CCDC58

General Information

Gene Name       : CCDC58
Gene ID             : ENSG00000160124.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCDC58)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC58ENSG00000160124.9150.50120.02135.26ENCSR000AEF
HepG2CCDC58ENSG00000160124.956.30175.84116.07ENCSR985KAT
K562CCDC58ENSG00000160124.9116.70124.60120.65ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC58 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC58 RNA is bound by 13 proteins.  







eCLIP assay for CCDC58 is not avaliable on ENCORE database.





13 proteins are bound to CCDC58 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3122078611122078683-3'-UTR,intron-Distal,intron-Proximal3.143545.12659HepG2LARP4
chr3122078659122078681-3'-UTR,intron-Distal,intron-Proximal3.698558.41667HepG2DDX55
chr3122078638122078659-3'-UTR,intron-Distal,intron-Proximal3.504267.90679HepG2DDX55
chr3122078610122078642-3'-UTR,intron-Distal,intron-Proximal4.044024.23276K562PABPC4
chr3122078642122078682-3'-UTR,intron-Distal,intron-Proximal4.2082411.02630K562PABPC4
chr3122101930122102077-5'-UTR,CDS,intron-Distal,intron-Proximal3.064004.71346HepG2NCBP2
chr3122101965122102079-5'-UTR,CDS,intron-Distal,intron-Proximal4.8533822.46178HepG2PRPF8
chr3122101970122102067-5'-UTR,CDS,intron-Distal3.073684.91549K562PRPF8
chr3122087125122087195-CDS,intron-Distal,intron-Proximal3.167426.57527HepG2U2AF2
chr3122090576122090648-CDS,intron-Distal,intron-Proximal3.9670810.30883K562DDX3X
chr3122083140122083188-intron-Distal4.749706.36848HepG2SUGP2
chr3122085927122086036-intron-Distal5.2515736.01335HepG2PCBP2
chr3122082407122082488-intron-Distal3.466923.39827HepG2MATR3
chr3122101923122101984-intron-Distal4.566783.61992K562RBM22
chr3122082677122082774-intron-Distal5.246258.41240HepG2SUGP2
chr3122082358122082463-intron-Distal4.5524111.10994HepG2SUGP2
chr3122083192122083252-intron-Distal3.664735.06177HepG2SUGP2
chr3122082684122082756-intron-Distal3.079753.08928HepG2MATR3
chr3122094376122094493-intron-Distal3.042513.86835HepG2QKI
chr3122082994122083044-intron-Distal3.529085.30446HepG2SUGP2
chr3122083521122083571-intron-Distal3.494044.57452HepG2SUGP2
chr3122089365122089451-intron-Distal4.736129.10156HepG2QKI
chr3122082051122082132-intron-Distal3.190054.63410HepG2SUGP2
chr3122101939122101983-intron-Distal4.497734.71325HepG2RBM22
chr3122094259122094334-intron-Distal3.521716.64740HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC58 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC58 is not available on ENCORE database.

  • 115 RBPs can affect the levels of CCDC58.  








The Knockdown/knockout RNA-Seq assay for CCDC58 is not available on ENCORE database.





115 RBPs can affect the gene expression of CCDC58 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC58ENSG00000160124.5436.55090996.19700-1.1903014.4115013.29620HepG2AKAP1
CCDC58ENSG00000160124.5586.96140726.76930-0.308202.477201.82090HepG2AUH
CCDC58ENSG00000160124.5301.03040455.82440-0.598603.056802.11110HepG2BCLAF1
CCDC58ENSG00000160124.5419.80520557.29510-0.408703.661102.91470HepG2CKAP4
CCDC58ENSG00000160124.5767.16630965.26140-0.331403.727602.88840HepG2DAZAP1
CCDC58ENSG00000160124.5415.65390558.23230-0.425502.729802.05560HepG2DDX21
CCDC58ENSG00000160124.5650.73930954.24980-0.552304.319203.55190HepG2DDX3X
CCDC58ENSG00000160124.5409.09250533.34250-0.382602.086801.48600HepG2DKC1
CCDC58ENSG00000160124.5559.89910735.91260-0.394403.466502.68560HepG2DNAJC21
CCDC58ENSG00000160124.5459.12020729.46690-0.6680010.582909.40570HepG2DNAJC2
CCDC58ENSG00000160124.5357.42290788.01470-1.1406013.9939012.72850HepG2EIF2S1
CCDC58ENSG00000160124.5442.77500649.35200-0.552403.606802.58240HepG2EIF3D
CCDC58ENSG00000160124.5576.71420870.81320-0.594504.408803.60570HepG2EIF4A3
CCDC58ENSG00000160124.5553.67760847.92700-0.614903.799002.99800HepG2EIF4B
CCDC58ENSG00000160124.5602.99850834.45960-0.468705.293104.50900HepG2ETF1
CCDC58ENSG00000160124.5558.21410896.75840-0.683905.185504.16050HepG2FIP1L1
CCDC58ENSG00000160124.5516.63200878.72200-0.766307.578206.47660HepG2FXR1
CCDC58ENSG00000160124.5368.57810815.08670-1.1450014.0552012.61690HepG2G3BP1
CCDC58ENSG00000160124.5630.34910865.39320-0.457203.253502.28460HepG2G3BP2
CCDC58ENSG00000160124.5432.92310742.96350-0.779206.076605.17060HepG2HNRNPA1
CCDC58ENSG00000160124.5459.71340826.42700-0.846209.810408.57160HepG2HNRNPC
CCDC58ENSG00000160124.5668.36720803.07080-0.264902.048101.42410HepG2HNRNPF
CCDC58ENSG00000160124.5654.66200825.48170-0.334502.001601.40070HepG2HNRNPK
CCDC58ENSG00000160124.5580.07530879.28170-0.600109.569808.38840HepG2HNRNPL
CCDC58ENSG00000160124.5567.69370820.96180-0.532206.981706.05480HepG2HNRNPU
CCDC58ENSG00000160124.5616.32110790.79730-0.359602.710801.99450HepG2IGF2BP1
CCDC58ENSG00000160124.5542.57750828.49760-0.610704.996404.11340HepG2IGF2BP2
CCDC58ENSG00000160124.5395.27660777.59060-0.976104.132402.93360HepG2IGF2BP3
CCDC58ENSG00000160124.5572.98890833.36480-0.540403.298002.19140HepG2KHSRP
CCDC58ENSG00000160124.5785.179801340.97460-0.772207.096405.75290HepG2LARP4
CCDC58ENSG00000160124.5620.37960879.02920-0.502803.649302.89590HepG2MAGOH
CCDC58ENSG00000160124.5306.40730434.75330-0.504703.148201.42350HepG2MARK2
CCDC58ENSG00000160124.5560.02520725.82340-0.374102.502101.73100HepG2MSI2
CCDC58ENSG00000160124.5367.45540904.73880-1.2999018.1044016.57760HepG2NCBP2
CCDC58ENSG00000160124.5722.99230957.15080-0.404803.946103.03440HepG2NOL12
CCDC58ENSG00000160124.5418.34140805.66330-0.9455010.456709.07410HepG2PABPC4
CCDC58ENSG00000160124.5555.22650812.58980-0.549506.694705.46590HepG2PARN
CCDC58ENSG00000160124.5425.37600771.32160-0.8586014.2824013.07990HepG2PCBP1
CCDC58ENSG00000160124.5376.13870536.98830-0.513603.856502.40090HepG2PKM
CCDC58ENSG00000160124.5523.03180732.22930-0.485404.954103.99700HepG2PPIL4
CCDC58ENSG00000160124.5260.97420397.94110-0.608603.086902.23790HepG2PRPF8
CCDC58ENSG00000160124.5391.10400784.86750-1.0049018.2406017.06910HepG2PTBP1
CCDC58ENSG00000160124.5551.82080913.68190-0.727508.755807.77470HepG2PUF60
CCDC58ENSG00000160124.5581.69590969.91100-0.7376015.1568013.99770HepG2PUM1
CCDC58ENSG00000160124.5605.42320969.20420-0.678908.919907.74940HepG2PUM2
CCDC58ENSG00000160124.5392.53770567.82230-0.532605.536304.72030HepG2PUS1
CCDC58ENSG00000160124.5528.75730849.99050-0.684808.567507.56080HepG2QKI
CCDC58ENSG00000160124.5391.45670733.49450-0.905903.476502.68840HepG2RAVER1
CCDC58ENSG00000160124.5228.44140697.44730-1.6103032.8762031.47920HepG2RBM22
CCDC58ENSG00000160124.5513.03550771.43630-0.588505.709204.77290HepG2RBM25
CCDC58ENSG00000160124.5479.63750873.46640-0.8648014.2333013.18650HepG2NELFE
CCDC58ENSG00000160124.5565.50290813.54380-0.524706.064305.20080HepG2RECQL
CCDC58ENSG00000160124.5340.42950631.79880-0.892108.798907.77640HepG2RPS19
CCDC58ENSG00000160124.5402.04550571.02680-0.506203.410802.52320HepG2RPS2
CCDC58ENSG00000160124.5272.55480393.65690-0.530402.300001.57650HepG2RRP9
CCDC58ENSG00000160124.5546.79860731.09250-0.419004.423103.64200HepG2SAFB2
CCDC58ENSG00000160124.5443.19270634.18650-0.517003.460402.40450HepG2SERBP1
CCDC58ENSG00000160124.5629.11990810.10910-0.364802.393901.73590HepG2SF3B1
CCDC58ENSG00000160124.5521.79110817.11440-0.647108.534207.58460HepG2SF3B4
CCDC58ENSG00000160124.5696.80360876.07300-0.330303.383402.62060HepG2SLBP
CCDC58ENSG00000160124.5459.69230852.56010-0.8911018.8152017.37000HepG2SMN1
CCDC58ENSG00000160124.5521.65330746.91690-0.517902.352201.47690HepG2SMNDC1
CCDC58ENSG00000160124.5707.54800852.90440-0.269602.170301.73750HepG2SRSF1
CCDC58ENSG00000160124.5453.34000902.12460-0.9927020.1518018.67340HepG2SRSF5
CCDC58ENSG00000160124.5560.56040788.98410-0.493105.709604.76700HepG2SRSF7
CCDC58ENSG00000160124.5485.85950693.89510-0.514205.905905.15450HepG2SRSF9
CCDC58ENSG00000160124.5737.312801025.96700-0.476606.651305.76000HepG2SUCLG1
CCDC58ENSG00000160124.5476.42090605.57350-0.346102.381801.50460HepG2SUPT6H
CCDC58ENSG00000160124.5666.80160513.416200.377002.126601.52330HepG2SUPV3L1
CCDC58ENSG00000160124.5570.75870766.66220-0.425703.904303.25660HepG2TAF15
CCDC58ENSG00000160124.5504.28300797.75880-0.661706.245105.21650HepG2TARDBP
CCDC58ENSG00000160124.5520.19710704.41730-0.437403.540702.59930HepG2TIA1
CCDC58ENSG00000160124.5471.56440797.65230-0.758309.915609.07300HepG2TIAL1
CCDC58ENSG00000160124.5504.48530804.85310-0.6739010.363509.37600HepG2TRIM56
CCDC58ENSG00000160124.5625.56430892.62420-0.512904.866003.67370HepG2TUFM
CCDC58ENSG00000160124.5635.70650944.82570-0.571704.245803.19670HepG2UBE2L3
CCDC58ENSG00000160124.5643.44890824.53970-0.357803.601102.82010HepG2UPF1
CCDC58ENSG00000160124.5840.76620657.135100.355402.423101.32470K562AARS
CCDC58ENSG00000160124.51099.652101517.48710-0.464604.358102.79850K562ABCF1
CCDC58ENSG00000160124.5418.77460775.67160-0.889309.616708.62690K562AQR
CCDC58ENSG00000160124.5355.48930525.58500-0.564105.498204.12930K562BCLAF1
CCDC58ENSG00000160124.5457.65400935.09690-1.0309010.509008.75690K562BOP1
CCDC58ENSG00000160124.5772.129501056.99970-0.453103.252201.68530K562BUD13
CCDC58ENSG00000160124.5662.335501001.77990-0.596903.140101.99810K562CNOT7
CCDC58ENSG00000160124.5439.89240994.29360-1.1765022.1147019.86580K562CPSF6
CCDC58ENSG00000160124.5243.73400398.73470-0.710105.603904.01870K562CSTF2
CCDC58ENSG00000160124.5516.48250717.47730-0.474204.937203.29320K562DDX21
CCDC58ENSG00000160124.51599.456901162.267900.460507.532706.52870K562DDX47
CCDC58ENSG00000160124.5505.22890888.52310-0.8145013.4282012.02710K562EIF2S2
CCDC58ENSG00000160124.5537.36530366.903000.550404.659703.63890K562EIF3G
CCDC58ENSG00000160124.5339.95150252.198300.430702.213401.47600K562EIF4A3
CCDC58ENSG00000160124.5496.77700639.44580-0.364202.549301.33930K562EXOSC5
CCDC58ENSG00000160124.5833.706001090.82290-0.387803.035402.14560K562FIP1L1
CCDC58ENSG00000160124.5513.728701011.63670-0.9776013.5546011.60210K562FMR1
CCDC58ENSG00000160124.5435.66680857.43880-0.9768011.620909.61140K562FTO
CCDC58ENSG00000160124.5606.46430262.276201.2092019.8010018.29670K562FXR1
CCDC58ENSG00000160124.5602.11400769.01680-0.353002.933501.75940K562GLRX3
CCDC58ENSG00000160124.5439.68400949.31960-1.1104017.7158015.63510K562GPKOW
CCDC58ENSG00000160124.5434.17700719.00620-0.727707.626006.68170K562HNRNPC
CCDC58ENSG00000160124.5435.99550642.08740-0.558504.491502.99550K562HNRNPF
CCDC58ENSG00000160124.5595.89160373.211800.675002.766501.53200K562HNRNPK
CCDC58ENSG00000160124.51328.03760897.218000.565704.918003.63870K562HNRNPM
CCDC58ENSG00000160124.5262.36720372.46530-0.505502.846301.34070K562KHDRBS1
CCDC58ENSG00000160124.5444.91660810.56420-0.865407.099705.53300K562KRR1
CCDC58ENSG00000160124.5555.55870392.630100.500702.813501.96610K562MAGOH
CCDC58ENSG00000160124.5569.76570926.63600-0.701608.143706.59160K562METAP2
CCDC58ENSG00000160124.5553.42180808.51480-0.546906.927105.69390K562MTPAP
CCDC58ENSG00000160124.5497.77450898.36640-0.8518018.2683016.57880K562NSUN2
CCDC58ENSG00000160124.5664.70410962.41910-0.534002.884401.62160K562PABPC1
CCDC58ENSG00000160124.5537.99130813.37090-0.596304.726103.64180K562PCBP3
CCDC58ENSG00000160124.5407.33600623.86710-0.615005.642904.50090K562POLR2G
CCDC58ENSG00000160124.5546.64580389.197900.490003.215302.40600K562PRPF8
CCDC58ENSG00000160124.5460.92120644.66830-0.484003.583002.53550K562PSIP1
CCDC58ENSG00000160124.5309.38000497.77630-0.686105.355304.63140K562PUS1
CCDC58ENSG00000160124.5442.51380588.19490-0.410602.911001.89410K562RCC2
CCDC58ENSG00000160124.5536.12910396.539500.435002.465501.69560K562RPS19
CCDC58ENSG00000160124.5430.53280296.855500.536302.664301.68280K562RPS3
CCDC58ENSG00000160124.5648.14080886.40800-0.451705.012603.94050K562SF3A3
CCDC58ENSG00000160124.5539.68050902.78620-0.742306.713705.16000K562SF3B1
CCDC58ENSG00000160124.5387.61590557.59110-0.524603.567102.36200K562SRFBP1
CCDC58ENSG00000160124.5741.60590908.13960-0.292302.793101.85390K562SRPK2
CCDC58ENSG00000160124.5466.62460640.34970-0.456603.439602.12340K562SRSF7
CCDC58ENSG00000160124.5994.393001309.04230-0.396602.895301.61200K562STAU1
CCDC58ENSG00000160124.5484.26810893.11600-0.883004.353602.29970K562STIP1
CCDC58ENSG00000160124.5976.39920625.777300.641704.259303.23380K562SYNCRIP
CCDC58ENSG00000160124.5242.03660378.49110-0.645002.108801.48520K562TARDBP
CCDC58ENSG00000160124.5252.44320365.07800-0.532201.993901.30620K562TIA1
CCDC58ENSG00000160124.5429.86740620.06080-0.528503.468002.41430K562TIAL1
CCDC58ENSG00000160124.5415.13660658.75520-0.666206.127504.59310K562TRIM56
CCDC58ENSG00000160124.5836.496501276.03710-0.609206.491604.21980K562TRIP6
CCDC58ENSG00000160124.5461.02910952.55430-1.0469024.5370022.65440K562UPF1
CCDC58ENSG00000160124.5447.72000815.07500-0.8643011.9130010.04890K562WDR3
CCDC58ENSG00000160124.5709.61980438.969700.692803.349401.56720K562XRCC6
CCDC58ENSG00000160124.5455.81910873.91470-0.939008.546506.90480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC58 is not available on ENCORE database.





20 RBPs can affect the splicing of CCDC58 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC58ENSG00000160124.5chr3-122087022122087169122081814122081874122090521122090647-0.065000.000110.00326excludedK562SF3B4
SECCDC58ENSG00000160124.5chr3-122087022122087204122081814122081874122090521122090647-0.109000.000000.00001excludedHepG2U2AF2
SECCDC58ENSG00000160124.5chr3-122090521122090647122081814122081874122102020122102078-0.141000.000460.00893excludedK562PUS1
SECCDC58ENSG00000160124.5chr3-122081814122081927122078708122078766122087022122087169-0.079000.002130.05521excludedHepG2SF3A3
SECCDC58ENSG00000160124.5chr3-122087022122087169122081814122081874122102020122102078-0.129000.002110.05955excludedK562UTP18
SECCDC58ENSG00000160124.5chr3-122087022122087169122081814122081874122090521122090647-0.066000.000140.00375excludedK562U2AF2
SECCDC58ENSG00000160124.5chr3-122090521122090647122087022122087169122102020122102078-0.071000.000160.00910excludedK562TARDBP
SECCDC58ENSG00000160124.5chr3-122090521122090647122081814122081874122102020122102078-0.125000.000140.00562excludedK562RBM15
A3SSCCDC58ENSG00000160124.5chr3-1220870221220872041220870221220871691220905211220906470.058000.000000.00001longerK562AQR
MXECCDC58ENSG00000160124.5chr3-122087022122087169122090521122090647122081814122081874122102020122102078-0.160000.001540.028262includedK562PUS1
MXECCDC58ENSG00000160124.5chr3-122081814122081874122087022122087169122078634122078766122090521122090647-0.106000.006980.088272includedK562PUS1
MXECCDC58ENSG00000160124.5chr3-122081814122081874122090521122090647122078437122078766122102020122102078-0.228000.000070.002252includedK562PUS1
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.200000.000000.000101includedK562LIN28B
MXECCDC58ENSG00000160124.5chr3-1220818141220818741220870221220872041220786341220787661220905211220906470.060000.000460.004591includedK562AQR
MXECCDC58ENSG00000160124.5chr3-122081814122081874122087022122087169122078634122078766122090521122090647-0.144000.001270.019032includedK562U2AF2
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.129000.001500.070301includedK562LARP7
MXECCDC58ENSG00000160124.5chr3-1220818141220818741220870221220871691220786341220787661220905211220906470.111000.001540.043841includedHepG2XRN2
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.111000.002770.063041includedHepG2XRN2
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.114000.003150.061421includedHepG2DDX55
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.201000.000000.000011includedHepG2U2AF2
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.167000.000030.004291includedK562PHF6
MXECCDC58ENSG00000160124.5chr3-122087022122087169122090521122090647122081814122081874122102020122102078-0.174000.000040.023372includedHepG2TRA2A
MXECCDC58ENSG00000160124.5chr3-1220818141220818741220905211220906471220784371220787661221020201221020780.126000.000710.028841includedHepG2SUPV3L1
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.175000.000000.000241includedHepG2SUPV3L1
MXECCDC58ENSG00000160124.5chr3-122087022122087169122090521122090647122081814122081874122102020122102078-0.161000.000100.022752includedHepG2XRCC6
MXECCDC58ENSG00000160124.5chr3-1220870221220871691220905211220906471220818141220818741221020201221020780.131000.000380.027561includedHepG2DDX6
MXECCDC58ENSG00000160124.5chr3-1220818141220818741220870221220871691220786341220787661220905211220906470.132000.000040.003291includedHepG2TIAL1
MXECCDC58ENSG00000160124.5chr3-122087022122087169122090521122090647122081814122081874122102020122102078-0.169000.000050.012502includedHepG2SUB1
MXECCDC58ENSG00000160124.5chr3-122087022122087169122090521122090647122081814122081874122102020122102078-0.159000.000180.024672includedHepG2PCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC58 is not avaliable on ENCORE database.