TCP11L1

General Information

Gene Name       : TCP11L1
Gene ID             : ENSG00000176148.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TCP11L1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TCP11L1ENSG00000176148.157.888.958.41ENCSR000AEF
HepG2TCP11L1ENSG00000176148.155.217.206.21ENCSR985KAT
K562TCP11L1ENSG00000176148.153.243.613.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TCP11L1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TCP11L1 RNA is bound by 2 proteins.  







eCLIP assay for TCP11L1 is not avaliable on ENCORE database.





2 proteins are bound to TCP11L1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr113307865633078782+3'-UTR,CDS,intron-Distal,intron-Proximal3.419378.47761HepG2BCLAF1
chr113309489733094952+3'-UTR,intron-Distal4.199433.87930K562UPF1
chr113309529833095368+intron-Distal4.473183.54010K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TCP11L1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TCP11L1 is not available on ENCORE database.

  • 43 RBPs can affect the levels of TCP11L1.  








The Knockdown/knockout RNA-Seq assay for TCP11L1 is not available on ENCORE database.





43 RBPs can affect the gene expression of TCP11L1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TCP11L1ENSG00000176148.11144.59850251.03760-0.795903.579302.70830HepG2CIRBP
TCP11L1ENSG00000176148.11163.60150268.16660-0.712903.651902.87210HepG2CPSF6
TCP11L1ENSG00000176148.11325.36610219.881400.565202.127301.55190HepG2CELF1
TCP11L1ENSG00000176148.11133.47870223.47140-0.743502.366901.61120HepG2EIF4G2
TCP11L1ENSG00000176148.11116.20490210.19250-0.855004.255903.47830HepG2HNRNPA1
TCP11L1ENSG00000176148.11388.06960310.891700.319802.125901.49090HepG2HNRNPF
TCP11L1ENSG00000176148.11398.79740306.144900.381302.432501.75170HepG2IGF2BP1
TCP11L1ENSG00000176148.11386.13620265.635200.539602.890702.20350HepG2IGF2BP2
TCP11L1ENSG00000176148.11286.26130405.97120-0.504002.377901.61120HepG2LARP4
TCP11L1ENSG00000176148.11175.46590295.85030-0.753703.123902.08930HepG2MTPAP
TCP11L1ENSG00000176148.11191.82880280.08740-0.546103.140902.32200HepG2PRPF4
TCP11L1ENSG00000176148.11436.76930323.862500.431402.616402.00580HepG2QKI
TCP11L1ENSG00000176148.11334.90820217.140200.625002.308201.66080HepG2RAVER1
TCP11L1ENSG00000176148.11484.10100345.321000.487303.515602.55890HepG2RBM15
TCP11L1ENSG00000176148.11424.32650308.506200.459803.081302.54270HepG2RBM22
TCP11L1ENSG00000176148.11110.32170201.35140-0.868003.796402.55120HepG2RCC2
TCP11L1ENSG00000176148.11713.51870334.825701.0914015.0735013.71910HepG2RPLP0
TCP11L1ENSG00000176148.11150.78790228.68790-0.600902.437101.68250HepG2RPS2
TCP11L1ENSG00000176148.11198.88310132.232000.588702.243801.52860HepG2RRP9
TCP11L1ENSG00000176148.11240.67900311.33530-0.371401.804301.30970HepG2SF3B4
TCP11L1ENSG00000176148.11501.71070348.441200.525804.406203.81650HepG2SRFBP1
TCP11L1ENSG00000176148.11230.57480324.96950-0.495102.859102.38040HepG2SRSF1
TCP11L1ENSG00000176148.11217.57500302.52040-0.475502.769802.25690HepG2SSB
TCP11L1ENSG00000176148.11264.39570172.440500.616502.762102.08570HepG2SUPV3L1
TCP11L1ENSG00000176148.11189.12960282.73780-0.580102.773302.04820HepG2TARDBP
TCP11L1ENSG00000176148.11387.16300286.065300.436502.050001.50040HepG2U2AF1
TCP11L1ENSG00000176148.11374.03120231.390400.692702.921602.06270HepG2UBE2L3
TCP11L1ENSG00000176148.11563.12570276.392801.0266016.5784015.16600HepG2ZC3H8
TCP11L1ENSG00000176148.11250.78450362.81380-0.532803.545402.91640K562AGGF1
TCP11L1ENSG00000176148.11253.53870398.65520-0.652904.749803.37770K562AKAP8
TCP11L1ENSG00000176148.11224.71770377.51870-0.748405.465404.53100K562AKAP8L
TCP11L1ENSG00000176148.1196.37100217.83680-1.176606.452005.61720K562AQR
TCP11L1ENSG00000176148.11275.18690396.09760-0.525403.752302.67590K562ATP5C1
TCP11L1ENSG00000176148.11257.18260406.27160-0.659705.620904.31770K562DKC1
TCP11L1ENSG00000176148.11168.95460263.47650-0.641003.856402.75010K562EIF4G2
TCP11L1ENSG00000176148.11107.10420185.47760-0.792203.306002.48240K562GRSF1
TCP11L1ENSG00000176148.11249.99370400.66100-0.680505.206304.00310K562KIF1C
TCP11L1ENSG00000176148.11272.38850383.51550-0.493603.193702.01410K562MAK16
TCP11L1ENSG00000176148.11336.96430448.83880-0.413602.772501.86290K562MBNL1
TCP11L1ENSG00000176148.11195.68720314.60180-0.685003.122602.17630K562NAA15
TCP11L1ENSG00000176148.11300.38660185.083500.698503.609502.65840K562PCBP3
TCP11L1ENSG00000176148.11223.49150141.968000.654603.289302.41140K562POLR2G
TCP11L1ENSG00000176148.11118.81700191.15120-0.686003.025402.16240K562PPIG
TCP11L1ENSG00000176148.11232.70880374.43430-0.686203.948803.31670K562PUS1
TCP11L1ENSG00000176148.11248.10710364.79720-0.556103.649702.98200K562RBM15
TCP11L1ENSG00000176148.11163.14020245.39520-0.589002.950902.05520K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TCP11L1 is not available on ENCORE database.





2 RBPs can affect the splicing of TCP11L1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETCP11L1ENSG00000176148.11chr11+3307813333078269330761383307627133078660330787810.193000.000660.08046includedK562LARP4
MXETCP11L1ENSG00000176148.11chr11+33065295330654823307613833076271330611173306133833078660330787810.218000.004430.092551includedHepG2MATR3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TCP11L1 is not avaliable on ENCORE database.