SOD1

General Information

Gene Name       : SOD1
Gene ID             : ENSG00000142168.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SOD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SOD1ENSG00000142168.14153.00177.34165.17ENCSR000AEF
HepG2SOD1ENSG00000142168.14494.52377.48436.00ENCSR985KAT
K562SOD1ENSG00000142168.14441.38387.76414.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SOD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SOD1 RNA is bound by 24 proteins.  







eCLIP assay for SOD1 is not avaliable on ENCORE database.





24 proteins are bound to SOD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr213304115633041190+3'-UTR3.816316.89197K562PUM2
chr213304084133040904+3'-UTR,CDS4.257168.52875HepG2G3BP1
chr213304083533040898+3'-UTR,CDS3.8275119.97679HepG2SUB1
chr213304089033040939+3'-UTR3.185445.69238HepG2RPS3
chr213304081233040895+3'-UTR,CDS3.8716927.04926HepG2LARP4
chr213304099433041084+3'-UTR6.9302871.67317HepG2SUB1
chr213304090433040967+3'-UTR5.215679.51654HepG2G3BP1
chr213304089533040970+3'-UTR4.2891532.22770HepG2LARP4
chr213304098533041078+3'-UTR5.3005032.34224K562NOLC1
chr213304088833040944+3'-UTR3.0374810.23555K562RPS3
chr213304089133040928+3'-UTR3.2876938.11286K562PABPC4
chr213304090033040975+3'-UTR3.7816210.62062K562APOBEC3C
chr213304107833041146+3'-UTR4.3334712.32653K562NOLC1
chr213304092833040973+3'-UTR3.6847756.10224K562PABPC4
chr213304108433041168+3'-UTR6.4959249.68144HepG2SUB1
chr213304109833041187+3'-UTR3.982196.74427K562IGF2BP1
chr213303208133032132+5'-UTR,CDS,intron-Proximal3.2953211.88863K562GEMIN5
chr213303206533032126+5'-UTR,CDS,intron-Proximal3.171397.95581K562PUM1
chr213303201333032083+5'-UTR4.2645223.99753HepG2DDX3X
chr213303200633032081+5'-UTR4.4560539.20815K562GEMIN5
chr213303200333032079+5'-UTR4.49315400.00000K562DDX3X
chr213303200933032082+5'-UTR3.3642616.36156K562RPS3
chr213303207933032102+5'-UTR,CDS,intron-Proximal4.82860400.00000K562DDX3X
chr213303202233032086+5'-UTR,CDS4.0055513.68085K562DROSHA
chr213303202633032079+5'-UTR4.350909.65734HepG2RPS3
chr213303964133039688+CDS5.0419014.40315HepG2LARP4
chr213303957033039620+CDS,intron-Proximal3.069448.01683HepG2LARP4
chr213303210633032197+CDS,intron-Proximal5.104436.38747HepG2AQR
chr213303610033036159+CDS,intron-Proximal5.5144511.99271HepG2G3BP1
chr213303880333038830+CDS3.860296.61008K562RPS3
chr213303957033039581+CDS,intron-Proximal4.070067.82266K562GRWD1
chr213303964333039689+CDS,intron-Proximal4.9566126.38249K562RPS3
chr213303957033039622+CDS,intron-Proximal3.8744411.92342K562APOBEC3C
chr213303957633039599+CDS3.121693.29996K562SND1
chr213303876133038777+CDS,intron-Proximal4.351243.63055K562ZNF800
chr213303878633038832+CDS,intron-Proximal3.163577.03133K562SND1
chr213303877733038829+CDS3.621525.49349K562ZNF800
chr213303212833032155+CDS,intron-Proximal3.398736.03511HepG2G3BP1
chr213304078233040794+CDS,intron-Proximal4.434968.35382K562RPS3
chr213303966333039709+CDS,intron-Proximal3.534946.27327K562RBM15
chr213303957533039634+CDS3.934183.40366HepG2UCHL5
chr213304078233040827+CDS,intron-Proximal3.245427.18951HepG2G3BP1
chr213304078333040829+CDS,intron-Proximal3.264197.92768K562APOBEC3C
chr213303957133039629+CDS4.6382025.44870K562RPS3
chr213303951433039613+CDS,intron-Proximal3.392118.31472K562SF3B4
chr213303209133032134+CDS,intron-Proximal4.2708323.55440K562RPS3
chr213303957033039643+CDS,intron-Proximal3.171615.41570HepG2GRWD1
chr213303965733039683+CDS3.667296.66214K562SND1
chr213303208633032146+CDS,intron-Proximal3.299498.00255K562DROSHA
chr213303611133036168+CDS5.7959711.76398HepG2LARP4
chr213303210233032149+CDS,intron-Proximal4.56788400.00000K562DDX3X
chr213303956933039620+CDS,intron-Proximal3.299937.61559K562BUD13
chr213303876033038789+CDS,intron-Proximal5.5913625.44539K562LIN28B
chr213303617233036199+CDS3.888685.14242HepG2G3BP1
chr213303610233036134+CDS,intron-Proximal4.4312923.79090K562GRWD1
chr213303957233039624+CDS3.241267.27839K562PABPC4
chr213303617833036199+CDS3.065267.44115K562ZNF622
chr213303957533039638+CDS4.584398.25459HepG2RPS3
chr213304078333040800+CDS,intron-Proximal3.339576.35635K562UCHL5
chr213303215333032171+CDS,intron-Proximal3.950885.83621K562AQR
chr213303959933039657+CDS3.160836.70143K562SND1
chr213303963833039689+CDS,intron-Proximal4.103565.63879HepG2RPS3
chr213303612633036186+CDS4.554674.10924HepG2ZNF800
chr213303617733036199+CDS3.033763.99689HepG2GRWD1
chr213303876133038822+CDS,intron-Proximal3.929808.77191HepG2G3BP1
chr213303968333039689+CDS,intron-Proximal3.444013.54461K562SND1
chr213303877533038832+CDS,intron-Proximal3.7607913.48557K562GRWD1
chr213303208633032142+CDS,intron-Proximal3.137257.88689HepG2RPS3
chr213304082333040889+CDS3.4538411.21096K562LARP4
chr213303957033039576+CDS,intron-Proximal3.558203.68647K562SND1
chr213303957033039618+CDS,intron-Proximal3.859736.49445HepG2G3BP1
chr213303962133039689+CDS,intron-Proximal3.6305010.38916HepG2G3BP1
chr213303616533036200+CDS,intron-Proximal6.6792530.91110K562LIN28B
chr213303957033039627+CDS,intron-Proximal3.2085614.87449K562UCHL5
chr213303617133036200+CDS,intron-Proximal3.406855.65286HepG2LIN28B
chr213303613433036182+CDS3.9414013.98267K562GRWD1
chr213303612033036181+CDS4.0012616.51100K562RPS3
chr213303958133039629+CDS3.052845.42026K562GRWD1
chr213304083333040888+CDS3.083019.57009K562RPS3
chr213303610233036135+CDS,intron-Proximal3.197289.81562K562PABPC4
chr213303963733039688+CDS3.1080511.75385K562UCHL5
chr213303610133036170+CDS,intron-Proximal3.971744.88910K562ZNF800
chr213303213433032154+CDS,intron-Proximal3.5175311.78616K562GRWD1
chr213303221633032311+intron-Distal,intron-Proximal4.286287.05950K562XRN2
chr213303217133032199+intron-Distal,intron-Proximal3.445437.17950K562AQR
chr213303232733032399+intron-Distal3.359073.77433K562XRN2
chr213303217633032217+intron-Distal,intron-Proximal3.762606.04229K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SOD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SOD1 is not available on ENCORE database.

  • 107 RBPs can affect the levels of SOD1.  








The Knockdown/knockout RNA-Seq assay for SOD1 is not available on ENCORE database.





107 RBPs can affect the gene expression of SOD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SOD1ENSG00000142168.101822.602502585.52310-0.504506.207304.67110HepG2AATF
SOD1ENSG00000142168.102607.744803418.15730-0.390408.917207.95250HepG2ACO1
SOD1ENSG00000142168.103603.775505050.83300-0.487005.145304.09120HepG2ASCC1
SOD1ENSG00000142168.104487.024805426.14640-0.274204.760703.90120HepG2AUH
SOD1ENSG00000142168.102818.139003686.33530-0.387404.129203.41430HepG2BOP1
SOD1ENSG00000142168.103769.304505080.11680-0.430603.054002.02700HepG2CCAR1
SOD1ENSG00000142168.102243.250001869.409800.262902.858901.82300HepG2YBX3
SOD1ENSG00000142168.104526.027303898.852300.215103.004102.33910HepG2CELF1
SOD1ENSG00000142168.101931.412403161.24000-0.7108026.9142024.98710HepG2DDX19B
SOD1ENSG00000142168.102432.518001835.591500.406106.414405.38070HepG2DNAJC21
SOD1ENSG00000142168.102254.644501819.424600.309305.629104.74600HepG2DNAJC2
SOD1ENSG00000142168.102518.623804828.67670-0.9390016.4563015.09250HepG2EIF2S1
SOD1ENSG00000142168.101556.816802277.86070-0.549102.542101.67140HepG2EIF3D
SOD1ENSG00000142168.102097.775102693.30730-0.360504.101802.81440HepG2EIF3G
SOD1ENSG00000142168.104080.406205195.99960-0.348702.007501.41590HepG2EIF4B
SOD1ENSG00000142168.104381.491206230.05120-0.5078014.8898013.67330HepG2ETF1
SOD1ENSG00000142168.103624.049004500.28740-0.312402.157301.47360HepG2FIP1L1
SOD1ENSG00000142168.102601.618803996.43340-0.6193010.632609.14120HepG2FUBP3
SOD1ENSG00000142168.102029.813102723.67460-0.424202.507801.44360HepG2FUS
SOD1ENSG00000142168.104217.623905384.93410-0.352503.012702.28980HepG2FXR1
SOD1ENSG00000142168.103738.179604994.62460-0.418003.591502.83750HepG2G3BP1
SOD1ENSG00000142168.104355.839805303.33770-0.283902.178101.39320HepG2G3BP2
SOD1ENSG00000142168.103235.442402061.331200.650308.245607.09790HepG2HNRNPC
SOD1ENSG00000142168.103840.065403136.504400.291902.740702.02620HepG2HNRNPF
SOD1ENSG00000142168.103626.344905059.12420-0.480405.927404.93540HepG2HNRNPK
SOD1ENSG00000142168.104355.568603818.069300.189903.045702.34070HepG2HNRNPL
SOD1ENSG00000142168.102864.041803660.98350-0.354203.068202.40980HepG2HNRNPLL
SOD1ENSG00000142168.102627.556003104.83380-0.240802.145101.30750HepG2HNRNPM
SOD1ENSG00000142168.103286.982805076.68070-0.627108.172207.07540HepG2IGF2BP2
SOD1ENSG00000142168.103207.854005416.75560-0.755809.876008.74070HepG2MATR3
SOD1ENSG00000142168.102577.131003641.96620-0.499007.445906.17980HepG2MSI2
SOD1ENSG00000142168.102715.872303733.87660-0.459302.827701.84940HepG2MTPAP
SOD1ENSG00000142168.104270.951305544.17670-0.376403.115002.44540HepG2NCBP2
SOD1ENSG00000142168.103552.792604156.43980-0.226402.134401.46300HepG2NOL12
SOD1ENSG00000142168.102625.608204936.65240-0.9109015.1078013.46410HepG2PABPC4
SOD1ENSG00000142168.103465.946105291.78690-0.6105019.0632017.70350HepG2PCBP1
SOD1ENSG00000142168.102561.832301826.384100.488108.861707.58970HepG2PPIL4
SOD1ENSG00000142168.102626.039505384.68360-1.0360052.2250050.50430HepG2PTBP1
SOD1ENSG00000142168.105006.881603967.851100.335502.853802.24880HepG2PUF60
SOD1ENSG00000142168.102766.097503481.59400-0.331906.717005.82910HepG2PUS1
SOD1ENSG00000142168.103657.984405831.54810-0.6728017.8173016.42660HepG2QKI
SOD1ENSG00000142168.10821.245902487.62370-1.5989019.1828017.49020HepG2RAVER1
SOD1ENSG00000142168.103466.040105292.57920-0.6107011.4453010.13450HepG2RBM25
SOD1ENSG00000142168.103605.728405992.55900-0.7329028.7757027.41110HepG2NELFE
SOD1ENSG00000142168.103892.113805581.39380-0.5201015.4984014.23190HepG2RECQL
SOD1ENSG00000142168.102767.177602124.361900.381302.268201.54220HepG2RPS3A
SOD1ENSG00000142168.101304.968002107.66110-0.691607.421506.20820HepG2RRP9
SOD1ENSG00000142168.102900.767201823.560900.6696023.0673021.45150HepG2SAFB2
SOD1ENSG00000142168.103566.043105605.98470-0.6526023.4375022.00020HepG2SF3B4
SOD1ENSG00000142168.104660.017603804.948400.292402.639701.95240HepG2SLBP
SOD1ENSG00000142168.102420.339502126.566300.186602.653902.02070HepG2SMN1
SOD1ENSG00000142168.104675.459405881.24100-0.331007.697006.97720HepG2SRFBP1
SOD1ENSG00000142168.104313.523305851.50210-0.4399012.7107011.85720HepG2SRSF1
SOD1ENSG00000142168.103691.771003081.535600.260602.639801.95940HepG2SRSF7
SOD1ENSG00000142168.103153.047904760.56700-0.5944020.5427019.29420HepG2SRSF9
SOD1ENSG00000142168.106514.992405106.239400.351408.230007.43660HepG2SSB
SOD1ENSG00000142168.103900.226205259.74620-0.431408.308407.42160HepG2TAF15
SOD1ENSG00000142168.102536.195703568.50650-0.492705.989804.97990HepG2TARDBP
SOD1ENSG00000142168.103455.990104832.79080-0.483807.812206.42070HepG2TIA1
SOD1ENSG00000142168.102666.314702007.515100.409308.025207.14360HepG2TRIM56
SOD1ENSG00000142168.104494.640503876.738900.213302.106901.35310HepG2TUFM
SOD1ENSG00000142168.103141.497505668.23760-0.851402.610701.65450HepG2U2AF2
SOD1ENSG00000142168.103325.538104052.09110-0.285105.359404.43770HepG2UPF1
SOD1ENSG00000142168.103209.936903912.14650-0.285405.312004.52680HepG2UTP3
SOD1ENSG00000142168.101781.364002446.93000-0.458002.745401.48730HepG2XRCC5
SOD1ENSG00000142168.103749.327502706.739700.470004.682103.74780HepG2XRN2
SOD1ENSG00000142168.102455.581202747.99840-0.162301.967701.38610HepG2ZC3H8
SOD1ENSG00000142168.105996.808504456.535300.4282015.6309014.59580HepG2ZNF622
SOD1ENSG00000142168.1012634.916508382.289300.5919019.8636018.45850K562AGGF1
SOD1ENSG00000142168.1011349.316009211.397100.301003.292902.19620K562AKAP8
SOD1ENSG00000142168.1012830.716608722.281900.556709.574308.26890K562AKAP8L
SOD1ENSG00000142168.108455.0818011618.59480-0.458505.620604.83540K562AQR
SOD1ENSG00000142168.1010584.826509152.019000.209702.371401.53100K562ATP5C1
SOD1ENSG00000142168.103955.465805822.07130-0.557707.416705.96010K562BOP1
SOD1ENSG00000142168.105220.092807002.12130-0.423702.972801.49260K562BUD13
SOD1ENSG00000142168.107230.2220011516.60090-0.671604.584403.17250K562CNOT7
SOD1ENSG00000142168.104394.303306190.63810-0.494508.546207.15120K562CPSF6
SOD1ENSG00000142168.106994.257009834.72990-0.491705.990303.79900K562DDX19B
SOD1ENSG00000142168.107457.9188011017.12960-0.5629010.423909.25220K562DDX47
SOD1ENSG00000142168.1011285.078309384.985200.265903.179402.23270K562DKC1
SOD1ENSG00000142168.106172.807708058.63220-0.384607.834406.71550K562EIF2S2
SOD1ENSG00000142168.102002.085303390.86470-0.760105.635504.16640K562EIF3A
SOD1ENSG00000142168.103614.723504708.22630-0.381302.778401.73990K562EIF3D
SOD1ENSG00000142168.103461.468604318.82550-0.319304.473403.47220K562EIF3G
SOD1ENSG00000142168.105416.432007682.99680-0.504303.978901.98090K562ESF1
SOD1ENSG00000142168.109505.741507226.082200.395504.581303.46950K562FIP1L1
SOD1ENSG00000142168.104107.467806298.62240-0.616809.337007.71490K562FMR1
SOD1ENSG00000142168.103959.327305338.56160-0.431204.198603.05270K562FTO
SOD1ENSG00000142168.106477.936105025.501800.366204.306003.57500K562FXR1
SOD1ENSG00000142168.106813.652608090.51450-0.247803.273802.02990K562GLRX3
SOD1ENSG00000142168.104007.906405910.62060-0.560508.942607.50620K562GPKOW
SOD1ENSG00000142168.103465.177205032.59980-0.538408.496507.50150K562HNRNPC
SOD1ENSG00000142168.1012010.455409256.065600.375705.522004.26680K562KIF1C
SOD1ENSG00000142168.103430.995805046.71080-0.556704.826803.55280K562KRR1
SOD1ENSG00000142168.107031.338005568.636700.336403.853702.85370K562MAGOH
SOD1ENSG00000142168.1010478.289908860.701900.241802.353801.38920K562MAK16
SOD1ENSG00000142168.1012247.4438010369.195000.240102.703101.80810K562MBNL1
SOD1ENSG00000142168.104642.078405769.38950-0.313603.362702.39440K562METAP2
SOD1ENSG00000142168.106739.362108506.10160-0.335908.447307.10820K562MTPAP
SOD1ENSG00000142168.105640.409404333.533000.380203.331901.88610K562NONO
SOD1ENSG00000142168.107562.399809451.15160-0.3216012.9863011.53400K562NSUN2
SOD1ENSG00000142168.106233.4434011064.04500-0.827806.244104.38050K562PABPC1
SOD1ENSG00000142168.104330.407905040.41690-0.219002.269901.54380K562POLR2G
SOD1ENSG00000142168.107207.2889010243.24360-0.507103.441001.42150K562PPIL4
SOD1ENSG00000142168.103794.186504512.56510-0.250202.237001.43130K562PSIP1
SOD1ENSG00000142168.1013447.7266015330.62510-0.189102.301801.33640K562PUM1
SOD1ENSG00000142168.1013150.0443015018.98800-0.191702.803001.83790K562PUM2
SOD1ENSG00000142168.1010777.398108649.181600.317303.142602.57060K562PUS1
SOD1ENSG00000142168.1011304.211408428.094100.423506.867605.96110K562RBM15
SOD1ENSG00000142168.103143.615504358.81810-0.471504.153203.15120K562RPS19
SOD1ENSG00000142168.107248.0922010269.45690-0.502703.119501.43180K562RPS3A
SOD1ENSG00000142168.106404.083309325.71270-0.5422015.2967013.49400K562SF3A3
SOD1ENSG00000142168.103468.246905620.90150-0.696608.978907.15400K562SF3B1
SOD1ENSG00000142168.108199.240109554.37940-0.220704.831903.63750K562SRPK2
SOD1ENSG00000142168.103132.122504340.15050-0.470602.204201.37810K562TIAL1
SOD1ENSG00000142168.1013616.7774016250.04300-0.255103.250601.71650K562UBE2L3
SOD1ENSG00000142168.106287.1284010021.24780-0.6726030.0732028.00400K562UPF1
SOD1ENSG00000142168.106723.652508574.87930-0.350904.528103.39480K562WDR3
SOD1ENSG00000142168.107334.780008916.78290-0.281806.571005.31910K562WDR43
SOD1ENSG00000142168.1010965.7650013088.77390-0.255302.354701.56850K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SOD1 is not available on ENCORE database.





13 RBPs can affect the splicing of SOD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXESOD1ENSG00000142168.10chr21+3303610233036199330387613303883133031934330321543303957033039688-0.094000.000440.010392includedK562U2AF1
MXESOD1ENSG00000142168.10chr21+3303610233036199330387613303883133031934330321543303957033039688-0.168000.000000.000002includedHepG2TAF15
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.168000.000000.000001includedK562NONO
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.119000.000010.000581includedK562TARDBP
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.169000.000000.000001includedHepG2NOL12
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.240000.000000.000001includedHepG2DDX55
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.173000.000000.000001includedHepG2U2AF2
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.075000.000510.046831includedK562RBFOX2
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.129000.000000.000251includedK562TIA1
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.169000.000000.000001includedHepG2HNRNPL
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.087000.000020.001621includedK562DHX30
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.094000.000610.013281includedK562SF3B4
MXESOD1ENSG00000142168.10chr21+33036102330361993303880133038831330319343303215433039570330396540.108000.000010.000611includedK562PRPF8
MXESOD1ENSG00000142168.10chr21+33036102330361993303876133038831330319343303215433039570330396880.127000.000010.000551includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SOD1 is not avaliable on ENCORE database.