NAPA

General Information

Gene Name       : NAPA
Gene ID             : ENSG00000105402.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NAPA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NAPAENSG00000105402.723.9950.7637.38ENCSR000AEF
HepG2NAPAENSG00000105402.746.1124.1435.12ENCSR985KAT
K562NAPAENSG00000105402.763.7255.2959.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NAPA is not avaliable on ENCORE database.



Proteins bound to RNA
  • NAPA RNA is bound by 27 proteins.  







eCLIP assay for NAPA is not avaliable on ENCORE database.





27 proteins are bound to NAPA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194799128447991323-3'-UTR,intron-Distal3.704833.06084HepG2HNRNPK
chr194799092247991029-3'-UTR,intron-Distal,intron-Proximal,polyA_signal4.006236.58258HepG2PCBP2
chr194799126747991334-3'-UTR,intron-Distal4.485604.80949K562HNRNPK
chr194799640647996431-3'-UTR,CDS,intron-Distal3.252724.11795K562YBX3
chr194799092347990973-3'-UTR,intron-Distal,intron-Proximal4.067826.14390K562PABPC4
chr194799639347996432-3'-UTR,CDS,intron-Distal,intron-Proximal3.515934.41267HepG2PPIG
chr194799099347991036-3'-UTR,intron-Distal4.052323.98590HepG2AKAP1
chr194799118447991263-3'-UTR,intron-Distal3.082583.61796K562FAM120A
chr194799099547991189-3'-UTR,intron-Distal5.3900716.83940HepG2UPF1
chr194799138947991505-3'-UTR,intron-Distal,intron-Proximal4.6079711.02367HepG2UPF1
chr194799098247991192-3'-UTR,intron-Distal3.6236827.98205K562UPF1
chr194799142847991462-3'-UTR,intron-Distal,intron-Proximal4.139304.02740K562PCBP1
chr194799118947991267-3'-UTR,intron-Distal4.694865.41597HepG2UPF1
chr194799143947991510-3'-UTR,intron-Distal,intron-Proximal3.300737.31176K562UPF1
chr194799094147991043-3'-UTR,intron-Distal3.240833.62729K562HNRNPK
chr194799641647996501-3'-UTR,CDS,intron-Distal,intron-Proximal3.959785.93727K562SF3B4
chr194799106547991189-3'-UTR,intron-Distal4.183525.75263HepG2LARP4
chr194799119247991271-3'-UTR,intron-Distal3.7221912.54016K562UPF1
chr194799161347991672-3'-UTR,CDS,intron-Distal,intron-Proximal3.943475.56912HepG2AQR
chr194799103647991112-3'-UTR,intron-Distal5.013747.78976HepG2AKAP1
chr194799292447992969-3'-UTR,CDS,intron-Distal,intron-Proximal4.466294.92499HepG2AQR
chr194799667147996705-3'-UTR,CDS,intron-Distal,intron-Proximal3.660684.96634HepG2PPIG
chr194799157347991674-3'-UTR,CDS,intron-Distal,intron-Proximal4.6956716.66732K562AQR
chr194799097347991078-3'-UTR,intron-Distal4.468529.63547K562PABPC4
chr194800384248003903-3'-UTR,CDS,intron-Distal,intron-Proximal3.507314.54206HepG2PRPF8
chr194800397548004022-3'-UTR,CDS,intron-Distal,intron-Proximal3.344633.99908K562BUD13
chr194799120147991256-3'-UTR,intron-Distal3.481325.02737K562IGF2BP2
chr194799127247991340-3'-UTR,intron-Distal4.194799.75002K562UPF1
chr194799104047991127-3'-UTR,intron-Distal6.2167123.05166K562PCBP1
chr194799669747996751-3'-UTR,CDS,intron-Distal,intron-Proximal3.536098.43159K562YBX3
chr194799141547991486-3'-UTR,intron-Distal,intron-Proximal3.317583.44343HepG2AKAP1
chr194799111247991180-3'-UTR,intron-Distal5.110066.75461HepG2AKAP1
chr194799096347991040-3'-UTR,intron-Distal6.4478811.66801K562PCBP1
chr194799290647992985-3'-UTR,CDS,intron-Distal,intron-Proximal4.3368411.17766HepG2PRPF8
chr194799122447991302-3'-UTR,intron-Distal3.427639.31352K562PUM2
chr194799119247991251-3'-UTR,intron-Distal3.527874.41670HepG2AKAP1
chr194800672848006768-5'-UTR,CDS,intron-Distal,intron-Proximal3.006213.01994K562BUD13
chr194801822748018303-5'-UTR,intron-Distal,intron-Proximal4.0882213.57302K562DDX3X
chr194801817148018227-5'-UTR,CDS,intron-Distal,intron-Proximal4.4048919.29649K562DDX3X
chr194801805648018125-CDS,intron-Distal4.218905.34978HepG2PRPF8
chr194801811648018171-CDS,intron-Distal3.3048210.87648K562DDX3X
chr194799465747994740-intron-Distal,intron-Proximal4.388804.24247HepG2CDC40
chr194799291647992968-intron-Distal,intron-Proximal4.8775318.73357K562AQR
chr194799468547994728-intron-Distal4.2814113.90518K562AGGF1
chr194799382447993867-intron-Distal4.022017.30217HepG2AGGF1
chr194799324147993361-intron-Distal5.9287814.89749K562HNRNPL
chr194799325347993343-intron-Distal3.987834.09469HepG2XPO5
chr194799331647993364-intron-Distal5.364099.09108HepG2AGGF1
chr194801737048017471-intron-Distal4.398935.18476K562RBFOX2
chr194799325547993408-intron-Distal5.766939.56764K562AKAP8L
chr194799395947994022-intron-Distal,intron-Proximal6.1893229.24981K562AGGF1
chr194801571448015761-intron-Distal3.851863.59342K562CSTF2T
chr194799326147993353-intron-Distal4.991416.41765K562GTF2F1
chr194799310447993176-intron-Distal,intron-Proximal5.040789.76847K562HNRNPL
chr194799310247993165-intron-Distal,intron-Proximal5.9503822.79675K562AGGF1
chr194799578047995835-intron-Distal,intron-Proximal3.535703.67675HepG2DDX59
chr194799472847994742-intron-Distal,intron-Proximal5.416147.43302K562AGGF1
chr194799578447995891-intron-Distal,intron-Proximal3.826685.84244HepG2HNRNPK
chr194799563447995711-intron-Distal3.900993.17235HepG2HNRNPK
chr194799538047995432-intron-Distal,intron-Proximal6.0736910.98510K562SF3B4
chr194799388047993934-intron-Distal4.888414.21977HepG2HNRNPL
chr194799386047993911-intron-Distal8.3578057.42197K562AGGF1
chr194799325347993319-intron-Distal7.5319475.01771K562AGGF1
chr194801549448015547-intron-Distal3.832793.16310HepG2CSTF2T
chr194799324547993316-intron-Distal5.8735213.09523HepG2AGGF1
chr194799330347993408-intron-Distal4.331747.92375HepG2HNRNPL
chr194799387147993912-intron-Distal5.8672018.16657K562HNRNPL
chr194799595847996093-intron-Distal,intron-Proximal5.3006710.73270K562HNRNPK
chr194799304247993085-intron-Distal,intron-Proximal4.134424.66841K562HNRNPL
chr194799538147995457-intron-Distal,intron-Proximal4.229088.97597HepG2SF3B4
chr194799319247993241-intron-Distal4.371394.94713K562HNRNPL
chr194799597747996141-intron-Distal,intron-Proximal3.960789.04738HepG2HNRNPK
chr194799325647993328-intron-Distal3.962933.57264HepG2GTF2F1
chr194799396447994045-intron-Distal,intron-Proximal4.822907.24657K562HNRNPL
chr194799331947993396-intron-Distal5.9773447.94066K562AGGF1
chr194799386747993912-intron-Distal5.672537.88143HepG2AGGF1
chr194799325747993303-intron-Distal5.246436.36545HepG2HNRNPL
chr194799310547993161-intron-Distal,intron-Proximal4.359904.07596K562GTF2F1
chr194799578747995873-intron-Distal,intron-Proximal3.784294.85687K562DROSHA
chr194799975047999822-intron-Distal,intron-Proximal4.517085.08471HepG2HNRNPK
chr194799318247993253-intron-Distal7.9275645.64815K562AGGF1
chr194799387147993911-intron-Distal5.541604.95161K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NAPA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NAPA is not available on ENCORE database.

  • 93 RBPs can affect the levels of NAPA.  








The Knockdown/knockout RNA-Seq assay for NAPA is not available on ENCORE database.





93 RBPs can affect the gene expression of NAPA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NAPAENSG00000105402.31721.517101371.315200.328002.235301.38520HepG2ABCF1
NAPAENSG00000105402.3953.59960793.191500.265602.474501.89410HepG2ACO1
NAPAENSG00000105402.31301.377501016.680300.356101.993901.53310HepG2AKAP1
NAPAENSG00000105402.3628.82920841.17210-0.419702.757701.97480HepG2ASCC1
NAPAENSG00000105402.31456.537801198.804300.280803.020302.30820HepG2AUH
NAPAENSG00000105402.3989.17230696.012900.507002.891001.93050HepG2BCCIP
NAPAENSG00000105402.31970.90430919.714001.0995022.7804021.32670HepG2BOP1
NAPAENSG00000105402.31430.04380792.951100.8507024.7277023.18910HepG2CKAP4
NAPAENSG00000105402.31026.37620467.194501.1354010.039908.61700HepG2CNOT7
NAPAENSG00000105402.3978.15700825.809000.244202.233001.64470HepG2CELF1
NAPAENSG00000105402.31028.17460887.757300.211702.295601.61170HepG2DAZAP1
NAPAENSG00000105402.3896.31900733.557300.289002.904902.05180HepG2DDX19B
NAPAENSG00000105402.3838.27510554.288900.596707.091505.35300HepG2DDX1
NAPAENSG00000105402.3435.49640561.83020-0.367502.233501.42290HepG2DDX24
NAPAENSG00000105402.31697.66490973.805100.801709.809508.69510HepG2DDX3X
NAPAENSG00000105402.3968.44050684.359700.500802.873302.08680HepG2DDX55
NAPAENSG00000105402.3921.02400758.851800.279302.372601.73820HepG2DKC1
NAPAENSG00000105402.3710.14110543.513100.385702.154701.52580HepG2DNAJC21
NAPAENSG00000105402.3783.41260538.707600.540207.721906.70390HepG2DNAJC2
NAPAENSG00000105402.3963.01420665.053100.534003.287802.29010HepG2EEF2
NAPAENSG00000105402.31237.80670888.579200.478103.310002.61200HepG2EIF4A3
NAPAENSG00000105402.3935.254001187.96400-0.345102.418901.39730HepG2ESF1
NAPAENSG00000105402.31647.159601376.439100.258902.484601.91050HepG2ETF1
NAPAENSG00000105402.31059.11290775.029500.450404.287603.24870HepG2EWSR1
NAPAENSG00000105402.3667.88360883.29830-0.403302.669601.79620HepG2G3BP2
NAPAENSG00000105402.3658.61130480.588000.454502.958902.03050HepG2GEMIN5
NAPAENSG00000105402.3809.38280548.720000.560705.050904.21310HepG2HNRNPA1
NAPAENSG00000105402.3822.07550610.347600.429503.002002.28380HepG2HNRNPC
NAPAENSG00000105402.3964.80320808.621300.254702.834802.15450HepG2HNRNPL
NAPAENSG00000105402.3930.93180606.312500.618509.568508.49510HepG2HNRNPU
NAPAENSG00000105402.31585.179501233.721400.361503.692602.86690HepG2IGF2BP1
NAPAENSG00000105402.31369.39310845.449900.695607.656306.58940HepG2IGF2BP2
NAPAENSG00000105402.3918.26450619.328500.568109.710308.41870HepG2ILF2
NAPAENSG00000105402.3635.33910850.49510-0.420802.238001.34820HepG2KHSRP
NAPAENSG00000105402.32676.096101215.980401.1379016.1912014.21970HepG2LARP4
NAPAENSG00000105402.3722.47470528.638200.450602.665801.48010HepG2LIN28B
NAPAENSG00000105402.31139.80190897.188100.345202.091401.51820HepG2MAGOH
NAPAENSG00000105402.31228.04050923.361800.411302.787802.15260HepG2NCBP2
NAPAENSG00000105402.3962.54930628.593600.614602.558101.51120HepG2NONO
NAPAENSG00000105402.3616.99950809.90340-0.392502.491401.78100HepG2NSUN2
NAPAENSG00000105402.3764.18590600.148100.348503.119002.22420HepG2PARN
NAPAENSG00000105402.31167.23380850.054800.457404.180703.53860HepG2PTBP1
NAPAENSG00000105402.31075.07460840.384200.355202.279601.73070HepG2PUF60
NAPAENSG00000105402.31255.20380892.166600.492403.666503.00430HepG2PUM1
NAPAENSG00000105402.31235.56960807.907100.6128011.6715010.55620HepG2PUS1
NAPAENSG00000105402.31359.917801150.437600.241202.085501.61870HepG2RBM22
NAPAENSG00000105402.3709.67840493.262300.524702.822901.75200HepG2RCC2
NAPAENSG00000105402.3635.62500881.11600-0.471205.301504.48270HepG2RECQL
NAPAENSG00000105402.31076.36550525.324401.0348017.3865016.04030HepG2RPS19
NAPAENSG00000105402.3782.62640560.154900.482402.205001.48650HepG2RPS2
NAPAENSG00000105402.3894.22100527.110300.762406.585305.14870HepG2SERBP1
NAPAENSG00000105402.32164.809601216.347600.831608.390607.16580HepG2SF3A3
NAPAENSG00000105402.31319.41120904.051300.545305.680704.69930HepG2SF3B1
NAPAENSG00000105402.31057.20500884.972000.256502.255301.71480HepG2SF3B4
NAPAENSG00000105402.31090.20560629.674100.7918018.4822017.04630HepG2SMN1
NAPAENSG00000105402.31526.866001299.358100.232702.417701.93840HepG2SRFBP1
NAPAENSG00000105402.31123.00760923.737400.281702.733402.26270HepG2SRSF1
NAPAENSG00000105402.31100.83410829.830900.407605.576504.73320HepG2SRSF5
NAPAENSG00000105402.31369.871701128.117400.280003.048202.51510HepG2SSB
NAPAENSG00000105402.31078.56260943.683100.192601.940601.40260HepG2SUCLG1
NAPAENSG00000105402.3900.91530681.216000.403201.946301.36500HepG2SUPV3L1
NAPAENSG00000105402.3678.70830830.34190-0.290902.046101.55120HepG2TAF15
NAPAENSG00000105402.31125.05400890.327100.337502.326301.65420HepG2TARDBP
NAPAENSG00000105402.31636.99070589.153501.4742046.1257044.54440HepG2TIAL1
NAPAENSG00000105402.31060.76790594.411900.8355017.7405016.47280HepG2TRIM56
NAPAENSG00000105402.31577.809401184.581800.413403.538702.83360HepG2U2AF1
NAPAENSG00000105402.31323.30550869.209400.606303.814502.82550HepG2UBE2L3
NAPAENSG00000105402.3636.36550402.378700.661205.062904.02950HepG2UCHL5
NAPAENSG00000105402.31445.497301078.711500.422206.598505.59530HepG2UPF1
NAPAENSG00000105402.3906.38570623.644400.539302.641401.66130HepG2UPF2
NAPAENSG00000105402.31204.34860883.521600.446807.086606.09190HepG2ZC3H8
NAPAENSG00000105402.31648.335701186.380200.4743010.179009.29610HepG2ZNF622
NAPAENSG00000105402.31013.59330794.180200.351803.634401.88380K562AKAP1
NAPAENSG00000105402.32732.237002203.002000.310502.827801.83200K562AKAP8
NAPAENSG00000105402.33303.696901744.230100.9214015.3774014.14620K562AQR
NAPAENSG00000105402.31303.357301008.686700.369702.862801.78710K562CCAR1
NAPAENSG00000105402.32710.231703175.38320-0.228502.200801.33180K562CELF1
NAPAENSG00000105402.31241.19440778.011400.673803.450502.42690K562EFTUD2
NAPAENSG00000105402.31088.15630840.722300.372102.991302.14020K562EIF4A3
NAPAENSG00000105402.32242.241901554.975900.527906.326205.01030K562FIP1L1
NAPAENSG00000105402.31247.89030874.315800.513207.339306.41740K562FXR1
NAPAENSG00000105402.3166.15080417.14080-1.328007.317106.05110K562G3BP2
NAPAENSG00000105402.31522.785601204.061900.338702.793901.99590K562GPKOW
NAPAENSG00000105402.31707.423801178.069700.535306.660105.77410K562HNRNPC
NAPAENSG00000105402.3978.13870663.729300.559302.215501.32640K562IGF2BP2
NAPAENSG00000105402.31659.130101195.333500.472904.222302.33640K562LIN28B
NAPAENSG00000105402.3920.22480696.963400.400802.470301.67320K562MAGOH
NAPAENSG00000105402.32593.354902119.225300.291202.364801.39650K562MAK16
NAPAENSG00000105402.32252.303802752.58220-0.289402.509801.43620K562MSI2
NAPAENSG00000105402.32330.762701317.602100.822804.425003.09530K562PABPN1
NAPAENSG00000105402.32752.982702060.563200.417903.508102.57110K562PCBP3
NAPAENSG00000105402.32086.141601580.456100.400404.681403.63890K562POLR2G
NAPAENSG00000105402.31181.02690757.104500.641404.199603.27580K562PRPF8
NAPAENSG00000105402.31051.03390677.187700.634106.392605.41830K562PTBP1
NAPAENSG00000105402.32420.594202997.05830-0.308203.649102.41310K562PUM1
NAPAENSG00000105402.32407.699002936.42070-0.286403.662902.55810K562PUM2
NAPAENSG00000105402.33250.705602068.822700.651803.079502.51200K562PUS1
NAPAENSG00000105402.32580.046102015.773600.356003.978803.28350K562RBM15
NAPAENSG00000105402.31214.45610964.079900.333002.769601.77940K562RCC2
NAPAENSG00000105402.31853.862701408.432200.396303.279002.09960K562SAFB
NAPAENSG00000105402.3621.94540433.415200.520903.121802.21240K562SF3B4
NAPAENSG00000105402.31315.42160913.889200.525305.389003.81560K562SRFBP1
NAPAENSG00000105402.31654.419801946.05420-0.234203.149802.15690K562SRPK2
NAPAENSG00000105402.31145.43590663.936000.786706.669805.58050K562SRSF1
NAPAENSG00000105402.31087.34870828.683400.391803.239302.08340K562SRSF4
NAPAENSG00000105402.31450.934402040.16250-0.491705.079903.20140K562SSRP1
NAPAENSG00000105402.31068.64730671.803800.669603.450102.65620K562TARDBP
NAPAENSG00000105402.3968.93500648.068100.580205.325404.13710K562TIA1
NAPAENSG00000105402.31444.655201015.973100.507804.170502.99990K562TIAL1
NAPAENSG00000105402.31446.019401079.693600.421403.918702.75150K562TRIM56
NAPAENSG00000105402.3281.68360417.33230-0.567102.112801.41180K562U2AF2
NAPAENSG00000105402.32856.687902041.267400.4848011.214709.88840K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NAPA is not available on ENCORE database.





10 RBPs can affect the splicing of NAPA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENAPAENSG00000105402.3chr19-479962174799630247995271479953764799637547996431-0.073000.000690.02838excludedK562PRPF8
SENAPAENSG00000105402.3chr19-480066794800675948003889480040064801809948018296-0.063000.000010.00014excludedK562AQR
SENAPAENSG00000105402.3chr19-480066494800675948003889480040064801809948018283-0.056000.000040.00111excludedK562PUS1
SENAPAENSG00000105402.3chr19-4800667948006759479988064799885348018099480182960.061000.000070.02103includedK562LARP4
SENAPAENSG00000105402.3chr19-480066794800675948003889480040064801809948018296-0.066000.000930.02886excludedHepG2SF3A3
SENAPAENSG00000105402.3chr19-479962074799630247995271479953764799637547996431-0.127000.004560.06470excludedK562HNRNPC
A3SSNAPAENSG00000105402.3chr19-4799667247996871479966724799675047998806479988530.054000.000030.00594longerK562EFTUD2
A3SSNAPAENSG00000105402.3chr19-4799296747993164479929674799301847994044479941130.120000.000000.00000longerK562AQR
A3SSNAPAENSG00000105402.3chr19-4799880647998943479988064799885348003889480040060.082000.000000.00001longerK562AQR
A3SSNAPAENSG00000105402.3chr19-4799667247996871479966724799675047998806479989430.221000.000000.00000longerK562AQR
A3SSNAPAENSG00000105402.3chr19-4799637547996520479963754799643147996672479968480.079000.000000.00000longerK562AQR
A3SSNAPAENSG00000105402.3chr19-4799527147995447479952714799537647996217479963020.212000.000000.00000longerK562AQR
A3SSNAPAENSG00000105402.3chr19-4799149147991669479914914799164647992967479930600.079000.000000.00000longerK562AQR
RINAPAENSG00000105402.3chr19-4799620747996431479962074799630247996375479964310.108000.001010.05616includedK562DROSHA
RINAPAENSG00000105402.3chr19-4799620747996431479962074799630247996375479964310.264000.000020.00048includedHepG2SF3A3
RINAPAENSG00000105402.3chr19-4799620747996431479962074799630247996375479964310.209000.000020.00110includedK562HNRNPC
RINAPAENSG00000105402.3chr19-4799620747996431479962074799630247996375479964310.393000.000000.00000includedK562SF3B1
RINAPAENSG00000105402.3chr19-4799620747996431479962074799630247996375479964310.267000.000000.00000includedK562PRPF8
RINAPAENSG00000105402.3chr19-4799620747996431479962074799630247996375479964310.249000.000000.00000includedK562RBM15
RINAPAENSG00000105402.3chr19-4799620747996431479962074799630247996375479964310.293000.000000.00000includedK562EFTUD2
RINAPAENSG00000105402.3chr19-4799527147996750479952714799537647996672479967500.111000.012840.06702includedK562AQR
MXENAPAENSG00000105402.3chr19-47996375479964314799667247996776479952714799537647998806479988530.689000.007160.048301includedK562AQR
MXENAPAENSG00000105402.3chr19-4799637547996431479966724799675047995271479953764799880647998853-0.105000.002760.048912includedK562PRPF8
MXENAPAENSG00000105402.3chr19-4799527147995376479963754799643147994044479941134799667247996750-0.124000.004220.066142includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NAPA is not avaliable on ENCORE database.