CCNC

General Information

Gene Name       : CCNC
Gene ID             : ENSG00000112237.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CCNC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCNCENSG00000112237.1272.2067.4169.81ENCSR000AEF
HepG2CCNCENSG00000112237.1235.7977.3256.55ENCSR985KAT
K562CCNCENSG00000112237.1258.5661.6960.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCNC is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCNC RNA is bound by 14 proteins.  







eCLIP assay for CCNC is not avaliable on ENCORE database.





14 proteins are bound to CCNC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr69999082899990890-3'-UTR,intron-Distal3.906953.95400K562UPF1
chr69999127699991340-3'-UTR,intron-Distal,intron-Proximal7.6532233.18371K562PABPC4
chr69999426599994358-3'-UTR,CDS,intron-Distal,intron-Proximal3.647443.93645HepG2PPIG
chr69999816199998186-3'-UTR,CDS,intron-Distal,intron-Proximal3.019565.80718K562YBX3
chr69999971099999791-3'-UTR,CDS,intron-Distal,intron-Proximal3.164345.58362HepG2U2AF2
chr69999031699990393-3'-UTR,intron-Distal,intron-Proximal3.425214.75109K562UPF1
chr69999427699994365-3'-UTR,CDS,intron-Distal,intron-Proximal3.435817.71325K562PUM2
chr69999426499994314-3'-UTR,CDS,intron-Distal,intron-Proximal3.665304.46864HepG2BCLAF1
chr69999431499994351-3'-UTR,CDS,intron-Distal,intron-Proximal3.480333.57857HepG2BCLAF1
chr6100009469100009550-5'-UTR,CDS,intron-Distal,intron-Proximal3.044424.89002HepG2BCLAF1
chr6100009287100009373-5'-UTR,CDS,intron-Distal,intron-Proximal4.824683.91589K562SF3B4
chr6100016427100016515-5'-UTR,intron-Distal,intron-Proximal3.165228.12394K562DDX3X
chr6100009522100009570-5'-UTR,CDS,intron-Distal,intron-Proximal3.859094.77518HepG2U2AF2
chr6100016375100016427-5'-UTR,CDS,intron-Distal3.304585.85428K562DDX3X
chr69999757199997621-intron-Distal,intron-Proximal5.6130012.71898K562KHSRP
chr69999756799997654-intron-Distal,intron-Proximal5.5127911.46760HepG2KHSRP
chr6100015933100016005-intron-Distal3.730123.66782HepG2HNRNPM
chr69999829899998367-intron-Distal,intron-Proximal3.327013.81210HepG2KHSRP
chr69999763999997671-intron-Distal4.365208.34041K562KHSRP
chr6100009033100009090-intron-Distal4.177683.45317HepG2HNRNPL
chr6100000311100000356-intron-Distal5.7273814.00192HepG2QKI
chr6100000356100000414-intron-Distal4.8899313.22117HepG2QKI
chr6100009342100009463-intron-Distal,intron-Proximal3.753858.05068K562KHSRP
chr6100009688100009767-intron-Distal,intron-Proximal4.056723.22073HepG2KHSRP
chr69999762199997639-intron-Distal,intron-Proximal4.525819.40001K562KHSRP
chr6100000319100000459-intron-Distal4.4996910.17421K562QKI
chr69999841299998499-intron-Distal,intron-Proximal5.315505.81375HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCNC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCNC is not available on ENCORE database.

  • 88 RBPs can affect the levels of CCNC.  








The Knockdown/knockout RNA-Seq assay for CCNC is not available on ENCORE database.





88 RBPs can affect the gene expression of CCNC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCNCENSG00000112237.82544.482002196.014500.212402.355301.71240HepG2AUH
CCNCENSG00000112237.81011.105201359.00500-0.426602.163201.36590HepG2BCLAF1
CCNCENSG00000112237.81785.119301389.996200.360803.765102.88550HepG2CALR
CCNCENSG00000112237.8655.046002070.85690-1.6606010.141408.29610HepG2CCAR1
CCNCENSG00000112237.81595.860702072.04650-0.376702.948502.15130HepG2CIRBP
CCNCENSG00000112237.81491.509701110.363400.425603.623802.84750HepG2CPSF6
CCNCENSG00000112237.8523.04520966.20580-0.885407.125905.51270HepG2CSTF2
CCNCENSG00000112237.83190.394002525.032600.337302.541601.94050HepG2DDX3X
CCNCENSG00000112237.8889.235801309.54830-0.558404.908704.07950HepG2DNAJC2
CCNCENSG00000112237.8850.256601157.40120-0.444903.302402.30210HepG2EEF2
CCNCENSG00000112237.81393.533702085.17550-0.581405.129804.33680HepG2EIF2S1
CCNCENSG00000112237.82190.259502521.26760-0.203002.019701.48810HepG2ETF1
CCNCENSG00000112237.81061.201301549.87020-0.546404.322403.37680HepG2FIP1L1
CCNCENSG00000112237.81536.369402324.69230-0.597506.610405.56800HepG2FXR1
CCNCENSG00000112237.8596.961501334.09210-1.1601014.2414012.95770HepG2HNRNPA1
CCNCENSG00000112237.81100.632601386.75280-0.333403.809202.97990HepG2HNRNPF
CCNCENSG00000112237.81719.855102183.31640-0.344202.825502.11870HepG2HNRNPK
CCNCENSG00000112237.8535.053801201.17310-1.1667018.3599016.95050HepG2HNRNPLL
CCNCENSG00000112237.8903.303101474.05340-0.706507.108106.17180HepG2HNRNPU
CCNCENSG00000112237.81026.671601365.56320-0.411504.281303.39740HepG2IGF2BP1
CCNCENSG00000112237.81178.562801505.70910-0.353402.637701.92020HepG2ILF2
CCNCENSG00000112237.8919.050201267.90990-0.464208.156406.47600HepG2KIF1C
CCNCENSG00000112237.8832.742302185.19010-1.391808.821507.33240HepG2LARP4
CCNCENSG00000112237.81809.548302338.59410-0.370002.516601.91220HepG2MATR3
CCNCENSG00000112237.81901.792302393.74340-0.331902.222401.65230HepG2NCBP2
CCNCENSG00000112237.81362.284902242.74870-0.7192010.510709.05480HepG2NOL12
CCNCENSG00000112237.8840.737701411.33010-0.747303.740102.45360HepG2NONO
CCNCENSG00000112237.81832.693301312.912300.481102.319401.52050HepG2PABPC1
CCNCENSG00000112237.81008.972402132.07130-1.0794015.8749014.20270HepG2PABPC4
CCNCENSG00000112237.81053.555801459.15100-0.469903.720702.75560HepG2PARN
CCNCENSG00000112237.81504.400302026.54190-0.429807.788406.85240HepG2PCBP1
CCNCENSG00000112237.8482.615701186.52060-1.2978012.0549010.53720HepG2PRPF8
CCNCENSG00000112237.81628.354402062.01800-0.340604.887204.20370HepG2PTBP1
CCNCENSG00000112237.81491.441002272.43180-0.6075015.6296014.45660HepG2PUM1
CCNCENSG00000112237.81688.981402270.84620-0.427106.124105.13930HepG2PUM2
CCNCENSG00000112237.81413.733702233.35320-0.6597013.3421012.11940HepG2QKI
CCNCENSG00000112237.81032.429601420.46680-0.460302.038801.42490HepG2RAVER1
CCNCENSG00000112237.8925.654701325.18520-0.517603.410502.23140HepG2RCC2
CCNCENSG00000112237.81761.434602294.88140-0.381706.321105.55830HepG2NELFE
CCNCENSG00000112237.81606.038702137.27330-0.412307.319006.38770HepG2RECQL
CCNCENSG00000112237.8944.644401493.75890-0.661108.452307.35870HepG2RPLP0
CCNCENSG00000112237.81023.476601395.43250-0.447202.339701.47060HepG2RPS10
CCNCENSG00000112237.8718.27040914.22890-0.348002.537901.94700HepG2RPS19
CCNCENSG00000112237.81744.636401312.752400.410203.604702.88650HepG2SAFB2
CCNCENSG00000112237.81779.240902052.44580-0.206102.911702.19320HepG2SLBP
CCNCENSG00000112237.81243.364601530.96290-0.300201.929501.37640HepG2SMN1
CCNCENSG00000112237.8917.974401382.61840-0.590904.390302.34670HepG2SND1
CCNCENSG00000112237.83424.594102380.163400.5248015.5537014.61910HepG2SRFBP1
CCNCENSG00000112237.83036.712302240.895600.438306.199705.56160HepG2SRSF1
CCNCENSG00000112237.8654.513001279.30020-0.9669010.578708.52180HepG2SRSF3
CCNCENSG00000112237.82056.378702403.84850-0.225202.965102.32590HepG2SUCLG1
CCNCENSG00000112237.81676.529102014.07400-0.264602.965902.38790HepG2TAF15
CCNCENSG00000112237.8666.237601170.80770-0.8134010.586409.30220HepG2TARDBP
CCNCENSG00000112237.8821.166001432.58950-0.802907.022406.29310HepG2TIAL1
CCNCENSG00000112237.81043.284201445.10470-0.470004.150203.48770HepG2TRIM56
CCNCENSG00000112237.81759.603202213.45150-0.331002.484101.69430HepG2UBE2L3
CCNCENSG00000112237.81108.482601561.70310-0.494507.979406.30680HepG2UTP18
CCNCENSG00000112237.8976.428801466.89300-0.5872011.4124010.32860HepG2UTP3
CCNCENSG00000112237.81323.877501671.01720-0.336005.631104.92210HepG2ZNF622
CCNCENSG00000112237.82456.878002160.676700.185201.919301.43040K562AGGF1
CCNCENSG00000112237.81547.735403099.82000-1.0020021.2951019.84090K562AQR
CCNCENSG00000112237.81485.132901776.81820-0.258702.584001.32830K562BCCIP
CCNCENSG00000112237.81413.505401716.99830-0.280603.355602.29500K562BCLAF1
CCNCENSG00000112237.81009.023301279.26570-0.342402.336701.54110K562BOP1
CCNCENSG00000112237.8302.03420720.71810-1.2547018.1646014.89440K562CCAR1
CCNCENSG00000112237.8977.450001302.59890-0.414304.550703.14500K562CSTF2
CCNCENSG00000112237.82100.423902637.65410-0.328605.160304.30860K562DDX47
CCNCENSG00000112237.82792.529902419.415800.206802.050401.30780K562DKC1
CCNCENSG00000112237.8918.972101334.38890-0.538103.586202.10660K562EEF2
CCNCENSG00000112237.81599.025501937.45850-0.277003.033102.28550K562EIF2S2
CCNCENSG00000112237.8509.22660733.08890-0.525702.281901.37790K562EIF3A
CCNCENSG00000112237.81244.062901616.53540-0.377804.706703.68100K562EIF3G
CCNCENSG00000112237.81366.134301665.13090-0.285502.168301.43780K562EIF4A3
CCNCENSG00000112237.82537.953403463.50790-0.448607.928106.35390K562EIF4G2
CCNCENSG00000112237.81214.611901671.51450-0.460704.601003.48830K562FIP1L1
CCNCENSG00000112237.82640.732801721.644500.617103.925303.04820K562G3BP2
CCNCENSG00000112237.81148.826501996.53740-0.7973015.4082013.18540K562HNRNPA1
CCNCENSG00000112237.8803.355001331.34490-0.7288010.233407.99520K562HNRNPF
CCNCENSG00000112237.81908.461902383.78420-0.320803.079801.95980K562HNRNPL
CCNCENSG00000112237.81740.304301374.815500.340002.219301.38920K562HNRNPM
CCNCENSG00000112237.81842.649302210.95220-0.262902.819401.91710K562HNRNPU
CCNCENSG00000112237.81671.860802251.38340-0.429402.387901.53710K562MATR3
CCNCENSG00000112237.8992.493401267.74070-0.353102.285801.49110K562METAP2
CCNCENSG00000112237.82474.464101873.541900.401202.537601.70080K562NAA15
CCNCENSG00000112237.81492.416001933.97870-0.373907.627906.47330K562NSUN2
CCNCENSG00000112237.8844.132701787.86980-1.082707.199205.34530K562PABPN1
CCNCENSG00000112237.81008.812901336.74730-0.406103.469802.44210K562PSIP1
CCNCENSG00000112237.82931.156603938.38680-0.426107.471305.87210K562PUM2
CCNCENSG00000112237.83228.340902229.801500.533804.232403.58310K562PUS1
CCNCENSG00000112237.82727.344802172.487700.328004.121503.41440K562RBM15
CCNCENSG00000112237.81894.492902448.28780-0.370003.900901.98220K562RBM17
CCNCENSG00000112237.8979.936001219.55330-0.315602.597201.64060K562RCC2
CCNCENSG00000112237.81240.864401592.05240-0.359505.421303.20570K562RPS10
CCNCENSG00000112237.81520.379601908.44620-0.328003.990603.01980K562SF3A3
CCNCENSG00000112237.8932.390801235.01750-0.405502.682901.72270K562SF3B1
CCNCENSG00000112237.81398.285301790.91530-0.357003.814202.80470K562SF3B4
CCNCENSG00000112237.8736.827001156.10960-0.649907.361905.46190K562SRFBP1
CCNCENSG00000112237.81550.735001955.25360-0.334405.397404.14200K562SRPK2
CCNCENSG00000112237.81268.799102174.50290-0.777205.269404.27610K562TARDBP
CCNCENSG00000112237.81580.024402097.46950-0.408702.237601.50860K562TIA1
CCNCENSG00000112237.8801.452101285.73400-0.681907.104705.55070K562TIAL1
CCNCENSG00000112237.81038.850801365.86430-0.394803.346802.28710K562TRIM56
CCNCENSG00000112237.83419.980904260.43320-0.317002.838501.41800K562UBE2L3
CCNCENSG00000112237.81128.678501754.66250-0.636609.607007.93270K562WDR3
CCNCENSG00000112237.82856.234403492.27070-0.290102.651401.80940K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCNC is not available on ENCORE database.





14 RBPs can affect the splicing of CCNC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.114000.000080.00249includedK562SRSF1
SECCNCENSG00000112237.8chr6-100010717100010824100009472100009557100016371100016504-0.093000.000000.00000excludedK562SRSF1
SECCNCENSG00000112237.8chr6-999920549999214999990377999914859999298799993106-0.074000.000040.04764excludedHepG2TROVE2
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.083000.000370.00531includedK562AQR
SECCNCENSG00000112237.8chr6-999973839999757999994270999943509999809399998185-0.053000.000850.01068excludedK562AQR
SECCNCENSG00000112237.8chr6-999920549999214999990377999914859999298799993106-0.071000.000040.00306excludedK562FXR1
SECCNCENSG00000112237.8chr6-999920819999214999991339999914859999298799993106-0.065000.000170.03572excludedK562DROSHA
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.158000.000000.00002includedK562LARP4
SECCNCENSG00000112237.8chr6-999920549999214999990377999914859999298799993106-0.053000.004350.07300excludedK562U2AF1
SECCNCENSG00000112237.8chr6-100010717100010824100009472100009557100016371100016504-0.110000.000000.00000excludedHepG2SRSF1
SECCNCENSG00000112237.8chr6-999920549999214999990377999914859999298799993106-0.057000.000040.00820excludedHepG2SSB
SECCNCENSG00000112237.8chr6-999920549999214999990377999914859999298799993106-0.061000.000430.03611excludedK562HNRNPUL1
SECCNCENSG00000112237.8chr6-999920549999214999990377999914859999298799993106-0.051000.000080.01244excludedHepG2SUPV3L1
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.079000.000000.00269includedHepG2NOL12
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.105000.000000.00001includedK562UTP18
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.076000.002090.06606includedK562HNRNPU
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.129000.000000.00000includedHepG2HNRNPC
SECCNCENSG00000112237.8chr6-9999205499992149999903779999148599992987999931060.284000.000000.00000includedK562HNRNPC
A3SSCCNCENSG00000112237.8chr6-9999738399997579999973839999745199998093999981850.057000.000040.00040longerK562AQR
A3SSCCNCENSG00000112237.8chr6-9999205499992292999920549999214999992987999931300.219000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCNC is not avaliable on ENCORE database.