CNTN1

General Information

Gene Name       : CNTN1
Gene ID             : ENSG00000018236.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNTN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNTN1ENSG00000018236.140.000.000.00ENCSR000AEF
HepG2CNTN1ENSG00000018236.140.000.000.00ENCSR985KAT
K562CNTN1ENSG00000018236.140.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNTN1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on CNTN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CNTN1 is not avaliable on ENCORE database.






NO known proteins are bound to CNTN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CNTN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNTN1 is not available on ENCORE database.

  • 10 RBPs can affect the levels of CNTN1.  








The Knockdown/knockout RNA-Seq assay for CNTN1 is not available on ENCORE database.





10 RBPs can affect the gene expression of CNTN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNTN1ENSG00000018236.1022.579401.410404.000704.799204.03850HepG2BOP1
CNTN1ENSG00000018236.1012.784400.544404.553403.166302.46500HepG2CKAP4
CNTN1ENSG00000018236.1010.116800.0000099999.999902.736702.06180HepG2DDX21
CNTN1ENSG00000018236.1010.554600.0000099999.999903.034001.86480HepG2GRSF1
CNTN1ENSG00000018236.109.181700.0000099999.999902.468201.68570HepG2LARP4
CNTN1ENSG00000018236.1016.128500.0000099999.999904.215603.45310HepG2MATR3
CNTN1ENSG00000018236.1010.676900.576004.212202.189101.63520HepG2RPS19
CNTN1ENSG00000018236.1018.442100.451705.351403.979703.02870HepG2RPS2
CNTN1ENSG00000018236.109.043400.291104.957402.381701.79540HepG2SRSF5
CNTN1ENSG00000018236.1016.745401.015204.043803.716503.15490HepG2TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNTN1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CNTN1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CNTN1 is not avaliable on ENCORE database.