RP11-1035H13.3

General Information

Gene Name       : RP11-1035H13.3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-1035H13.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-1035H13.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-1035H13.3 RNA is bound by 43 proteins.  







eCLIP assay for RP11-1035H13.3 is not avaliable on ENCORE database.





43 proteins are bound to RP11-1035H13.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161881275218812832-5'-UTR,CDS,intron-Distal,intron-Proximal4.1005436.25902K562GEMIN5
chr161881277618812835-5'-UTR,CDS,intron-Distal,intron-Proximal3.977028.72457K562RBM15
chr161881274918812862-5'-UTR,CDS,intron-Distal,intron-Proximal3.0420818.72506HepG2GRSF1
chr161881278518812830-5'-UTR,CDS,intron-Distal,intron-Proximal4.3696231.99072HepG2RPS3
chr161881275218812864-5'-UTR,CDS,intron-Distal,intron-Proximal4.6799628.50980K562RPS3
chr161881281218812865-5'-UTR,intron-Distal,intron-Proximal5.1015865.96706HepG2DDX3X
chr161881273118812865-5'-UTR,CDS,intron-Distal,intron-Proximal3.8948810.24009HepG2RBM15
chr161881274618812868-5'-UTR,CDS,intron-Distal,intron-Proximal4.3125113.78112K562NCBP2
chr161881275518812823-5'-UTR,CDS,intron-Distal,intron-Proximal4.1744235.96349K562DROSHA
chr161881277318812838-5'-UTR,CDS,intron-Distal,intron-Proximal3.3803018.71826HepG2DDX6
chr161881276418812850-5'-UTR,CDS,intron-Distal,intron-Proximal3.8064629.44524K562DDX6
chr161881275018812861-5'-UTR,CDS,intron-Distal,intron-Proximal3.4370661.29704K562DDX3X
chr161881274818812805-5'-UTR,CDS,intron-Distal,intron-Proximal3.721995.27922HepG2UCHL5
chr161881275918812812-5'-UTR,CDS,intron-Distal,intron-Proximal4.2142550.91714HepG2DDX3X
chr161879941018799420-5'-UTR,CDS,intron-Distal3.5386846.51086HepG2LARP4
chr161880681118806851-CDS,intron-Distal3.8857412.52977HepG2SND1
chr161879942018799448-5'-UTR,CDS,intron-Distal,intron-Proximal3.3904545.39500HepG2LARP4
chr161880039318800442-5'-UTR,CDS,intron-Distal,intron-Proximal3.611549.25274K562WRN
chr161880931118809352-CDS,intron-Distal,intron-Proximal5.068928.79491K562TIA1
chr161879942418799448-5'-UTR,CDS,intron-Distal,intron-Proximal3.1150442.38563K562PABPC4
chr161880592018806004-3'-UTR,CDS,intron-Distal,intron-Proximal4.2181822.16998HepG2SND1
chr161880041718800441-5'-UTR,CDS,intron-Distal,intron-Proximal3.735249.53709K562RPS3
chr161880038318800417-CDS,intron-Distal4.065025.17248K562RPS3
chr161881275118812773-CDS,intron-Distal,intron-Proximal3.768127.04317HepG2DDX6
chr161881002318810121-5'-UTR,CDS,intron-Distal,intron-Proximal4.1042426.05756HepG2RPS3
chr161880043618800441-5'-UTR,CDS,intron-Distal,intron-Proximal3.4188647.49197HepG2LARP4
chr161880041318800496-5'-UTR,CDS,intron-Distal,intron-Proximal3.1027137.37765HepG2BUD13
chr161880999918810068-CDS,intron-Distal,intron-Proximal4.295885.73990HepG2PRPF8
chr161880042218800433-CDS,intron-Distal4.60331400.00000K562PABPC4
chr161880032818800344-CDS,intron-Distal3.6072530.99247HepG2LARP4
chr161880041818800435-CDS,intron-Distal4.841947.12467HepG2DDX3X
chr161880042318800435-CDS,intron-Distal3.5822461.20805HepG2LARP4
chr161880043418800441-5'-UTR,CDS,intron-Distal,intron-Proximal5.112846.30933K562EIF3G
chr161880034418800363-CDS,intron-Distal3.8156825.42629HepG2LARP4
chr161879939518799459-5'-UTR,CDS,intron-Distal,intron-Proximal3.2156130.31146HepG2SUB1
chr161880687518806955-CDS,intron-Distal,intron-Proximal4.124753.59236HepG2AQR
chr161881013618810158-5'-UTR,CDS,intron-Distal,intron-Proximal3.554225.44241K562DROSHA
chr161880038518800434-CDS,intron-Distal4.412776.89950K562EIF3G
chr161880031518800328-CDS,intron-Distal3.4339939.13899HepG2LARP4
chr161880038018800441-5'-UTR,CDS,intron-Distal,intron-Proximal3.4702630.80236K562GEMIN5
chr161881005418810122-5'-UTR,CDS,intron-Distal3.167704.08504HepG2G3BP1
chr161880043418800440-5'-UTR,CDS,intron-Distal3.03287400.00000K562YBX3
chr161881275118812754-CDS,intron-Distal,intron-Proximal3.1189211.91268K562FTO
chr161880037918800406-CDS,intron-Distal4.18085400.00000K562PABPC4
chr161880030418800328-CDS,intron-Distal3.7438711.84182HepG2YBX3
chr161881012118810157-5'-UTR,CDS,intron-Distal,intron-Proximal3.8649614.66573HepG2RPS3
chr161880037418800441-5'-UTR,CDS,intron-Distal,intron-Proximal3.337877.04099HepG2RPS3
chr161880036318800409-CDS,intron-Distal3.7185946.12123HepG2LARP4
chr161880026618800310-CDS,intron-Distal,intron-Proximal4.720138.77485HepG2PRPF8
chr161879940518799410-5'-UTR,CDS,intron-Distal3.2147741.61050HepG2LARP4
chr161880042818800471-5'-UTR,CDS,intron-Distal,intron-Proximal3.170177.07785K562GPKOW
chr161881271618812767-5'-UTR,CDS,intron-Distal,intron-Proximal3.6178110.59445HepG2PRPF8
chr161881275318812785-CDS,intron-Distal,intron-Proximal3.8257516.74466HepG2RPS3
chr161880041218800521-5'-UTR,CDS,intron-Distal,intron-Proximal5.8054812.49979HepG2AQR
chr161879940318799424-5'-UTR,CDS,intron-Distal3.0020044.82157K562PABPC4
chr161881002018810125-5'-UTR,CDS,intron-Distal,intron-Proximal3.1275111.12558K562RPS3
chr161880593218806000-3'-UTR,CDS,intron-Distal,intron-Proximal4.5088619.69958HepG2RPS3
chr161880592118806002-3'-UTR,CDS,intron-Distal,intron-Proximal3.9773233.77752K562SND1
chr161880030118800354-CDS,intron-Distal,intron-Proximal3.445624.51787HepG2AKAP1
chr161880925018809316-CDS,intron-Distal,intron-Proximal3.1315518.37505K562SND1
chr161881011118810156-5'-UTR,CDS,intron-Distal3.292228.39625HepG2DDX3X
chr161881275118812759-CDS,intron-Distal,intron-Proximal3.5992811.10936HepG2DDX3X
chr161881012218810157-5'-UTR,CDS,intron-Distal,intron-Proximal4.714724.96722HepG2G3BP1
chr161880043518800441-5'-UTR,CDS,intron-Distal,intron-Proximal3.438864.72220HepG2DDX3X
chr161880030218800359-CDS,intron-Distal,intron-Proximal3.067035.53410HepG2SUB1
chr161880040618800421-CDS,intron-Distal4.17188400.00000K562PABPC4
chr161880922118809259-CDS,intron-Distal,intron-Proximal3.348246.23623K562GPKOW
chr161880022618800309-CDS,intron-Distal,intron-Proximal3.956244.70265HepG2AQR
chr161880032818800344-CDS,intron-Distal3.6725011.69906HepG2YBX3
chr161880043318800441-5'-UTR,CDS,intron-Distal,intron-Proximal4.97344400.00000K562PABPC4
chr161881011518810156-5'-UTR,CDS,intron-Distal3.0829911.20934K562DDX3X
chr161880036318800441-5'-UTR,CDS,intron-Distal,intron-Proximal3.3871413.79970K562DDX6
chr161880030418800314-CDS,intron-Distal3.0570727.22523HepG2LARP4
chr161880040918800423-CDS,intron-Distal3.5724559.73824HepG2LARP4
chr161880037318800441-5'-UTR,CDS,intron-Distal,intron-Proximal3.340305.47953HepG2AKAP1
chr161880041118800464-5'-UTR,CDS,intron-Distal,intron-Proximal4.1388615.85124K562SF3B4
chr161880335118803420-3'-UTR,intron-Distal3.932469.30685HepG2TIAL1
chr161880156118801613-5'-UTR,intron-Distal,intron-Proximal3.542673.25727K562METAP2
chr161880445018804500-3'-UTR,intron-Distal3.662926.94885HepG2SUB1
chr161880307718803116-3'-UTR,intron-Distal4.2339437.27898HepG2DDX55
chr161880160218801628-5'-UTR,intron-Distal,intron-Proximal3.519687.62565K562RPS3
chr161880310718803121-3'-UTR,intron-Distal3.5681717.20793HepG2FUBP3
chr161880128318801336-5'-UTR,intron-Distal3.379058.81681HepG2EFTUD2
chr161880303018803060-3'-UTR,intron-Distal3.383806.92107K562TIA1
chr161880046418800498-intron-Distal,intron-Proximal4.8061610.20178K562SF3B4
chr161880386318803959-3'-UTR,intron-Distal3.2127312.06520HepG2UPF1
chr161880403718804068-3'-UTR,intron-Distal3.674416.33520K562IGF2BP1
chr161880066918800727-intron-Distal3.832309.29186HepG2U2AF2
chr161880425318804292-3'-UTR,intron-Distal,intron-Proximal4.437583.04397HepG2TIA1
chr161880318118803231-3'-UTR,intron-Distal4.4108548.27501HepG2FUBP3
chr161880344318803494-3'-UTR,intron-Distal4.185493.90287K562LIN28B
chr161880314618803166-3'-UTR,intron-Distal3.7542311.17747HepG2DDX55
chr161880694418806979-intron-Distal,intron-Proximal3.489513.73266K562KHSRP
chr161880157018801593-5'-UTR,intron-Distal,intron-Proximal4.6922768.36014K562YBX3
chr161880587218805913-intron-Distal,intron-Proximal4.932626.04760K562AQR
chr161880366018803690-3'-UTR,intron-Distal5.065657.84269K562IGF2BP1
chr161880312618803161-3'-UTR,intron-Distal3.8044411.23989K562PABPC4
chr161880415018804173-3'-UTR,intron-Distal,intron-Proximal4.2693614.27634K562IGF2BP1
chr161880312518803172-3'-UTR,intron-Distal5.3039121.00997HepG2TIAL1
chr161880416618804229-3'-UTR,intron-Distal,intron-Proximal3.3923713.08328HepG2DDX6
chr161880305718803109-3'-UTR,intron-Distal3.4568921.13119K562PABPC4
chr161880916518809220-intron-Distal,intron-Proximal4.212105.28701K562PRPF8
chr161880333618803351-3'-UTR,intron-Distal3.8217814.86383K562PUM2
chr161880310818803135-3'-UTR,intron-Distal4.990464.84254HepG2TIA1
chr161880122218801287-5'-UTR,intron-Distal3.068677.68200HepG2BUD13
chr161880160718801624-5'-UTR,intron-Distal,intron-Proximal4.190404.74430HepG2STAU2
chr161880163518801656-5'-UTR,intron-Distal,intron-Proximal3.1511743.94010HepG2LARP4
chr161880356518803618-3'-UTR,intron-Distal3.336895.98135HepG2UPF1
chr161880989618809952-intron-Distal,intron-Proximal4.660705.33214K562PRPF8
chr161880150618801554-5'-UTR,intron-Distal3.709946.95612HepG2PRPF8
chr161880422018804346-3'-UTR,intron-Distal,intron-Proximal3.4792923.86337HepG2SUB1
chr161880163318801655-5'-UTR,intron-Distal,intron-Proximal5.15074400.00000K562PABPC4
chr161880403818804068-3'-UTR,intron-Distal3.128763.50315HepG2UPF1
chr161880162818801660-5'-UTR,intron-Distal,intron-Proximal3.002624.94658K562DDX6
chr161880319118803296-3'-UTR,intron-Distal3.6384425.07422K562DDX6
chr161880413818804218-3'-UTR,intron-Distal,intron-Proximal4.677135.19607HepG2IGF2BP3
chr161880414218804217-3'-UTR,intron-Distal,intron-Proximal4.0167511.35042K562IGF2BP2
chr161880465018804693-3'-UTR,CDS,intron-Distal4.0751313.48259K562SND1
chr161880458618804650-3'-UTR,CDS,intron-Distal3.1381310.50311K562SND1
chr161880163018801635-5'-UTR,intron-Distal,intron-Proximal3.1281244.13714HepG2LARP4
chr161880319718803275-3'-UTR,intron-Distal3.412045.41915K562LARP4
chr161880334918803436-3'-UTR,intron-Distal3.3080910.67741K562IGF2BP1
chr161880159318801606-5'-UTR,intron-Distal,intron-Proximal4.3125452.55771K562YBX3
chr161880151118801570-5'-UTR,intron-Distal5.492118.83608K562AQR
chr161880139518801487-5'-UTR,intron-Distal3.262053.99662HepG2XPO5
chr161880448918804553-3'-UTR,intron-Distal3.055485.47867K562IGF2BP1
chr161880336718803422-3'-UTR,intron-Distal4.200843.24831HepG2TIA1
chr161880306018803133-3'-UTR,intron-Distal4.2968926.42966K562TIA1
chr161880319018803231-3'-UTR,intron-Distal3.9203212.08014HepG2DDX55
chr161880319618803240-3'-UTR,intron-Distal3.469105.01244HepG2TIAL1
chr161880306718803123-3'-UTR,intron-Distal3.934629.62953K562IGF2BP1
chr161880423718804309-3'-UTR,intron-Distal,intron-Proximal4.4612617.74470K562TIA1
chr161880310618803158-3'-UTR,intron-Distal4.80739400.00000K562PUM2
chr161880318818803239-3'-UTR,intron-Distal4.657694.02104HepG2TIA1
chr161880116818801219-intron-Distal3.508643.39857HepG2HNRNPM
chr161880162818801655-5'-UTR,intron-Distal,intron-Proximal3.822278.28908K562WRN
chr161880303818803125-3'-UTR,intron-Distal6.5472223.17309HepG2TIAL1
chr161880459018804653-3'-UTR,CDS,intron-Distal3.447724.50521HepG2SND1
chr161880434118804391-3'-UTR,intron-Distal,intron-Proximal3.053684.58085K562LIN28B
chr161880147018801513-5'-UTR,intron-Distal3.304483.21817HepG2BUD13
chr161880451118804574-3'-UTR,intron-Distal3.0802310.63317HepG2RPS3
chr161880303618803084-3'-UTR,intron-Distal5.50308400.00000K562PUM2
chr161879927618799327-intron-Distal,intron-Proximal3.9220710.70487K562KHSRP
chr161880424918804329-3'-UTR,intron-Distal,intron-Proximal3.119425.41840HepG2TIAL1
chr161880044318800497-5'-UTR,intron-Distal,intron-Proximal4.0982710.70483K562SMNDC1
chr161880315418803171-3'-UTR,intron-Distal3.137929.68704HepG2FUBP3
chr161880308418803105-3'-UTR,intron-Distal5.18664400.00000K562PUM2
chr161880087318800946-intron-Distal4.442958.41610K562KHSRP
chr161880159618801651-5'-UTR,intron-Distal,intron-Proximal3.503737.29565HepG2RPS3
chr161880306118803141-3'-UTR,intron-Distal3.4340327.43072K562DDX6
chr161879927118799349-intron-Distal,intron-Proximal6.0259011.40920K562PRPF8
chr161879932718799346-intron-Distal,intron-Proximal3.685358.56571K562KHSRP
chr161880323918803299-3'-UTR,intron-Distal4.4391552.77399HepG2FUBP3
chr161880156518801570-5'-UTR,intron-Distal4.6111752.95550K562YBX3
chr161880162918801633-5'-UTR,intron-Distal,intron-Proximal3.0024316.77827HepG2YBX3
chr161880344118803510-3'-UTR,intron-Distal3.242677.37430HepG2LIN28B
chr161880303918803149-3'-UTR,intron-Distal5.1860215.45907HepG2DDX6
chr161881271118812750-5'-UTR,intron-Distal,intron-Proximal6.133587.81430K562AQR
chr161880319718803278-3'-UTR,intron-Distal3.425734.98157K562APOBEC3C
chr161880319718803214-3'-UTR,intron-Distal3.374693.34065K562IGF2BP1
chr161880323118803301-3'-UTR,intron-Distal3.4722621.01079HepG2DDX55
chr161880322618803288-3'-UTR,intron-Distal3.8684235.11843K562PABPC4
chr161880148318801605-5'-UTR,intron-Distal,intron-Proximal5.5473436.44396HepG2EFTUD2
chr161880158118801648-5'-UTR,intron-Distal,intron-Proximal4.993246.38747HepG2AQR
chr161881243018812463-intron-Distal5.466445.19464K562DROSHA
chr161880156218801651-5'-UTR,intron-Distal,intron-Proximal4.4774129.64685HepG2PRPF8
chr161880303018803077-3'-UTR,intron-Distal4.2857312.84106HepG2DDX55
chr161880306918803108-3'-UTR,intron-Distal4.229535.41382HepG2TIA1
chr161880313718803154-3'-UTR,intron-Distal3.4027014.68229HepG2FUBP3
chr161880313318803158-3'-UTR,intron-Distal4.419594.23889K562TIA1
chr161880324118803297-3'-UTR,intron-Distal4.34868400.00000K562PUM2
chr161880437318804489-3'-UTR,intron-Distal3.8832214.71758K562IGF2BP1
chr161880319218803235-3'-UTR,intron-Distal4.0003755.71375K562PUM2
chr161880430918804328-3'-UTR,intron-Distal,intron-Proximal4.280097.00531K562TIA1
chr161880416418804202-3'-UTR,intron-Distal,intron-Proximal3.5254433.09310K562PUM2
chr161880411218804141-3'-UTR,intron-Distal,intron-Proximal4.753309.23779K562IGF2BP1
chr161880371318803783-3'-UTR,intron-Distal3.619648.28135K562IGF2BP2
chr161880311618803146-3'-UTR,intron-Distal4.0963033.49911HepG2DDX55
chr161880319418803226-3'-UTR,intron-Distal4.5586926.98540K562PABPC4
chr161880439218804443-3'-UTR,intron-Distal3.890003.04397HepG2TIA1
chr161880417318804234-3'-UTR,intron-Distal,intron-Proximal4.8966929.36729K562IGF2BP1
chr161880163318801655-5'-UTR,intron-Distal,intron-Proximal3.1124617.12613HepG2YBX3
chr161880325418803281-3'-UTR,intron-Distal4.404165.50278HepG2TIAL1
chr161880302518803107-3'-UTR,intron-Distal4.3513654.03986HepG2FUBP3
chr161880162818801655-5'-UTR,intron-Distal,intron-Proximal4.0592822.47488K562RPS3
chr161880423418804297-3'-UTR,intron-Distal,intron-Proximal3.292819.34074K562IGF2BP1
chr161880145418801546-5'-UTR,intron-Distal4.127146.15234K562PRPF8
chr161880436118804404-3'-UTR,intron-Distal3.519066.69562HepG2SUB1
chr161880374618803806-3'-UTR,intron-Distal3.6455413.18661K562IGF2BP1
chr161880320118803302-3'-UTR,intron-Distal4.8983818.16900HepG2SUB1
chr161880162918801633-5'-UTR,intron-Distal,intron-Proximal5.16810400.00000K562PABPC4
chr161880312118803137-3'-UTR,intron-Distal3.5952520.84463HepG2FUBP3
chr161880162918801657-5'-UTR,intron-Distal,intron-Proximal4.252336.68294K562EIF3G
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-1035H13.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-1035H13.3 is not available on ENCORE database.

  • 13 RBPs can affect the levels of RP11-1035H13.3.  








The Knockdown/knockout RNA-Seq assay for RP11-1035H13.3 is not available on ENCORE database.





13 RBPs can affect the gene expression of RP11-1035H13.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-1035H13.3ENSG00000260342.21.4149014.71320-3.378303.113601.62170HepG2ATP5C1
RP11-1035H13.3ENSG00000260342.24.8351024.75500-2.356103.049902.38110HepG2CELF1
RP11-1035H13.3ENSG00000260342.27.1088026.60930-1.904302.574101.85470HepG2DAZAP1
RP11-1035H13.3ENSG00000260342.20.0000012.37080-99999.999993.847502.47160HepG2EIF2S2
RP11-1035H13.3ENSG00000260342.26.6591025.15310-1.917302.028201.32320HepG2EIF4G2
RP11-1035H13.3ENSG00000260342.24.2538024.45870-2.523503.135602.14840HepG2HNRNPA2B1
RP11-1035H13.3ENSG00000260342.24.9460024.23650-2.292802.924702.23340HepG2HNRNPL
RP11-1035H13.3ENSG00000260342.20.0000011.19080-99999.999993.590302.20750HepG2NAA15
RP11-1035H13.3ENSG00000260342.20.000007.92410-99999.999991.926001.32740HepG2RAVER1
RP11-1035H13.3ENSG00000260342.20.000008.18410-99999.999992.592701.96680HepG2SMN1
RP11-1035H13.3ENSG00000260342.20.0000010.99710-99999.999993.272501.93060HepG2STAU1
RP11-1035H13.3ENSG00000260342.20.000009.09490-99999.999992.695301.65880HepG2UTP18
RP11-1035H13.3ENSG00000260342.268.540504.167304.039704.973104.22760K562AQR
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-1035H13.3 is not available on ENCORE database.





1 RBPs can affect the splicing of RP11-1035H13.3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRP11-1035H13.3ENSG00000260342.2chr16-187993841879962818799384187994811880030218800440-0.743000.000000.00000shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-1035H13.3 is not avaliable on ENCORE database.