CD33

General Information

Gene Name       : CD33
Gene ID             : ENSG00000105383.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CD33)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CD33ENSG00000105383.140.740.390.56ENCSR000AEF
HepG2CD33ENSG00000105383.140.000.040.02ENCSR985KAT
K562CD33ENSG00000105383.1437.9340.3739.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CD33 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CD33 RNA is bound by 4 proteins.  







eCLIP assay for CD33 is not avaliable on ENCORE database.





4 proteins are bound to CD33 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195172907451729290+CDS3.955094.95875K562IGF2BP2
chr195172915251729227+CDS3.220614.29172K562YBX3
chr195173893151738982+CDS,intron-Proximal5.103314.86944K562AQR
chr195174089651740996+intron-Distal3.904893.50894K562SAFB2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CD33 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CD33 is not available on ENCORE database.

  • 77 RBPs can affect the levels of CD33.  








The Knockdown/knockout RNA-Seq assay for CD33 is not available on ENCORE database.





77 RBPs can affect the gene expression of CD33 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CD33ENSG00000105383.10140.458303.711805.2418025.8742024.43800HepG2AKAP1
CD33ENSG00000105383.1051.630800.0000099999.9999016.3017014.97320HepG2CKAP4
CD33ENSG00000105383.1032.543800.583605.801207.553706.30080HepG2CNOT7
CD33ENSG00000105383.1014.942000.0000099999.999904.511903.45080HepG2EWSR1
CD33ENSG00000105383.1021.101800.541005.285405.287603.74230HepG2GRSF1
CD33ENSG00000105383.109.279500.531804.124902.250501.69820HepG2HNRNPU
CD33ENSG00000105383.1012.188400.975203.643502.702801.67550HepG2PCBP2
CD33ENSG00000105383.1012.099701.246803.278602.064801.36270HepG2PRPF8
CD33ENSG00000105383.10133.239102.572905.6944028.8874027.56510HepG2RBM22
CD33ENSG00000105383.1010.162700.657203.950702.085601.54520HepG2RPS19
CD33ENSG00000105383.1047.165702.906904.020109.829309.04260HepG2SRFBP1
CD33ENSG00000105383.1012.439700.988003.654102.538501.99870HepG2TAF15
CD33ENSG00000105383.1022.455800.515405.445106.022605.33800HepG2TIAL1
CD33ENSG00000105383.10272.73610535.88560-0.9744010.109607.87040K562AARS
CD33ENSG00000105383.10720.341801078.53020-0.582306.186305.18220K562AKAP8L
CD33ENSG00000105383.10601.61700879.15680-0.547304.802903.09950K562APOBEC3C
CD33ENSG00000105383.10371.27780575.33980-0.631902.402301.84940K562AQR
CD33ENSG00000105383.10648.93180435.622500.574903.902102.15720K562BUD13
CD33ENSG00000105383.10882.014801238.72250-0.490005.807604.07080K562CCDC124
CD33ENSG00000105383.10508.08060678.53180-0.417402.869801.56390K562CIRBP
CD33ENSG00000105383.101200.37950612.467700.970702.935601.83560K562CNOT7
CD33ENSG00000105383.10798.38690547.944700.543005.103404.04450K562CPSF6
CD33ENSG00000105383.10847.638501216.11390-0.520805.119903.09240K562DDX19B
CD33ENSG00000105383.10452.46690827.38270-0.8707015.6266014.19250K562DDX47
CD33ENSG00000105383.10192.79630526.09600-1.4482015.4181012.69380K562EEF2
CD33ENSG00000105383.101221.08620428.539201.5106042.4168040.27470K562EIF2S2
CD33ENSG00000105383.10394.95160544.12250-0.462302.472301.50040K562EIF3D
CD33ENSG00000105383.10219.58390463.15520-1.076705.326904.23690K562EIF3G
CD33ENSG00000105383.10600.75330996.37490-0.7299012.3811010.47080K562EIF4G2
CD33ENSG00000105383.10728.22410478.131000.606903.930901.94150K562ESF1
CD33ENSG00000105383.10778.96160509.249300.613106.531504.53640K562EXOSC5
CD33ENSG00000105383.10873.58040557.571500.647706.178304.88640K562FMR1
CD33ENSG00000105383.10657.35410472.614200.475903.089502.11780K562FTO
CD33ENSG00000105383.10261.11440634.77190-1.2816022.9085021.28450K562FXR1
CD33ENSG00000105383.10867.83000605.285100.519703.920702.18790K562G3BP1
CD33ENSG00000105383.10440.96980585.44910-0.408901.930901.35180K562G3BP2
CD33ENSG00000105383.10729.56150523.131400.479802.410601.66730K562GPKOW
CD33ENSG00000105383.10916.32750570.937900.682404.532703.56820K562GRSF1
CD33ENSG00000105383.10502.62530703.75790-0.485604.164802.84910K562HNRNPA1
CD33ENSG00000105383.101159.48320573.561601.015403.172201.46860K562HNRNPAB
CD33ENSG00000105383.10555.90860779.34570-0.487405.095603.87020K562HNRNPU
CD33ENSG00000105383.101237.16470609.472901.0213012.8164011.14440K562HSPD1
CD33ENSG00000105383.10865.836701144.62390-0.402703.803002.81390K562KIF1C
CD33ENSG00000105383.10727.65430446.743900.703704.767703.50270K562KRR1
CD33ENSG00000105383.10747.50190522.866600.515504.655002.59700K562LSM11
CD33ENSG00000105383.10423.82920665.36400-0.650706.464805.15190K562MAGOH
CD33ENSG00000105383.10303.07700664.00340-1.1315017.2442014.86580K562MATR3
CD33ENSG00000105383.102092.910501282.263200.7067011.772209.68550K562MBNL1
CD33ENSG00000105383.10788.635801089.93240-0.466804.143902.29770K562NOL12
CD33ENSG00000105383.10470.87280647.75980-0.460102.803001.96580K562PCBP3
CD33ENSG00000105383.101169.70670771.166900.600905.611603.27160K562PKM
CD33ENSG00000105383.10331.72490496.82100-0.582704.370103.36000K562POLR2G
CD33ENSG00000105383.10736.65390510.457400.529103.556502.60750K562PPIG
CD33ENSG00000105383.10957.07080525.658800.8644010.937708.88030K562PSIP1
CD33ENSG00000105383.10713.648301087.09750-0.607206.742805.46820K562PUF60
CD33ENSG00000105383.101774.201001132.937200.6470011.738009.76350K562PUM2
CD33ENSG00000105383.10827.311701042.18000-0.333102.970402.36000K562RBM15
CD33ENSG00000105383.10733.50730555.398100.401202.918201.54540K562RBM25
CD33ENSG00000105383.10338.95390479.65670-0.500903.318802.23160K562RCC2
CD33ENSG00000105383.10456.76060652.27860-0.514103.780402.47990K562NELFE
CD33ENSG00000105383.10298.00300456.15440-0.614205.791703.51630K562RPS10
CD33ENSG00000105383.10268.57830503.75380-0.907407.371706.02400K562RPS19
CD33ENSG00000105383.10315.86950544.99260-0.786905.007603.60600K562RPS3
CD33ENSG00000105383.10179.94640505.65110-1.4906014.7350011.93510K562RRP9
CD33ENSG00000105383.10438.30060674.69530-0.622303.622101.51200K562SAFB2
CD33ENSG00000105383.10327.40700442.78270-0.435502.412401.40530K562SAFB
CD33ENSG00000105383.10304.49270457.74000-0.588103.894502.15960K562SDAD1
CD33ENSG00000105383.10141.25840423.19110-1.5830013.5936010.59590K562SERBP1
CD33ENSG00000105383.101260.95260504.405501.321803.200701.88340K562SF1
CD33ENSG00000105383.10951.78870635.424100.582807.640206.33780K562SF3A3
CD33ENSG00000105383.10413.23050608.85580-0.559205.214504.01880K562SF3B4
CD33ENSG00000105383.10409.01520565.46360-0.467302.864601.31390K562SRSF9
CD33ENSG00000105383.10355.80690498.36990-0.486102.991102.13270K562SYNCRIP
CD33ENSG00000105383.10491.31200641.37170-0.384502.367401.71090K562TARDBP
CD33ENSG00000105383.10852.67870537.190600.666506.805405.16890K562TRIM56
CD33ENSG00000105383.10697.38040921.08360-0.401404.411702.80430K562TROVE2
CD33ENSG00000105383.10362.12390586.16690-0.694807.195905.90680K562U2AF2
CD33ENSG00000105383.101799.445001225.812900.553706.529004.46070K562UBE2L3
CD33ENSG00000105383.101331.42690682.879400.9632025.5085023.59770K562UPF1
CD33ENSG00000105383.10325.80740607.58600-0.8991014.3876012.65320K562WDR43
CD33ENSG00000105383.101075.04190589.221600.867403.907601.81750K562XPO5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CD33 is not available on ENCORE database.





17 RBPs can affect the splicing of CD33 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECD33ENSG00000105383.10chr19+517284735172885451728353517284115172905851729337-0.358000.000000.00000excludedK562SRSF1
SECD33ENSG00000105383.10chr19+5174232751742559517387855173893151742772517432700.108000.000020.00163includedK562PRPF8
SECD33ENSG00000105383.10chr19+5172847351728854517283535172841151729058517293370.117000.004310.09377includedK562AKAP8L
SECD33ENSG00000105383.10chr19+517284735172885451728353517284115172905851729337-0.173000.000300.02956excludedK562SUPV3L1
SECD33ENSG00000105383.10chr19+5172847351728854517283535172841151729058517293370.264000.000000.00160includedK562LARP4
SECD33ENSG00000105383.10chr19+517284735172885451728353517284115172905851729337-0.184000.000170.04156excludedK562APOBEC3C
SECD33ENSG00000105383.10chr19+517284735172885451728353517284115172905851729337-0.180000.000460.03632excludedK562HNRNPL
SECD33ENSG00000105383.10chr19+517284735172885451728353517284115172905851729337-0.161000.000530.07833excludedK562EIF4G2
SECD33ENSG00000105383.10chr19+5172847351728854517283535172841151729058517293370.144000.000500.02024includedK562UTP18
SECD33ENSG00000105383.10chr19+5172847351728854517283535172841151729058517293370.312000.000110.00300includedK562U2AF2
SECD33ENSG00000105383.10chr19+5174232751742559517387725173893151742772517432700.063000.000840.03312includedK562HNRNPU
SECD33ENSG00000105383.10chr19+5172847351728854517283535172841151729058517293370.176000.000020.00117includedK562RBM15
SECD33ENSG00000105383.10chr19+5172847351728854517283535172841151729058517293370.114000.002840.06120includedK562AGGF1
SECD33ENSG00000105383.10chr19+517287265172885451728319517284115172905851729337-0.174000.000060.01440excludedK562ZC3H8
SECD33ENSG00000105383.10chr19+517284735172885451728353517284115172905851729337-0.381000.000000.00006excludedK562HNRNPC
A3SSCD33ENSG00000105383.10chr19+5172954151729612517295645172961251729058517293370.120000.013240.06724longerK562AQR
MXECD33ENSG00000105383.10chr19+51729058517293375173878551738931517283195172841151742772517431970.302000.000030.002931includedK562LIN28B

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CD33 is not avaliable on ENCORE database.