TXNDC17

General Information

Gene Name       : TXNDC17
Gene ID             : ENSG00000129235.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TXNDC17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TXNDC17ENSG00000129235.1053.93121.0887.50ENCSR000AEF
HepG2TXNDC17ENSG00000129235.10151.08109.13130.11ENCSR985KAT
K562TXNDC17ENSG00000129235.10145.12104.36124.74ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TXNDC17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TXNDC17 RNA is bound by 3 proteins.  







eCLIP assay for TXNDC17 is not avaliable on ENCORE database.





3 proteins are bound to TXNDC17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1765462706546325+3'-UTR,CDS,intron-Proximal3.591314.91517HepG2LARP4
chr1765463256546421+3'-UTR,CDS5.8787812.66607HepG2LARP4
chr1765455896545645+3'-UTR,CDS,intron-Distal,intron-Proximal3.260783.28764HepG2LARP4
chr1765463116546435+3'-UTR,CDS6.111358.71274HepG2SUB1
chr1765443486544473+5'-UTR,CDS,intron-Proximal3.998577.54621HepG2DDX3X
chr1765443566544445+5'-UTR,CDS,intron-Proximal5.4046654.46339K562DDX3X
chr1765450726545111+CDS,intron-Proximal3.8729910.61329K562DDX3X
chr1765444456544535+CDS,intron-Distal,intron-Proximal4.6570457.23267K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TXNDC17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TXNDC17 is not available on ENCORE database.

  • 78 RBPs can affect the levels of TXNDC17.  








The Knockdown/knockout RNA-Seq assay for TXNDC17 is not available on ENCORE database.





78 RBPs can affect the gene expression of TXNDC17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TXNDC17ENSG00000129235.6701.10070523.654800.420903.035802.40380HepG2ACO1
TXNDC17ENSG00000129235.6246.10930383.60680-0.640304.096902.91050HepG2ADAR
TXNDC17ENSG00000129235.61218.07110834.947500.544703.931103.31410HepG2AKAP1
TXNDC17ENSG00000129235.6964.01810656.326000.554504.571603.59070HepG2CIRBP
TXNDC17ENSG00000129235.6416.16230286.110800.540502.222201.54230HepG2CNOT7
TXNDC17ENSG00000129235.6258.46030427.59200-0.726303.312902.56770HepG2CPSF6
TXNDC17ENSG00000129235.6950.67820793.937400.259802.262701.67150HepG2CELF1
TXNDC17ENSG00000129235.6705.27430853.58390-0.275302.323801.63640HepG2DAZAP1
TXNDC17ENSG00000129235.6641.44080456.105100.491803.681202.90750HepG2DDX21
TXNDC17ENSG00000129235.6924.51330612.445000.594004.209103.27770HepG2DDX55
TXNDC17ENSG00000129235.6385.43520710.68350-0.882706.595305.56550HepG2EIF4B
TXNDC17ENSG00000129235.6586.553901080.04040-0.8807018.2060016.88810HepG2ETF1
TXNDC17ENSG00000129235.6667.03370511.722800.382302.673201.85280HepG2EWSR1
TXNDC17ENSG00000129235.6528.50180683.10990-0.370202.010201.43970HepG2G3BP1
TXNDC17ENSG00000129235.6383.11510499.95310-0.384002.912901.91500HepG2HDGF
TXNDC17ENSG00000129235.6932.69960784.513300.249502.141301.30800HepG2HNRNPA2B1
TXNDC17ENSG00000129235.6422.03310526.34530-0.318702.127301.49220HepG2HNRNPF
TXNDC17ENSG00000129235.6613.52610777.52120-0.341803.188802.46860HepG2HNRNPL
TXNDC17ENSG00000129235.6319.65260430.90570-0.430903.218202.56790HepG2HNRNPU
TXNDC17ENSG00000129235.6386.01100518.30020-0.425102.804602.07520HepG2IGF2BP1
TXNDC17ENSG00000129235.6321.41680651.82260-1.020004.052702.86500HepG2IGF2BP3
TXNDC17ENSG00000129235.6528.87320413.555400.354702.177701.45530HepG2MSI2
TXNDC17ENSG00000129235.6427.18010274.903400.635803.341501.76250HepG2NKRF
TXNDC17ENSG00000129235.6459.16240846.41710-0.8824013.5877011.95690HepG2NOL12
TXNDC17ENSG00000129235.6661.88790410.151300.690304.311303.38290HepG2NSUN2
TXNDC17ENSG00000129235.6418.02130261.471500.676803.030102.09850HepG2PABPC1
TXNDC17ENSG00000129235.6486.22710675.12920-0.473503.047002.29140HepG2PABPC4
TXNDC17ENSG00000129235.6377.41240671.37800-0.8310012.5762011.43110HepG2PCBP1
TXNDC17ENSG00000129235.6301.76310384.33330-0.348901.965601.33570HepG2PPIL4
TXNDC17ENSG00000129235.6353.03470472.43920-0.420302.051201.35180HepG2PRPF8
TXNDC17ENSG00000129235.6557.93790857.11810-0.619406.858305.81950HepG2PUM2
TXNDC17ENSG00000129235.6458.03500739.89090-0.691908.196707.20960HepG2QKI
TXNDC17ENSG00000129235.61309.05810902.709100.536107.651606.88930HepG2RBM22
TXNDC17ENSG00000129235.6480.85420671.48300-0.481803.917803.12570HepG2RBM25
TXNDC17ENSG00000129235.6490.44140708.06610-0.529805.783304.93400HepG2RECQL
TXNDC17ENSG00000129235.6247.74370432.47390-0.803803.279902.25180HepG2RPS10
TXNDC17ENSG00000129235.6324.19270467.33890-0.527602.704901.92550HepG2RRP9
TXNDC17ENSG00000129235.6554.49170383.740000.530905.418504.56980HepG2SAFB2
TXNDC17ENSG00000129235.6482.73530711.26410-0.559206.345005.51080HepG2SF3B4
TXNDC17ENSG00000129235.6614.89320774.81330-0.333502.977902.25250HepG2SLBP
TXNDC17ENSG00000129235.6629.93240797.82380-0.340902.881902.24320HepG2SRSF5
TXNDC17ENSG00000129235.6505.99120603.96300-0.255301.782801.32250HepG2SRSF9
TXNDC17ENSG00000129235.6446.30130667.25150-0.580205.976905.20590HepG2TAF15
TXNDC17ENSG00000129235.6398.03380613.15470-0.623406.112804.87600HepG2TIA1
TXNDC17ENSG00000129235.6222.19690418.70180-0.914109.085708.27160HepG2TIAL1
TXNDC17ENSG00000129235.6597.78760789.43640-0.401202.910402.01210HepG2TUFM
TXNDC17ENSG00000129235.6477.98060360.151800.408202.173801.50090HepG2UCHL5
TXNDC17ENSG00000129235.6545.47420424.471900.361701.886901.37210HepG2UTP3
TXNDC17ENSG00000129235.6786.18370600.159200.389402.233901.57670HepG2XRN2
TXNDC17ENSG00000129235.6624.69560400.937600.639706.840606.00590K562AGGF1
TXNDC17ENSG00000129235.6654.57760417.183400.649805.729904.76960K562AKAP8L
TXNDC17ENSG00000129235.6581.808001085.46020-0.899704.746704.01540K562AQR
TXNDC17ENSG00000129235.6521.93760651.16200-0.319102.610801.68120K562BCLAF1
TXNDC17ENSG00000129235.6238.87240397.74260-0.735602.683601.91080K562CPSF6
TXNDC17ENSG00000129235.6357.63690494.00360-0.466003.175102.03250K562CSTF2
TXNDC17ENSG00000129235.6518.54870669.85010-0.369403.037502.35840K562DDX47
TXNDC17ENSG00000129235.6766.89040967.94060-0.335903.095602.10470K562EIF4G2
TXNDC17ENSG00000129235.6319.70890479.12270-0.583604.917103.41780K562GLRX3
TXNDC17ENSG00000129235.6446.12880673.46780-0.594105.860404.32690K562HNRNPA1
TXNDC17ENSG00000129235.6213.32800323.19760-0.599303.312202.66670K562HNRNPC
TXNDC17ENSG00000129235.6524.84200316.949400.727502.816401.87730K562HNRNPM
TXNDC17ENSG00000129235.6447.04080745.78290-0.738309.853808.18410K562HNRNPU
TXNDC17ENSG00000129235.6682.62410522.336700.386002.447001.69510K562HSPD1
TXNDC17ENSG00000129235.6575.65350442.772200.378502.056401.35570K562KIF1C
TXNDC17ENSG00000129235.6170.41480324.20450-0.927903.569302.49360K562KRR1
TXNDC17ENSG00000129235.6374.94290503.74010-0.426003.337802.45300K562MTPAP
TXNDC17ENSG00000129235.6384.36770559.67220-0.542105.665704.65340K562NSUN2
TXNDC17ENSG00000129235.6740.52510437.441700.759408.028206.46600K562PPIG
TXNDC17ENSG00000129235.6593.44220436.308400.443702.649501.91520K562PRPF8
TXNDC17ENSG00000129235.6410.50940289.773700.502402.707801.81460K562PSIP1
TXNDC17ENSG00000129235.6798.26180536.772500.572506.101105.14690K562PTBP1
TXNDC17ENSG00000129235.6738.13820413.805700.834807.900907.03050K562PUS1
TXNDC17ENSG00000129235.6192.37850444.42050-1.2080010.534908.91270K562RPS19
TXNDC17ENSG00000129235.6332.81320223.739700.572802.593701.62630K562RPS3
TXNDC17ENSG00000129235.6227.13410361.07390-0.668702.550401.61760K562SF3B1
TXNDC17ENSG00000129235.6375.45810565.84260-0.591706.358505.00840K562SRPK2
TXNDC17ENSG00000129235.6705.84630526.212900.423603.165902.41410K562SRSF1
TXNDC17ENSG00000129235.6265.25860399.54950-0.591003.872602.32070K562SSB
TXNDC17ENSG00000129235.6271.20140422.42520-0.639303.811402.60480K562SUPV3L1
TXNDC17ENSG00000129235.6150.77830278.71780-0.886405.163403.84440K562TIAL1
TXNDC17ENSG00000129235.6448.37990593.43460-0.404403.286402.50750K562UPF1
TXNDC17ENSG00000129235.6309.52350507.77960-0.714206.595405.21010K562WDR3
TXNDC17ENSG00000129235.6788.082001222.99410-0.634003.855502.80690K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TXNDC17 is not available on ENCORE database.





5 RBPs can affect the splicing of TXNDC17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETXNDC17ENSG00000129235.6chr17+654507265452526544353654454765455686545644-0.067000.000090.00367excludedHepG2HNRNPK
SETXNDC17ENSG00000129235.6chr17+654507265451546544346654454765455686545644-0.091000.000160.00296excludedHepG2U2AF2
SETXNDC17ENSG00000129235.6chr17+654507265452526544353654454765455686545644-0.063000.000200.01776excludedHepG2NCBP2
SETXNDC17ENSG00000129235.6chr17+654507265452526544353654454765455686545644-0.167000.001610.03303excludedK562U2AF1
SETXNDC17ENSG00000129235.6chr17+654507265451546544346654454765455686545644-0.059000.000250.00631excludedK562U2AF2
A3SSTXNDC17ENSG00000129235.6chr17+6546236654644065462706546440654549365456440.157000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TXNDC17 is not avaliable on ENCORE database.