145494.71196.036101605.76670-0.425003.532002.08590K562STAU1
NDUFS6ENSG00000145494.7216.99780504.96610-1.218506.598303.90790K562TAF15
NDUFS6ENSG00000145494.71256.20390831.838900.594607.668006.20070K562TIA1
NDUFS6ENSG00000145494.7569.407601116.49020-0.9714012.7603010.63950K562TIAL1
NDUFS6ENSG00000145494.71141.92630816.515500.483804.394202.96290K562TRA2A
NDUFS6ENSG00000145494.7769.270001186.52030-0.625207.370005.66330K562TRIM56
NDUFS6ENSG00000145494.72275.347103246.10690-0.512604.453802.67310K562UBE2L3
NDUFS6ENSG00000145494.71491.396202537.15950-0.7666018.5034016.82490K562UPF1
NDUFS6ENSG00000145494.71412.403302170.95080-0.620205.917104.61220K562WDR3
NDUFS6ENSG00000145494.72234.838302964.06930-0.407404.485003.34430K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFS6 is not available on ENCORE database.





1 RBPs can affect the splicing of NDUFS6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSNDUFS6ENSG00000145494.7chr5+180153418016451801534180161818024341802488-0.057000.000010.00598shorterK562HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFS6 is not avaliable on ENCORE database.