WDSUB1

General Information

Gene Name       : WDSUB1
Gene ID             : ENSG00000196151.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: WDSUB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WDSUB1ENSG00000196151.106.075.375.72ENCSR000AEF
HepG2WDSUB1ENSG00000196151.106.2010.468.33ENCSR985KAT
K562WDSUB1ENSG00000196151.107.227.477.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WDSUB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WDSUB1 RNA is bound by 13 proteins.  







eCLIP assay for WDSUB1 is not avaliable on ENCORE database.





13 proteins are bound to WDSUB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2160143093160143195-5'-UTR,intron-Distal,intron-Proximal5.222444.11950K562DDX3X
chr2160116325160116367-CDS,intron-Distal,intron-Proximal4.332853.35169HepG2U2AF2
chr2160092559160092626-CDS,intron-Distal3.255783.69481K562UCHL5
chr2160104817160104897-CDS,intron-Distal,intron-Proximal4.185544.19412K562EFTUD2
chr2160104891160104959-CDS,intron-Distal3.416555.00751HepG2BCLAF1
chr2160112795160112887-CDS,intron-Distal,intron-Proximal3.636814.48818HepG2GRWD1
chr2160112715160112758-CDS,intron-Distal3.443335.79905HepG2BCLAF1
chr2160092586160092616-CDS,intron-Distal4.220393.02457HepG2BCLAF1
chr2160127748160127824-intron-Distal4.180014.07352K562KHSRP
chr2160109153160109268-intron-Distal3.148103.57533K562KHSRP
chr2160131131160131226-intron-Distal4.058415.63625HepG2HNRNPM
chr2160124818160124859-intron-Distal3.495653.90822HepG2HNRNPM
chr2160102507160102536-intron-Distal3.846023.54208HepG2SUGP2
chr2160103111160103134-intron-Distal3.977533.04224HepG2SUGP2
chr2160102078160102111-intron-Distal3.127733.10883HepG2SUGP2
chr2160126670160126712-intron-Distal3.414774.08528HepG2SUGP2
chr2160097385160097508-intron-Distal3.378484.49882K562MATR3
chr2160109014160109170-intron-Distal3.640233.53952HepG2KHSRP
chr2160126014160126102-intron-Distal4.812705.04879HepG2SUGP2
chr2160127218160127265-intron-Distal3.299464.33009HepG2SUGP2
chr2160131131160131260-intron-Distal3.115086.35394HepG2SUGP2
chr2160126246160126331-intron-Distal3.040656.35394HepG2SUGP2
chr2160109058160109146-intron-Distal3.081304.56635K562KHSRP
chr2160126255160126333-intron-Distal3.299503.43829K562EXOSC5
chr2160125903160125995-intron-Distal4.041673.29197K562HNRNPM
chr2160129692160129880-intron-Distal3.528517.19702K562KHSRP
chr2160131014160131092-intron-Distal3.611274.57452HepG2SUGP2
chr2160116374160116459-intron-Distal,intron-Proximal5.518367.94162K562QKI
chr2160125250160125286-intron-Distal3.265553.84025HepG2SUGP2
chr2160131147160131215-intron-Distal4.026233.04182K562HNRNPM
chr2160126489160126578-intron-Distal3.535276.79980HepG2SUGP2
chr2160102192160102243-intron-Distal3.157835.10681HepG2SUGP2
chr2160107180160107282-intron-Distal4.297873.74583HepG2PTBP1
chr2160136693160136814-intron-Distal3.940583.02234K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WDSUB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WDSUB1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of WDSUB1.  








The Knockdown/knockout RNA-Seq assay for WDSUB1 is not available on ENCORE database.





73 RBPs can affect the gene expression of WDSUB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WDSUB1ENSG00000196151.6164.87200274.32360-0.734505.370804.57840HepG2ACO1
WDSUB1ENSG00000196151.6241.13810520.91900-1.111209.395308.47930HepG2AKAP1
WDSUB1ENSG00000196151.6132.51810218.84800-0.723702.543901.64780HepG2BCCIP
WDSUB1ENSG00000196151.6188.37310274.30140-0.542203.356002.63600HepG2CKAP4
WDSUB1ENSG00000196151.6185.25060294.21510-0.667402.682801.93020HepG2CNOT7
WDSUB1ENSG00000196151.6130.26430194.14940-0.575702.447101.41090HepG2CPSF7
WDSUB1ENSG00000196151.6193.90360336.69740-0.796106.800805.87820HepG2CELF1
WDSUB1ENSG00000196151.6286.23770362.09450-0.339202.105801.44670HepG2DAZAP1
WDSUB1ENSG00000196151.6139.86720223.57910-0.676703.318802.58030HepG2DDX21
WDSUB1ENSG00000196151.6330.54600499.01290-0.594203.688502.97640HepG2DDX3X
WDSUB1ENSG00000196151.6238.61310428.63450-0.845105.694704.83600HepG2DDX6
WDSUB1ENSG00000196151.6303.85760412.08440-0.439502.147301.61770HepG2EIF2S1
WDSUB1ENSG00000196151.6330.06510455.41510-0.464402.287801.70430HepG2EIF4A3
WDSUB1ENSG00000196151.6280.94740443.38500-0.658303.290002.54280HepG2EIF4B
WDSUB1ENSG00000196151.6158.00220268.09640-0.762804.713903.62810HepG2EWSR1
WDSUB1ENSG00000196151.6163.11870238.11200-0.545702.017901.35470HepG2FIP1L1
WDSUB1ENSG00000196151.6277.27000459.45420-0.728604.999604.09010HepG2FXR1
WDSUB1ENSG00000196151.6271.73460426.23250-0.649403.983303.19300HepG2G3BP1
WDSUB1ENSG00000196151.6199.89510126.801900.656603.191602.42460HepG2HNRNPF
WDSUB1ENSG00000196151.6246.80230431.54920-0.806205.941404.94800HepG2HNRNPK
WDSUB1ENSG00000196151.6241.37300329.85920-0.450603.110102.39850HepG2HNRNPL
WDSUB1ENSG00000196151.6163.81690104.310100.651102.208801.64000HepG2HNRNPLL
WDSUB1ENSG00000196151.6132.66090186.76880-0.493502.129901.59000HepG2HNRNPU
WDSUB1ENSG00000196151.6270.08900433.26360-0.681804.356503.52680HepG2IGF2BP2
WDSUB1ENSG00000196151.6198.64020306.25920-0.624602.871802.02600HepG2LARP4
WDSUB1ENSG00000196151.6139.91090227.76980-0.703103.402302.14530HepG2LARP7
WDSUB1ENSG00000196151.6292.66080459.61450-0.651204.150803.35030HepG2MAGOH
WDSUB1ENSG00000196151.6265.98010462.19350-0.797205.331504.48040HepG2MATR3
WDSUB1ENSG00000196151.6116.16550192.66180-0.729903.388402.49660HepG2MSI2
WDSUB1ENSG00000196151.6262.40720473.08610-0.850306.398905.45170HepG2NCBP2
WDSUB1ENSG00000196151.6229.93510359.04880-0.643004.938903.92460HepG2NOL12
WDSUB1ENSG00000196151.6249.99610421.33860-0.753105.145704.17310HepG2PABPC4
WDSUB1ENSG00000196151.6220.81210430.80850-0.9642011.3094010.21680HepG2PCBP1
WDSUB1ENSG00000196151.6197.04770438.35900-1.1536015.4088014.31820HepG2PTBP1
WDSUB1ENSG00000196151.6261.38930342.72630-0.390901.968701.45430HepG2PUF60
WDSUB1ENSG00000196151.6235.90270363.79890-0.624905.585704.80450HepG2PUM1
WDSUB1ENSG00000196151.6189.27660279.42190-0.561903.582102.90020HepG2PUS1
WDSUB1ENSG00000196151.6319.57750474.76380-0.571004.431403.66660HepG2QKI
WDSUB1ENSG00000196151.6324.44650430.87480-0.409302.332901.70840HepG2RBM25
WDSUB1ENSG00000196151.6171.99850274.65170-0.675203.217202.14360HepG2RBM27
WDSUB1ENSG00000196151.6261.88820487.85540-0.897509.137408.25780HepG2NELFE
WDSUB1ENSG00000196151.6261.07160454.36390-0.799408.129907.15740HepG2RECQL
WDSUB1ENSG00000196151.6203.29430136.618200.573302.196001.57810HepG2RPLP0
WDSUB1ENSG00000196151.677.59760150.44160-0.955103.745503.04100HepG2RPS19
WDSUB1ENSG00000196151.6126.33670256.28840-1.020505.342104.38770HepG2SF3A3
WDSUB1ENSG00000196151.6292.32540456.39680-0.642705.710904.91270HepG2SF3B4
WDSUB1ENSG00000196151.6117.92930193.97730-0.718003.969203.22150HepG2SMN1
WDSUB1ENSG00000196151.6321.82320476.37600-0.565804.763904.18620HepG2SRSF1
WDSUB1ENSG00000196151.6242.11520338.36810-0.482903.149202.48720HepG2SRSF5
WDSUB1ENSG00000196151.6192.68990124.583600.629102.910702.19960HepG2SRSF7
WDSUB1ENSG00000196151.6277.53340387.55420-0.481703.551102.94340HepG2SRSF9
WDSUB1ENSG00000196151.6267.02840384.83840-0.527304.211303.47330HepG2SUCLG1
WDSUB1ENSG00000196151.699.07780160.74130-0.698102.881101.92060HepG2SUPT6H
WDSUB1ENSG00000196151.6305.09290428.17570-0.489003.438502.82420HepG2TAF15
WDSUB1ENSG00000196151.6294.23650393.44530-0.419202.425901.64160HepG2TIA1
WDSUB1ENSG00000196151.6131.06430183.10120-0.482401.880301.39730HepG2TRIM56
WDSUB1ENSG00000196151.6239.88200354.35470-0.562902.477601.68880HepG2UBE2L3
WDSUB1ENSG00000196151.6137.12120219.43920-0.678403.572102.90710HepG2UTP3
WDSUB1ENSG00000196151.6166.45700255.59950-0.618702.584901.56470HepG2XRCC6
WDSUB1ENSG00000196151.6149.76930249.97450-0.739004.189603.55480HepG2ZNF622
WDSUB1ENSG00000196151.6368.47390278.026300.406202.238101.71880K562AGGF1
WDSUB1ENSG00000196151.6380.22330289.293700.394201.894601.35000K562AKAP8L
WDSUB1ENSG00000196151.6457.57980326.200600.488202.907901.40510K562DDX19B
WDSUB1ENSG00000196151.6144.35670209.91000-0.540102.338501.60400K562EIF3G
WDSUB1ENSG00000196151.6379.18280229.827200.722202.667401.47660K562HNRNPA2B1
WDSUB1ENSG00000196151.6447.59670307.031400.543703.446402.51350K562KIF1C
WDSUB1ENSG00000196151.6188.16990276.76480-0.556602.735301.76040K562PCBP2
WDSUB1ENSG00000196151.6102.50290160.05330-0.642902.538601.67800K562PSIP1
WDSUB1ENSG00000196151.6196.30680302.18890-0.622303.995603.21240K562PTBP1
WDSUB1ENSG00000196151.6446.44100286.937800.637604.240903.59060K562PUS1
WDSUB1ENSG00000196151.6403.94920279.546300.531003.506302.85180K562RBM15
WDSUB1ENSG00000196151.6202.47580289.81030-0.517402.674101.84870K562RBM22
WDSUB1ENSG00000196151.688.89970145.98230-0.715502.461801.53110K562RCC2
WDSUB1ENSG00000196151.6276.78350205.162800.431902.125801.40430K562SF3A3
WDSUB1ENSG00000196151.6197.73000299.83120-0.600603.270802.50080K562TARDBP
WDSUB1ENSG00000196151.6612.34280479.706400.352102.125601.37950K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WDSUB1 is not available on ENCORE database.





13 RBPs can affect the splicing of WDSUB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEWDSUB1ENSG00000196151.6chr2-160132056160132149160112706160112886160136271160136456-0.331000.001800.04336excludedHepG2HNRNPK
SEWDSUB1ENSG00000196151.6chr2-160136271160136456160112706160112886160139182160139604-0.194000.007670.06586excludedK562AQR
SEWDSUB1ENSG00000196151.6chr2-1601048821601050231600923081600927011601127061601128860.149000.000010.00394includedK562DROSHA
SEWDSUB1ENSG00000196151.6chr2-160104882160105023160092308160092701160112706160112886-0.109000.004850.06083excludedK562PUS1
SEWDSUB1ENSG00000196151.6chr2-160132056160132149160112706160112886160136271160136456-0.690000.000000.00011excludedK562PUS1
SEWDSUB1ENSG00000196151.6chr2-160112706160112886160104882160105023160132056160132149-0.392000.000270.02349excludedHepG2FTO
SEWDSUB1ENSG00000196151.6chr2-1601048821601050231600923081600927011601127061601128860.121000.000090.02380includedK562LARP4
SEWDSUB1ENSG00000196151.6chr2-1601048821601050231600923081600927011601127061601128860.123000.000600.04553includedK562HNRNPUL1
SEWDSUB1ENSG00000196151.6chr2-160132056160132149160112706160112886160136271160136456-0.434000.003210.08041excludedK562UTP18
SEWDSUB1ENSG00000196151.6chr2-160104882160105023160092308160092701160112706160112886-0.144000.000360.01220excludedK562RBM15
SEWDSUB1ENSG00000196151.6chr2-160132056160132149160112706160112886160136271160136456-0.493000.000450.01473excludedK562RBM15
SEWDSUB1ENSG00000196151.6chr2-160104882160105023160092311160092701160112706160112886-0.180000.002300.03815excludedK562HNRNPC
MXEWDSUB1ENSG00000196151.6chr2-1601127061601128861601320561601321491601048821601050231601362711601364560.252000.000260.007901includedHepG2FTO
MXEWDSUB1ENSG00000196151.6chr2-160112706160112886160132056160132149160092344160092701160136271160136456-0.443000.000040.002562includedK562RBM15
MXEWDSUB1ENSG00000196151.6chr2-160112706160112886160136271160136456160092344160092701160139182160139604-0.159000.003980.058432includedK562PUS1
MXEWDSUB1ENSG00000196151.6chr2-160112706160112886160132056160132149160092344160092701160136271160136456-0.645000.000000.000002includedK562PUS1
MXEWDSUB1ENSG00000196151.6chr2-160112706160112886160132056160132149160092344160092701160136271160136456-0.310000.002520.073052includedK562AGGF1
MXEWDSUB1ENSG00000196151.6chr2-1601127061601128861601320561601321491600923441600927011601362711601364560.274000.005980.075911includedK562SRSF1
MXEWDSUB1ENSG00000196151.6chr2-1601362711601364561601391821601396041601127061601128861601430931601431800.405000.007080.085381includedK562SRSF1
MXEWDSUB1ENSG00000196151.6chr2-160112706160112886160132056160132149160092344160092701160136271160136456-0.455000.000120.008392includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WDSUB1 is not avaliable on ENCORE database.