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LARP4
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
558
558-control
Exp_UID
558
558
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR805SRN
ENCSR192PUP
ENCODE_alias
gene-yeo:558
gene-yeo:558-control
RBP
LARP4
LARP4
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB580XQQ
ENCAB580XQQ
Antibody
A303-900A
A303-900A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
243
269
Replicate Information
Rep_UID
558_INPUT
558_01
558_02
Exp UID
558
558
558
Replicate_type
control
rep1
rep2
ENCODE_ACCESSION
ENCLB565DNA
ENCLB792DST
ENCLB615HVB
ENCODE_alias
gene-yeo:558_INPUT
gene-yeo:558_01
gene-yeo:558_02
Biosample Name
HepG2_081815
HepG2_081815
HepG2_111915
Biosample_ENCODE_Accession
ENCBS881CIF
ENCBS881CIF
ENCBS492SDY
Biosample_ENCODE_Alias
gene-yeo:HepG2_081815
gene-yeo:HepG2_081815
gene-yeo:HepG2_111915
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-08-18
2015-08-18
2015-11-19
Culture_End_Date
2015-09-10
2015-09-10
2015-12-10
Passage
4
4
4
QC Stats
Experiment QC
558
558-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
558_INPUT
558_01
558_02
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
558_INPUT
558_01
558_02
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
none
A03
A04
inline_barcode_2
none
G07
F05
i5_barcode
505
506
506
i7_barcode
701
702
702
Sequencing Information
Rep_UID
558_INPUT
558_01
558_02
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/558.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
558
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
558.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
558
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=558)
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