HMCES

General Information

Gene Name       : HMCES
Gene ID             : ENSG00000183624.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HMCES)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HMCESENSG00000183624.1318.7021.2519.98ENCSR000AEF
HepG2HMCESENSG00000183624.1334.2436.5435.39ENCSR985KAT
K562HMCESENSG00000183624.1333.9030.5032.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HMCES is not avaliable on ENCORE database.



Proteins bound to RNA
  • HMCES RNA is bound by 9 proteins.  







eCLIP assay for HMCES is not avaliable on ENCORE database.





9 proteins are bound to HMCES RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3129023743129023796+3'-UTR3.801447.47094K562PUM2
chr3129023797129023850+3'-UTR4.771963.15159HepG2LARP4
chr3129024787129024882+3'-UTR3.095734.26467K562UPF1
chr3129023733129023853+3'-UTR3.449274.48863K562NOLC1
chr3129023745129023797+3'-UTR3.708183.54552HepG2LARP4
chr3129024882129024956+3'-UTR3.257173.07801K562UPF1
chr3129024312129024356+3'-UTR5.855666.59792K562PABPC4
chr3129023733129023856+3'-UTR5.2649920.57144HepG2SUB1
chr3128997914128998036+5'-UTR,intron-Distal,intron-Proximal4.897757.46114HepG2DDX3X
chr3129020719129020814+CDS,intron-Proximal4.323596.01372K562AQR
chr3128998625128998774+CDS,intron-Proximal3.876013.56019HepG2GRWD1
chr3129017376129017431+CDS,intron-Proximal5.623638.88118K562AQR
chr3129017431129017487+intron-Distal,intron-Proximal3.831154.89208K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HMCES is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HMCES is not available on ENCORE database.

  • 43 RBPs can affect the levels of HMCES.  








The Knockdown/knockout RNA-Seq assay for HMCES is not available on ENCORE database.





43 RBPs can affect the gene expression of HMCES :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HMCESENSG00000183624.9695.23110918.04270-0.401102.573901.81430HepG2ASCC1
HMCESENSG00000183624.9583.32740872.20000-0.580404.751803.75330HepG2CIRBP
HMCESENSG00000183624.9310.22650521.88530-0.750406.136505.14530HepG2CPSF6
HMCESENSG00000183624.9742.36670922.15220-0.312903.059602.28640HepG2DAZAP1
HMCESENSG00000183624.9674.99340527.627600.355303.486702.56380HepG2DDX19B
HMCESENSG00000183624.9632.29820497.857700.344802.002801.41430HepG2DDX21
HMCESENSG00000183624.9507.04490877.70650-0.791607.846406.88260HepG2EIF2S1
HMCESENSG00000183624.9959.211601238.21430-0.368304.525703.79150HepG2ETF1
HMCESENSG00000183624.9703.75490557.468500.336102.245001.49310HepG2EWSR1
HMCESENSG00000183624.9717.92570907.84080-0.338601.854001.30370HepG2G3BP1
HMCESENSG00000183624.9738.50890919.16590-0.315701.891201.30820HepG2HNRNPK
HMCESENSG00000183624.9691.01430839.96980-0.281602.464301.82400HepG2HNRNPL
HMCESENSG00000183624.9880.22600634.519100.472102.882101.62140HepG2HSPD1
HMCESENSG00000183624.9352.32320490.50950-0.477404.427603.51950HepG2ILF2
HMCESENSG00000183624.9380.14750633.93420-0.737804.843803.18160HepG2KRR1
HMCESENSG00000183624.9700.85950914.41130-0.383703.269502.44280HepG2NOL12
HMCESENSG00000183624.9666.34510897.41700-0.429502.834202.10480HepG2PABPC4
HMCESENSG00000183624.9367.67980475.30750-0.370402.546501.73120HepG2PARN
HMCESENSG00000183624.9735.75470865.08100-0.233601.820101.31060HepG2PCBP1
HMCESENSG00000183624.9233.52360428.30080-0.875109.349408.03710HepG2PPIL4
HMCESENSG00000183624.9683.23910880.23480-0.365503.884303.26060HepG2PTBP1
HMCESENSG00000183624.9756.01280926.68870-0.293702.784302.19000HepG2PUM1
HMCESENSG00000183624.9714.86560925.98510-0.373302.943302.25140HepG2PUM2
HMCESENSG00000183624.9683.89410953.35330-0.479205.098404.28990HepG2QKI
HMCESENSG00000183624.9756.149201034.90830-0.452804.833704.19700HepG2RBM22
HMCESENSG00000183624.9625.64100865.21530-0.467704.215103.39790HepG2RBM25
HMCESENSG00000183624.9715.51590558.807200.356502.106601.48540HepG2SF3B1
HMCESENSG00000183624.9715.57530916.46940-0.357003.511602.85640HepG2SF3B4
HMCESENSG00000183624.9701.90800837.08480-0.254101.935001.32970HepG2SLBP
HMCESENSG00000183624.9972.339901168.87350-0.265602.881402.37290HepG2SRFBP1
HMCESENSG00000183624.91374.702601014.828700.437806.647905.91760HepG2SSB
HMCESENSG00000183624.9468.60610602.50060-0.362601.970401.38520HepG2SUPV3L1
HMCESENSG00000183624.9275.27590403.80320-0.552803.268302.18930HepG2TFIP11
HMCESENSG00000183624.9613.09030466.574100.393902.884202.37570HepG2TIAL1
HMCESENSG00000183624.9893.13790669.299000.416103.133602.46730HepG2U2AF1
HMCESENSG00000183624.9878.05150618.404200.505706.219505.38050HepG2UTP3
HMCESENSG00000183624.91275.39920831.831900.6165010.853309.82260K562AGGF1
HMCESENSG00000183624.91170.45490865.552400.435303.872703.09810K562AKAP8L
HMCESENSG00000183624.91283.67780975.966000.395303.201801.62380K562DDX19B
HMCESENSG00000183624.91233.42500918.589700.425103.550202.60300K562KIF1C
HMCESENSG00000183624.9978.77280721.287100.440302.447501.62950K562NAA15
HMCESENSG00000183624.91401.38340858.435900.707008.168807.28470K562PUS1
HMCESENSG00000183624.91173.65100836.378800.488703.056002.43820K562RBM15
HMCESENSG00000183624.91041.17630776.770500.422603.858403.02950K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HMCES is not available on ENCORE database.





14 RBPs can affect the splicing of HMCES :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHMCESENSG00000183624.9chr3+129009521129009647129007696129007840129017196129017378-0.100000.001290.02578excludedK562SRSF1
SEHMCESENSG00000183624.9chr3+129009521129009647128998552128998758129017196129017378-0.180000.000180.00512excludedK562SF3B4
SEHMCESENSG00000183624.9chr3+129009521129009647129007696129007840129017196129017378-0.162000.000450.01997excludedK562PRPF8
SEHMCESENSG00000183624.9chr3+129009521129009647129007696129007840129017196129017378-0.119000.000020.00042excludedK562AQR
SEHMCESENSG00000183624.9chr3+129009521129009647128998552128998758129017196129017378-0.069000.005070.06280excludedK562PUS1
SEHMCESENSG00000183624.9chr3+1290095211290096471290076961290078401290171961290173780.105000.000560.07373includedK562LARP4
SEHMCESENSG00000183624.9chr3+129009521129009647129007696129007840129017196129017378-0.157000.000400.01206excludedHepG2SRSF1
SEHMCESENSG00000183624.9chr3+1290095211290096471290076961290078401290171961290173780.352000.000070.02656includedK562FXR2
SEHMCESENSG00000183624.9chr3+129009521129009647129007696129007840129017196129017378-0.133000.001010.06813excludedHepG2TIAL1
SEHMCESENSG00000183624.9chr3+129009521129009647128998638128998758129017196129017378-0.078000.001400.04400excludedK562UTP18
SEHMCESENSG00000183624.9chr3+129009521129009647128998552128998758129017196129017378-0.069000.002570.05559excludedK562RBM15
A3SSHMCESENSG00000183624.9chr3+1290076781290078401290076961290078401289985241289987580.118000.000000.00001longerK562AQR
A5SSHMCESENSG00000183624.9chr3+1289986381289988241289986381289987581290076961290078400.073000.000850.01618longerK562AQR
MXEHMCESENSG00000183624.9chr3+129009521129009647129017196129017378129007696129007840129020792129020985-0.138000.002770.065162includedK562UCHL5
MXEHMCESENSG00000183624.9chr3+129007696129007840129009521129009647128998552128998758129017196129017378-0.164000.000420.079632includedK562HNRNPA1
MXEHMCESENSG00000183624.9chr3+1290076781290078401290171481290173781289985241289987581290207921290209850.056000.000000.000071includedK562AQR
MXEHMCESENSG00000183624.9chr3+129009521129009647129017196129017378129007696129007840129020792129020985-0.091000.015090.087972includedK562AQR
MXEHMCESENSG00000183624.9chr3+129007696129007840129009521129009647128998552128998758129017196129017378-0.149000.001680.046462includedHepG2XRN2
MXEHMCESENSG00000183624.9chr3+129007696129007840129009521129009647128998552128998758129017196129017378-0.155000.001000.025962includedHepG2DDX55
MXEHMCESENSG00000183624.9chr3+1290076781290078401290095211290096471289985521289987581290171961290173780.123000.005780.083591includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HMCES is not avaliable on ENCORE database.