CHMP1A

General Information

Gene Name       : CHMP1A
Gene ID             : ENSG00000131165.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHMP1A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHMP1AENSG00000131165.147.7524.6116.18ENCSR000AEF
HepG2CHMP1AENSG00000131165.14105.3151.4778.39ENCSR985KAT
K562CHMP1AENSG00000131165.1440.1727.5433.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHMP1A is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHMP1A RNA is bound by 27 proteins.  







eCLIP assay for CHMP1A is not avaliable on ENCORE database.





27 proteins are bound to CHMP1A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr168971225189712308-3'-UTR,intron-Distal,intron-Proximal4.223186.31568HepG2LARP4
chr168971136789711400-3'-UTR,intron-Distal5.9387514.04767K562UPF1
chr168971308689713187-3'-UTR,CDS,intron-Distal,intron-Proximal3.659485.44908K562SF3B4
chr168971172889711799-3'-UTR,intron-Distal4.7466921.98313K562UPF1
chr168971167189711745-3'-UTR,intron-Distal5.4049721.45701HepG2UPF1
chr168971120489711306-3'-UTR,intron-Distal6.7366929.83677HepG2AKAP1
chr168971576389715836-3'-UTR,CDS,intron-Distal,intron-Proximal3.198834.09398HepG2GRWD1
chr168971094589711004-3'-UTR,intron-Distal5.3263117.33080K562UPF1
chr168971183189711939-3'-UTR,intron-Distal5.8302825.25027HepG2UPF1
chr168971200189712037-3'-UTR,intron-Distal3.763028.27984K562UPF1
chr168971226089712316-3'-UTR,intron-Distal,intron-Proximal4.2729111.29390HepG2AKAP1
chr168971218089712308-3'-UTR,intron-Distal,intron-Proximal6.1140174.80001HepG2UPF1
chr168971582589715838-3'-UTR,CDS,intron-Distal3.349047.24294K562YBX3
chr168971112389711180-3'-UTR,intron-Distal5.5644422.14708K562UPF1
chr168971579089715825-3'-UTR,CDS,intron-Distal4.233709.65448K562YBX3
chr168971175189711806-3'-UTR,intron-Distal5.9220015.66923HepG2UPF1
chr168971216889712296-3'-UTR,intron-Distal,intron-Proximal3.5540913.36224HepG2DDX55
chr168971123689711305-3'-UTR,intron-Distal6.2980852.08629K562UPF1
chr168971213289712254-3'-UTR,intron-Distal,intron-Proximal4.1452931.41491K562UPF1
chr168971106289711101-3'-UTR,intron-Distal4.4840110.56484HepG2UPF1
chr168971171289711916-3'-UTR,intron-Distal3.195444.40828HepG2IGF2BP3
chr168971094289711057-3'-UTR,intron-Distal4.297548.50867K562PABPC4
chr168971205689712180-3'-UTR,intron-Distal,intron-Proximal6.9659736.44815HepG2UPF1
chr168971130589711355-3'-UTR,intron-Distal5.9138523.76045K562UPF1
chr168971104489711105-3'-UTR,intron-Distal4.9240918.65988K562UPF1
chr168971120589711313-3'-UTR,intron-Distal4.8657333.20595HepG2UPF1
chr168971181989711844-3'-UTR,intron-Distal4.608388.27548K562UPF1
chr168971119289711245-3'-UTR,intron-Distal4.088385.53017K562AKAP1
chr168971139589711425-3'-UTR,intron-Distal5.188188.19969HepG2UPF1
chr168971167089711723-3'-UTR,intron-Distal5.2221916.53238K562UPF1
chr168971084989710942-3'-UTR,intron-Distal,intron-Proximal4.9772812.31980K562PUM2
chr168971234589712400-3'-UTR,CDS,intron-Distal,intron-Proximal3.779108.80496HepG2UPF1
chr168971310689713141-3'-UTR,CDS,intron-Distal,intron-Proximal3.933095.89850HepG2AQR
chr168971213989712260-3'-UTR,intron-Distal,intron-Proximal5.7340242.85872HepG2AKAP1
chr168971119489711236-3'-UTR,intron-Distal4.3371414.94065K562UPF1
chr168971225589712312-3'-UTR,intron-Distal,intron-Proximal3.283483.70435HepG2LIN28B
chr168971124589711309-3'-UTR,intron-Distal3.731386.97411K562AKAP1
chr168971103789711105-3'-UTR,intron-Distal4.8165414.38178HepG2AKAP1
chr168971104289711090-3'-UTR,intron-Distal4.622293.78860K562AKAP1
chr168971184789711931-3'-UTR,intron-Distal3.740984.30970K562IGF2BP2
chr168971218789712294-3'-UTR,intron-Distal,intron-Proximal3.088164.55362HepG2NKRF
chr168971094689710997-3'-UTR,intron-Distal5.7508014.63716HepG2UPF1
chr168971171789711797-3'-UTR,intron-Distal6.2543718.08639HepG2AKAP1
chr168971225489712293-3'-UTR,intron-Distal,intron-Proximal4.6668514.74404K562UPF1
chr168971225689712305-3'-UTR,intron-Distal,intron-Proximal3.497195.88228K562TIA1
chr168971206889712120-3'-UTR,intron-Distal3.812018.17514HepG2AKAP1
chr168971309589713165-3'-UTR,CDS,intron-Distal,intron-Proximal3.505358.17562K562AQR
chr168971234989712394-3'-UTR,CDS,intron-Distal,intron-Proximal4.326889.01045HepG2AKAP1
chr168971183489711930-3'-UTR,intron-Distal5.5247517.45285HepG2AKAP1
chr168971162889711658-3'-UTR,intron-Distal5.6614612.02344K562UPF1
chr168972404289724111-5'-UTR,intron-Distal,intron-Proximal3.513635.11648K562DDX3X
chr168971798989718099-5'-UTR,CDS,intron-Distal,intron-Proximal4.6262611.21499HepG2AQR
chr168972398789724098-5'-UTR,CDS,intron-Distal,intron-Proximal4.529275.84843HepG2DDX3X
chr168972398689724017-5'-UTR,CDS,intron-Distal,intron-Proximal3.268754.51003HepG2PPIG
chr168971799189718055-5'-UTR,CDS,intron-Distal,intron-Proximal3.461767.23254K562DDX3X
chr168972398889724036-5'-UTR,CDS,intron-Distal,intron-Proximal3.965817.98234K562DDX3X
chr168972391489723995-5'-UTR,CDS,intron-Distal5.478058.16909HepG2AQR
chr168971351889713573-CDS,intron-Distal,intron-Proximal5.302759.50259HepG2EFTUD2
chr168972026489720323-CDS,intron-Distal,intron-Proximal5.123635.69951K562AQR
chr168972026789720348-CDS,intron-Distal,intron-Proximal3.328195.71175HepG2BUD13
chr168971350389713601-CDS,intron-Distal,intron-Proximal3.9890517.09988HepG2PRPF8
chr168971351889713606-CDS,intron-Distal,intron-Proximal4.855934.97857HepG2AQR
chr168971571189715760-CDS,intron-Distal,intron-Proximal4.233478.31500HepG2PRPF8
chr168972028689720354-CDS,intron-Distal,intron-Proximal3.840247.50982HepG2AQR
chr168971350489713583-CDS,intron-Distal,intron-Proximal3.729048.09841HepG2BUD13
chr168971350889713602-CDS,intron-Distal,intron-Proximal4.594196.32182HepG2PRPF4
chr168972028889720382-CDS,intron-Distal,intron-Proximal4.063165.63851K562SF3B4
chr168971351489713615-CDS,intron-Distal,intron-Proximal4.7845917.69855K562AQR
chr168971318789713221-intron-Distal,intron-Proximal3.834435.34865HepG2EFTUD2
chr168971552689715589-intron-Distal,intron-Proximal3.994744.10323HepG2PRPF4
chr168972027089720302-intron-Distal,intron-Proximal4.057323.56873HepG2PRPF8
chr168972376089723811-intron-Distal5.309456.65725HepG2DDX59
chr168972352389723626-intron-Distal4.850616.39924HepG2HNRNPK
chr168972376789723805-intron-Distal4.698963.75440HepG2XRN2
chr168972345989723516-intron-Distal5.4314115.36621HepG2DDX59
chr168971380489713880-intron-Distal,intron-Proximal3.941837.03491K562RBM15
chr168971323089713284-intron-Distal,intron-Proximal3.590124.68902HepG2PPIG
chr168971914989719328-intron-Distal3.168003.80158K562NONO
chr168971831989718366-intron-Distal6.4561516.92618HepG2XPO5
chr168972368089723739-intron-Distal3.857773.34601K562HNRNPK
chr168972333389723540-intron-Distal4.746586.20726K562HNRNPK
chr168972368489723746-intron-Distal4.2432210.23933HepG2DDX59
chr168971314189713211-intron-Distal,intron-Proximal4.502799.68645HepG2AQR
chr168971326389713297-intron-Distal,intron-Proximal6.024859.77790HepG2EFTUD2
chr168972362689723750-intron-Distal4.4748410.41145HepG2HNRNPK
chr168972335989723459-intron-Distal5.2285720.14079HepG2DDX59
chr168972361489723678-intron-Distal5.0217011.49570HepG2DDX59
chr168971324689713299-intron-Distal,intron-Proximal4.173473.48722HepG2PRPF4
chr168972339789723523-intron-Distal3.713138.56237HepG2HNRNPK
chr168972375089723811-intron-Distal3.550415.09513HepG2HNRNPK
chr168972352289723578-intron-Distal4.2224311.29625HepG2DDX59
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHMP1A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHMP1A is not available on ENCORE database.

  • 97 RBPs can affect the levels of CHMP1A.  








The Knockdown/knockout RNA-Seq assay for CHMP1A is not available on ENCORE database.





97 RBPs can affect the gene expression of CHMP1A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHMP1AENSG00000131165.102322.519701852.231200.326302.240501.38910HepG2ABCF1
CHMP1AENSG00000131165.102183.509401712.730200.350306.117905.28570HepG2ACO1
CHMP1AENSG00000131165.103346.208102351.878400.508604.319103.67520HepG2AKAP1
CHMP1AENSG00000131165.102006.352101720.611700.221602.385201.66720HepG2AKAP8L
CHMP1AENSG00000131165.103028.181802390.495000.341005.963405.01730HepG2AUH
CHMP1AENSG00000131165.101807.526001198.764200.592407.236006.32170HepG2BOP1
CHMP1AENSG00000131165.10758.385001012.11880-0.416402.835502.05490HepG2CALR
CHMP1AENSG00000131165.102918.917801848.724700.658808.458207.16400HepG2CIRBP
CHMP1AENSG00000131165.102068.935101712.159200.273004.203303.41620HepG2CKAP4
CHMP1AENSG00000131165.101643.418701017.715400.691304.680503.68100HepG2CNOT7
CHMP1AENSG00000131165.10864.545801100.48870-0.348102.347601.70730HepG2CPSF6
CHMP1AENSG00000131165.101239.929401525.11000-0.298702.508001.45700HepG2CPSF7
CHMP1AENSG00000131165.101924.471201439.248900.419006.612605.70040HepG2CELF1
CHMP1AENSG00000131165.101986.089001583.938600.326305.454504.33630HepG2DDX19B
CHMP1AENSG00000131165.103455.873002252.606200.617405.438804.58810HepG2DDX3X
CHMP1AENSG00000131165.102576.662601935.778100.412502.554601.96040HepG2DDX6
CHMP1AENSG00000131165.101190.14910952.670400.321003.251002.49340HepG2DNAJC21
CHMP1AENSG00000131165.101415.23110944.309200.5836013.1742011.85770HepG2DNAJC2
CHMP1AENSG00000131165.102982.330102055.353500.537002.683502.05420HepG2EIF4A3
CHMP1AENSG00000131165.101466.519702001.85570-0.448902.185301.57130HepG2EIF4B
CHMP1AENSG00000131165.102413.060602744.69160-0.185802.232401.68270HepG2ETF1
CHMP1AENSG00000131165.102472.657901673.466900.563108.309106.87220HepG2EWSR1
CHMP1AENSG00000131165.101170.917601596.17480-0.447004.765203.74910HepG2FUBP3
CHMP1AENSG00000131165.102634.725502074.844600.344502.517101.85570HepG2FXR1
CHMP1AENSG00000131165.10522.295301046.97300-1.003302.823401.43830HepG2HLTF
CHMP1AENSG00000131165.101364.44430961.797800.504403.672102.94220HepG2HNRNPA1
CHMP1AENSG00000131165.101129.804801422.20750-0.332103.596202.55290HepG2HNRNPA2B1
CHMP1AENSG00000131165.101936.751701574.986500.298203.752302.92780HepG2HNRNPF
CHMP1AENSG00000131165.101603.575601409.608100.185902.123101.52300HepG2HNRNPL
CHMP1AENSG00000131165.101377.665701062.764800.374305.273604.45720HepG2HNRNPU
CHMP1AENSG00000131165.101850.516201550.908300.254702.162901.51780HepG2IGF2BP1
CHMP1AENSG00000131165.102338.334101766.210900.404702.613201.80730HepG2LARP4
CHMP1AENSG00000131165.102653.628302075.573800.354401.858501.31640HepG2MAGOH
CHMP1AENSG00000131165.102716.014602087.015000.380002.472901.87330HepG2MATR3
CHMP1AENSG00000131165.102629.909302136.033200.300001.923401.39000HepG2NCBP2
CHMP1AENSG00000131165.102357.329901534.475500.619305.836804.73320HepG2NOL12
CHMP1AENSG00000131165.101107.65810726.044900.609303.643201.99470HepG2NOLC1
CHMP1AENSG00000131165.101281.23530947.898300.434605.405904.40570HepG2PPIL4
CHMP1AENSG00000131165.102374.000901464.811200.6965011.7277010.61700HepG2PUF60
CHMP1AENSG00000131165.102135.659501554.985100.4577011.3450010.31470HepG2PUM1
CHMP1AENSG00000131165.102183.551301553.834800.490702.599701.94900HepG2PUM2
CHMP1AENSG00000131165.102226.442601744.497700.351806.191905.33630HepG2PUS1
CHMP1AENSG00000131165.101537.096501986.61510-0.370103.810803.02860HepG2RBM25
CHMP1AENSG00000131165.101564.443501068.005000.550604.483403.12980HepG2RCC2
CHMP1AENSG00000131165.102638.328802249.352800.230002.716602.17950HepG2NELFE
CHMP1AENSG00000131165.101303.85450922.973200.498303.102202.45590HepG2RPS19
CHMP1AENSG00000131165.101750.012201212.868000.528803.688102.76800HepG2RPS2
CHMP1AENSG00000131165.101618.803901238.176500.386602.421801.42070HepG2RPS5
CHMP1AENSG00000131165.101184.76690946.429000.323903.952303.20540HepG2SAFB2
CHMP1AENSG00000131165.102735.099101712.465800.675406.111705.08700HepG2SF3A3
CHMP1AENSG00000131165.101595.458501178.196800.437304.008703.17470HepG2SF3B1
CHMP1AENSG00000131165.101771.952001404.573600.335104.760103.87860HepG2SLBP
CHMP1AENSG00000131165.101672.845201103.679300.5999015.5302014.19530HepG2SMN1
CHMP1AENSG00000131165.101889.635101017.464300.893007.715606.07220HepG2SMNDC1
CHMP1AENSG00000131165.103403.001202590.999500.393208.539207.79140HepG2SRFBP1
CHMP1AENSG00000131165.101815.479602196.41020-0.274803.688503.16210HepG2SRSF1
CHMP1AENSG00000131165.102232.229001446.315700.6260015.8211014.49610HepG2SRSF5
CHMP1AENSG00000131165.101781.208201547.385200.202901.924001.33260HepG2SRSF7
CHMP1AENSG00000131165.101501.483801786.91060-0.251103.061202.48630HepG2SRSF9
CHMP1AENSG00000131165.102107.280301644.835400.357306.484405.60260HepG2SUCLG1
CHMP1AENSG00000131165.101551.701201262.695400.297202.364701.49080HepG2SUPT6H
CHMP1AENSG00000131165.10880.145301974.26410-1.1655037.0527035.30060HepG2TAF15
CHMP1AENSG00000131165.101268.118201814.03200-0.516504.816703.72370HepG2TIA1
CHMP1AENSG00000131165.101702.630201032.610800.7214013.2473012.29200HepG2TIAL1
CHMP1AENSG00000131165.101455.677201041.910100.482408.285707.39300HepG2TRIM56
CHMP1AENSG00000131165.101988.670901431.096700.474606.066204.70540HepG2TUFM
CHMP1AENSG00000131165.102074.238101599.756400.374603.101202.43800HepG2U2AF1
CHMP1AENSG00000131165.102393.434401514.818400.659802.855902.00740HepG2UBE2L3
CHMP1AENSG00000131165.101871.162801518.693800.301004.234803.40070HepG2UPF1
CHMP1AENSG00000131165.101956.341801466.241700.415907.277906.38290HepG2UTP3
CHMP1AENSG00000131165.101282.859701116.898700.199801.956801.37700HepG2ZC3H8
CHMP1AENSG00000131165.102124.649001670.274700.347006.820106.06100HepG2ZNF622
CHMP1AENSG00000131165.101126.24480940.554900.259802.233301.71440K562AGGF1
CHMP1AENSG00000131165.102248.160101668.845500.429803.759403.09640K562AQR
CHMP1AENSG00000131165.101049.06560681.250400.622702.811601.51980K562EEF2
CHMP1AENSG00000131165.101060.19250658.051900.688006.106904.70740K562EFTUD2
CHMP1AENSG00000131165.101011.83330704.287900.522602.548101.55930K562EIF3D
CHMP1AENSG00000131165.10623.58320438.940500.506504.321003.33760K562EIF3G
CHMP1AENSG00000131165.101048.01400704.620400.572605.983004.78530K562EIF4A3
CHMP1AENSG00000131165.10330.51430469.59240-0.506703.293501.53690K562FASTKD2
CHMP1AENSG00000131165.101137.36990770.821800.561105.883404.61330K562FIP1L1
CHMP1AENSG00000131165.10309.14680632.61320-1.0330010.967608.55940K562FKBP4
CHMP1AENSG00000131165.101313.64350732.773400.8420017.7528016.32920K562FXR1
CHMP1AENSG00000131165.1046.71910226.20430-2.2755018.2983016.03230K562G3BP2
CHMP1AENSG00000131165.10956.97740634.071500.593702.963901.99750K562HNRNPM
CHMP1AENSG00000131165.101017.85950547.371100.8948013.8151011.81290K562MAGOH
CHMP1AENSG00000131165.10881.11060546.198100.689804.249403.08500K562MATR3
CHMP1AENSG00000131165.10702.25660486.949600.528102.750701.77320K562PCBP2
CHMP1AENSG00000131165.101376.22250875.121100.653107.864206.32560K562PPIG
CHMP1AENSG00000131165.101206.44690640.367600.913708.782107.44360K562PRPF8
CHMP1AENSG00000131165.10990.82110531.836100.8975014.6882013.21930K562PTBP1
CHMP1AENSG00000131165.101693.140302019.73400-0.254502.421301.42780K562PUM1
CHMP1AENSG00000131165.10903.00630509.742400.8249010.533308.73390K562RBM22
CHMP1AENSG00000131165.10735.35840497.073700.564904.282702.42630K562RBM34
CHMP1AENSG00000131165.10749.23460595.887400.330302.272001.37780K562RCC2
CHMP1AENSG00000131165.10721.74080536.474900.427902.909701.78350K562NELFE
CHMP1AENSG00000131165.10946.41350652.078700.537303.561602.63260K562RPS19
CHMP1AENSG00000131165.10540.51560358.534200.592102.383001.46250K562RPS3
CHMP1AENSG00000131165.10368.89690235.198600.649204.984003.82070K562SF3B4
CHMP1AENSG00000131165.10241.25180403.06470-0.740505.856603.31680K562SND1
CHMP1AENSG00000131165.10750.45420564.870200.409702.774701.74870K562SRFBP1
CHMP1AENSG00000131165.10912.71920521.422900.807605.384804.40510K562SRSF1
CHMP1AENSG00000131165.10497.10040346.087000.522303.409602.22560K562SRSF4
CHMP1AENSG00000131165.10748.09320492.559100.602803.812202.54240K562SRSF5
CHMP1AENSG00000131165.10317.43190452.76700-0.512303.200701.80240K562SSB
CHMP1AENSG00000131165.1084.29950222.04510-1.397307.094604.28550K562TAF15
CHMP1AENSG00000131165.101244.56220527.614401.238007.606206.36770K562TARDBP
CHMP1AENSG00000131165.10901.21340508.969800.824207.718906.24780K562TIA1
CHMP1AENSG00000131165.10780.96620499.686600.644106.169504.38330K562TRA2A
CHMP1AENSG00000131165.10133.65470226.44230-0.760604.437403.42520K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHMP1A is not available on ENCORE database.





2 RBPs can affect the splicing of CHMP1A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCHMP1AENSG00000131165.10chr16-8971578589715960897157858971590589717976897180540.082000.000430.06627longerK562RBM22
A3SSCHMP1AENSG00000131165.10chr16-8971578589715960897157858971590589717976897180540.060000.000000.00000longerHepG2RBM22
A3SSCHMP1AENSG00000131165.10chr16-8971236289712592897123628971249589712934897131410.085000.000000.00002longerK562AQR
A3SSCHMP1AENSG00000131165.10chr16-8971293489713182897129348971312289713610897137390.203000.000000.00000longerK562AQR
A3SSCHMP1AENSG00000131165.10chr16-8971578589715960897157858971590589717976897180540.191000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHMP1A is not avaliable on ENCORE database.