APOM

General Information

Gene Name       : APOM
Gene ID             : ENSG00000204444.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: APOM)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878APOMENSG00000204444.103.285.564.42ENCSR000AEF
HepG2APOMENSG00000204444.10247.75246.16246.95ENCSR985KAT
K562APOMENSG00000204444.109.4711.6810.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for APOM is not avaliable on ENCORE database.



Proteins bound to RNA
  • APOM RNA is bound by 14 proteins.  







eCLIP assay for APOM is not avaliable on ENCORE database.





14 proteins are bound to APOM RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63162584431625859+3'-UTR,CDS3.3072218.96993HepG2LARP4
chr63162568031625766+3'-UTR,intron-Distal,intron-Proximal3.3720510.50009HepG2LSM11
chr63162585931625881+3'-UTR,CDS3.8784531.49599HepG2LARP4
chr63162584031625861+3'-UTR,CDS,intron-Proximal4.008398.44175HepG2RPS3
chr63162424831624298+3'-UTR,CDS,intron-Proximal3.493765.90734HepG2DDX3X
chr63162418331624279+3'-UTR,CDS,intron-Proximal4.8000011.08778HepG2AQR
chr63162429131624338+3'-UTR,CDS3.136994.35793HepG2SND1
chr63162589031625953+3'-UTR4.7177582.06627HepG2LARP4
chr63162434231624404+3'-UTR,CDS,intron-Proximal3.5317829.69203HepG2SND1
chr63162588131625890+3'-UTR4.6319642.79781HepG2LARP4
chr63162427131624311+3'-UTR,CDS4.382497.61854HepG2RPS3
chr63162424731624271+3'-UTR,CDS,intron-Proximal5.0675912.50152HepG2RPS3
chr63162568631625726+3'-UTR,intron-Distal4.048674.79983HepG2U2AF2
chr63162579031625832+3'-UTR,intron-Proximal3.981289.92273HepG2U2AF1
chr63162587431625920+3'-UTR3.8961810.06921HepG2RPS3
chr63162433931624402+3'-UTR,CDS3.1325815.03572HepG2RPS3
chr63162551831625591+3'-UTR,CDS,intron-Proximal3.489145.64887HepG2TIA1
chr63162560331625658+3'-UTR,intron-Distal3.143485.35897HepG2PRPF4
chr63162551031625564+3'-UTR,CDS,intron-Proximal4.5759116.33335HepG2TIAL1
chr63162584031625844+3'-UTR,CDS,intron-Proximal3.0158313.44236HepG2LARP4
chr63162578531625878+3'-UTR,CDS,intron-Proximal3.9036925.25474HepG2U2AF2
chr63162370831623755+5'-UTR,CDS,intron-Distal3.651275.57370HepG2DDX3X
chr63162379031623821+CDS,intron-Distal5.851196.02643HepG2DDX3X
chr63162515531625176+CDS,intron-Proximal3.9814017.88985HepG2SND1
chr63162517631625209+CDS4.5544623.12006HepG2SND1
chr63162542831625477+CDS3.2052311.32510HepG2RPS3
chr63162544231625484+CDS3.164038.15813HepG2SND1
chr63162510231625159+CDS,intron-Proximal3.531944.09623HepG2SF3B4
chr63162500131625008+CDS,intron-Proximal3.1217310.64066HepG2SND1
chr63162506331625075+CDS3.488033.51759HepG2YBX3
chr63162375531623790+CDS,intron-Distal4.416735.84843HepG2DDX3X
chr63162520931625255+CDS4.0922638.18895HepG2SND1
chr63162503031625057+CDS3.5432923.54351HepG2SND1
chr63162549731625500+CDS3.6539514.19826HepG2LARP4
chr63162500831625030+CDS3.6013816.11511HepG2SND1
chr63162500131625031+CDS,intron-Proximal3.314817.99607HepG2YBX3
chr63162506831625075+CDS3.7492917.62698HepG2SND1
chr63162505731625068+CDS3.8329921.21229HepG2SND1
chr63162383131623857+CDS,intron-Distal4.696148.20930HepG2DDX3X
chr63162548831625497+CDS3.1942714.25087HepG2LARP4
chr63162383931623857+CDS,intron-Distal4.724177.73437HepG2RPS3
chr63162540231625415+CDS3.802168.86547HepG2SND1
chr63162404531624084+intron-Distal4.106834.36329HepG2PRPF4
chr63162385731623895+intron-Distal,intron-Proximal4.983554.97857HepG2AQR
chr63162529531625329+intron-Proximal5.0803610.88793HepG2EFTUD2
chr63162494231624994+intron-Proximal3.192913.60305HepG2SF3B4
chr63162525531625315+intron-Proximal4.795273.59236HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for APOM is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for APOM is not available on ENCORE database.

  • 147 RBPs can affect the levels of APOM.  








The Knockdown/knockout RNA-Seq assay for APOM is not available on ENCORE database.





147 RBPs can affect the gene expression of APOM :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
APOMENSG00000204444.61222.565903037.62210-1.3130036.6840033.66480HepG2AATF
APOMENSG00000204444.6798.452004188.01050-2.391009.844108.23680HepG2ABCF1
APOMENSG00000204444.6415.246403749.39950-3.17460177.16880174.38210HepG2ACO1
APOMENSG00000204444.6889.516602936.51280-1.7230050.6309047.47660HepG2ADAR
APOMENSG00000204444.6999.9032010537.89180-3.39770148.83760146.10170HepG2AKAP1
APOMENSG00000204444.61422.934003766.64200-1.4044043.1998040.78850HepG2AKAP8L
APOMENSG00000204444.65005.134002229.487501.1666021.9946019.84020HepG2BCLAF1
APOMENSG00000204444.62234.65350664.167001.7503025.4677023.95330HepG2BOP1
APOMENSG00000204444.6973.498303107.93610-1.674709.725507.90750HepG2CCAR1
APOMENSG00000204444.65199.754108283.95360-0.671909.963308.57550HepG2CIRBP
APOMENSG00000204444.61590.491503748.13580-1.2367062.9537060.77550HepG2CKAP4
APOMENSG00000204444.62447.21410609.674002.0049043.1423040.88990HepG2CPSF6
APOMENSG00000204444.64833.275403446.403800.487802.554801.49310HepG2CPSF7
APOMENSG00000204444.6395.059401584.78190-2.0041059.1074055.60850HepG2CSTF2
APOMENSG00000204444.62420.807104993.43160-1.0445026.1675024.60320HepG2CELF1
APOMENSG00000204444.67332.943205368.313000.4498017.5231015.94720HepG2DAZAP1
APOMENSG00000204444.61761.048703467.45110-0.9774016.7439015.08860HepG2DDX19B
APOMENSG00000204444.63582.955503015.561100.248602.554201.44300HepG2DDX1
APOMENSG00000204444.6377.530603350.44860-3.14970169.05240165.68360HepG2DDX21
APOMENSG00000204444.62408.892903279.47570-0.445106.191604.83330HepG2DDX24
APOMENSG00000204444.63446.334001910.989600.8506012.6218010.09840HepG2DDX28
APOMENSG00000204444.65303.027402698.159300.9747018.1651015.40130HepG2DDX47
APOMENSG00000204444.61930.346803094.53850-0.6809012.9063010.41750HepG2DDX52
APOMENSG00000204444.64912.439903351.909600.551403.500602.37090HepG2DDX5
APOMENSG00000204444.63453.989608670.90770-1.3279027.5583025.91730HepG2DDX6
APOMENSG00000204444.65687.938002851.955800.9959025.1009022.71600HepG2DHX30
APOMENSG00000204444.6930.280503587.04330-1.9471098.4518096.06300HepG2DKC1
APOMENSG00000204444.63913.317602956.932300.404203.580802.78670HepG2DNAJC21
APOMENSG00000204444.63383.556102930.807600.207103.323602.62120HepG2DNAJC2
APOMENSG00000204444.61344.399703691.87560-1.4574039.2025036.63240HepG2EEF2
APOMENSG00000204444.61994.697803175.08280-0.670603.005701.78030HepG2EIF2S2
APOMENSG00000204444.6822.513002996.81370-1.8653050.9372047.65320HepG2EIF3D
APOMENSG00000204444.61063.740003164.49400-1.5728061.0932057.90810HepG2EIF3G
APOMENSG00000204444.63725.968509212.95690-1.3060026.7815024.83990HepG2EIF4A3
APOMENSG00000204444.62586.779908969.41500-1.7939037.7500035.43820HepG2EIF4B
APOMENSG00000204444.66381.708505296.904300.268703.666502.72550HepG2EIF4G1
APOMENSG00000204444.67180.496105073.963500.500905.878404.71110HepG2EIF4G2
APOMENSG00000204444.61906.452103626.27000-0.927604.358203.01540HepG2ESF1
APOMENSG00000204444.63186.102405621.39440-0.819108.091307.15650HepG2ETF1
APOMENSG00000204444.62145.191903663.43480-0.7721016.2599014.34850HepG2EWSR1
APOMENSG00000204444.62090.060402678.73660-0.358004.369802.87160HepG2FAM120A
APOMENSG00000204444.6600.627804228.36430-2.8156013.6166012.10590HepG2FIP1L1
APOMENSG00000204444.64151.894402099.894400.9834015.4866012.97090HepG2FKBP4
APOMENSG00000204444.65057.108306756.68960-0.418005.570904.46640HepG2FUBP3
APOMENSG00000204444.61622.980003897.38820-1.2639017.8086015.40020HepG2FUS
APOMENSG00000204444.61934.699709294.39120-2.2643086.4185083.27340HepG2FXR1
APOMENSG00000204444.65981.523108622.48740-0.527605.514904.58850HepG2G3BP1
APOMENSG00000204444.64291.978609153.12220-1.0926024.6128022.13410HepG2G3BP2
APOMENSG00000204444.6305.930302668.22610-3.12460132.71100128.83610HepG2GEMIN5
APOMENSG00000204444.62379.800003650.36690-0.617204.021802.79200HepG2GNB2L1
APOMENSG00000204444.61626.686602990.30830-0.878408.667906.71600HepG2GRSF1
APOMENSG00000204444.62483.100003672.64430-0.564703.817701.98110HepG2GTF2F1
APOMENSG00000204444.6364.293702985.26040-3.03470153.18310150.17730HepG2HNRNPA1
APOMENSG00000204444.66111.304204934.044400.308603.769602.70500HepG2HNRNPA2B1
APOMENSG00000204444.61710.464802667.34370-0.641005.832603.74770HepG2HNRNPAB
APOMENSG00000204444.63974.318903320.545600.259202.204401.57800HepG2HNRNPC
APOMENSG00000204444.64579.076602798.071300.710506.628304.32450HepG2HNRNPD
APOMENSG00000204444.65357.936401294.148502.04960112.18380109.16000HepG2HNRNPF
APOMENSG00000204444.63737.907708729.70340-1.2237034.7894032.60000HepG2HNRNPK
APOMENSG00000204444.62712.850204889.86380-0.8500017.6417016.07750HepG2HNRNPL
APOMENSG00000204444.63011.71090659.382202.1913024.3156022.74970HepG2HNRNPLL
APOMENSG00000204444.61189.221502915.94510-1.293906.966105.55800HepG2HNRNPM
APOMENSG00000204444.64888.715703298.592500.5675017.7684016.33560HepG2HNRNPU
APOMENSG00000204444.64928.447801274.336001.951306.665105.58540HepG2IGF2BP1
APOMENSG00000204444.63788.015108764.77510-1.2103028.6481026.75840HepG2IGF2BP2
APOMENSG00000204444.61327.420108224.53690-2.6313027.7866025.08410HepG2IGF2BP3
APOMENSG00000204444.64565.014603369.403800.4380015.1997013.63950HepG2ILF2
APOMENSG00000204444.64292.903403149.175100.446902.793001.46410HepG2ILF3
APOMENSG00000204444.63941.955203427.142100.201802.486501.51850HepG2KIF1C
APOMENSG00000204444.6946.943903284.15440-1.794208.816907.32840HepG2LARP4
APOMENSG00000204444.64849.442503587.948300.434603.431601.52940HepG2LSM11
APOMENSG00000204444.67177.936309297.63110-0.373302.468501.84850HepG2MAGOH
APOMENSG00000204444.61531.571603028.71670-0.983706.457904.08930HepG2MARK2
APOMENSG00000204444.6967.139109349.84720-3.27310131.17300127.62580HepG2MATR3
APOMENSG00000204444.61527.668303136.31800-1.0377011.262909.28370HepG2METAP2
APOMENSG00000204444.61238.328003419.86710-1.465508.106506.78730HepG2MSI2
APOMENSG00000204444.61347.84240672.888301.002103.413502.32910HepG2MTPAP
APOMENSG00000204444.63644.883809570.23340-1.3927033.9411031.93300HepG2NCBP2
APOMENSG00000204444.62983.592205323.25370-0.8353020.5022018.55110HepG2NOL12
APOMENSG00000204444.6628.948702317.09450-1.8813025.2812021.91080HepG2NONO
APOMENSG00000204444.61286.66650584.802601.137506.442205.32720HepG2NSUN2
APOMENSG00000204444.61847.545503265.04760-0.8215029.1281026.95570HepG2PARN
APOMENSG00000204444.66195.237809056.93850-0.547908.064207.11730HepG2PCBP1
APOMENSG00000204444.61166.859703689.48340-1.6608027.1624024.35730HepG2PCBP2
APOMENSG00000204444.64947.680203432.196500.527503.922501.93130HepG2PHF6
APOMENSG00000204444.62004.461502478.32050-0.306102.914601.65090HepG2PKM
APOMENSG00000204444.61549.326803878.59520-1.3239017.5888014.98790HepG2PRPF6
APOMENSG00000204444.6442.886301945.86760-2.1354061.4898058.50290HepG2PRPF8
APOMENSG00000204444.61932.484204081.91770-1.078808.163905.22780HepG2PSIP1
APOMENSG00000204444.65295.001209215.32970-0.7994014.3233013.26980HepG2PTBP1
APOMENSG00000204444.62951.634805394.77590-0.8700015.1834014.02380HepG2PUM1
APOMENSG00000204444.62255.000505390.66350-1.2573016.7287015.16520HepG2PUM2
APOMENSG00000204444.67777.304409981.37570-0.360005.280504.45850HepG2QKI
APOMENSG00000204444.6468.215803560.54010-2.9269056.4993053.81870HepG2RAVER1
APOMENSG00000204444.62551.318304032.26310-0.6603014.9828013.24200HepG2RBM15
APOMENSG00000204444.6592.059704698.53810-2.9884056.9410055.18910HepG2RBM22
APOMENSG00000204444.62043.520704311.11600-1.077009.201007.37670HepG2RBM27
APOMENSG00000204444.61570.071703500.80060-1.1569010.167408.17780HepG2RCC2
APOMENSG00000204444.6577.8848010256.14600-4.14960167.20180164.72750HepG2NELFE
APOMENSG00000204444.62767.300409551.53720-1.7873063.1005060.99890HepG2RECQL
APOMENSG00000204444.63032.519501394.576301.1206017.4915016.06410HepG2RPLP0
APOMENSG00000204444.62491.427003497.34760-0.489302.987102.00810HepG2RPS10
APOMENSG00000204444.6301.648002916.20580-3.27320189.69050186.22830HepG2RPS19
APOMENSG00000204444.61273.193503976.27990-1.6430017.9755016.06520HepG2RPS2
APOMENSG00000204444.64362.061603243.656400.427302.819702.01330HepG2RPS3A
APOMENSG00000204444.62462.790204058.60810-0.720704.981003.52240HepG2RPS5
APOMENSG00000204444.64131.923202937.545200.4921015.2539013.92580HepG2SAFB2
APOMENSG00000204444.6823.182002575.58720-1.645607.492905.10850HepG2SF1
APOMENSG00000204444.6476.667804651.85090-3.2867097.5215093.73520HepG2SF3A3
APOMENSG00000204444.62879.61320652.551302.1416050.4518047.98860HepG2SF3B1
APOMENSG00000204444.62998.588009595.14370-1.6780051.4283049.50850HepG2SF3B4
APOMENSG00000204444.6516.335402500.31930-2.2757010.468407.38790HepG2SFPQ
APOMENSG00000204444.6843.185203425.67880-2.02250198.30640194.97990HepG2SMN1
APOMENSG00000204444.62607.114003629.84960-0.477503.307702.25100HepG2SMNDC1
APOMENSG00000204444.62502.35410726.116101.7849018.9611016.96510HepG2SNRNP70
APOMENSG00000204444.61431.247005306.98960-1.8906028.0788026.91770HepG2SRFBP1
APOMENSG00000204444.61420.7876010014.92780-2.81740101.97390100.09380HepG2SRSF1
APOMENSG00000204444.62484.178805017.81680-1.0143019.7338018.26770HepG2SRSF5
APOMENSG00000204444.69292.395601271.564702.8693051.8637049.67150HepG2SRSF7
APOMENSG00000204444.61452.443708147.39740-2.4879084.2431082.08290HepG2SRSF9
APOMENSG00000204444.6334.886304608.00930-3.7824073.8107072.08460HepG2SSB
APOMENSG00000204444.64478.620306388.81030-0.512502.833801.53690HepG2SSRP1
APOMENSG00000204444.61122.822002821.60530-1.3294021.3957018.28990HepG2STIP1
APOMENSG00000204444.61776.460505706.35650-1.6836059.5226057.33920HepG2SUCLG1
APOMENSG00000204444.64195.176002853.226200.556003.103602.11290HepG2SUPT6H
APOMENSG00000204444.61849.352002511.44950-0.441502.610901.95160HepG2SUPV3L1
APOMENSG00000204444.63872.130809000.90600-1.2169033.2528031.58990HepG2TAF15
APOMENSG00000204444.61885.82070643.183701.5518017.0216015.48510HepG2TARDBP
APOMENSG00000204444.62904.144101683.268100.786709.361007.74810HepG2TFIP11
APOMENSG00000204444.65538.092308271.56310-0.5788010.208608.62290HepG2TIA1
APOMENSG00000204444.6709.156003205.21640-2.17620116.06630113.74910HepG2TIAL1
APOMENSG00000204444.62155.997203574.98220-0.729606.599204.39680HepG2TRA2A
APOMENSG00000204444.61747.261102381.21240-0.446603.249001.54350HepG2TROVE2
APOMENSG00000204444.6784.175902677.38380-1.771608.309406.51540HepG2U2AF2
APOMENSG00000204444.63080.697005255.78070-0.7706010.668308.98180HepG2UBE2L3
APOMENSG00000204444.61114.768002299.42250-1.0445012.4419010.24220HepG2UPF2
APOMENSG00000204444.63145.039904240.36300-0.431108.899707.14630HepG2UTP18
APOMENSG00000204444.61453.595903982.98460-1.4542077.4682075.01170HepG2UTP3
APOMENSG00000204444.64775.547402905.347900.716906.650004.96060HepG2XPO5
APOMENSG00000204444.61138.248203915.55270-1.7824033.1394030.26080HepG2XRCC6
APOMENSG00000204444.6765.430102472.25000-1.6915045.8358043.27180HepG2XRN2
APOMENSG00000204444.62285.771603002.53590-0.393503.515502.77220HepG2ZC3H8
APOMENSG00000204444.63192.155404537.23620-0.5073014.5915013.58000HepG2ZNF622
APOMENSG00000204444.61849.470003557.09950-0.9436011.169908.48420HepG2ZRANB2
APOMENSG00000204444.638.6186086.47850-1.163003.908002.80810K562EFTUD2
APOMENSG00000204444.645.5979092.55780-1.021403.141902.03400K562EIF3D
APOMENSG00000204444.6121.2000059.813801.018703.950402.92630K562FIP1L1
APOMENSG00000204444.6167.1853096.761300.788803.767002.51300K562HNRNPA1
APOMENSG00000204444.6184.38450104.834200.814503.503202.09500K562HNRNPK
APOMENSG00000204444.6118.1282049.199501.263504.950603.66420K562HNRNPM
APOMENSG00000204444.632.67900107.16810-1.713408.208906.67740K562HNRNPU
APOMENSG00000204444.6107.09350156.92880-0.551202.088201.31400K562MBNL1
APOMENSG00000204444.647.9333098.15610-1.034003.242802.18280K562PCBP2
APOMENSG00000204444.6130.1511064.532601.012004.050302.84910K562RCC2
APOMENSG00000204444.645.8967085.69570-0.900802.224301.49630K562RPS19
APOMENSG00000204444.646.7141083.33990-0.835202.410401.61520K562SF3B4
APOMENSG00000204444.6116.56960179.07950-0.619402.560501.32370K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for APOM is not available on ENCORE database.





3 RBPs can affect the splicing of APOM :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAPOMENSG00000204444.6chr6+316242483162440331620192316203283162500131625075-0.052000.000150.03045excludedHepG2HNRNPA1
SEAPOMENSG00000204444.6chr6+316242483162441031620193316203283162500131625075-0.222000.000040.00842excludedHepG2SSB
A5SSAPOMENSG00000204444.6chr6+316242483162441031624248316244033162500131625075-0.072000.000000.00005shorterHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for APOM is not avaliable on ENCORE database.