ECI1

General Information

Gene Name       : ECI1
Gene ID             : ENSG00000167969.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ECI1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ECI1ENSG00000167969.121.094.892.99ENCSR000AEF
HepG2ECI1ENSG00000167969.1255.599.5332.56ENCSR985KAT
K562ECI1ENSG00000167969.1252.1821.5336.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ECI1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ECI1 RNA is bound by 29 proteins.  







eCLIP assay for ECI1 is not avaliable on ENCORE database.





29 proteins are bound to ECI1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1622899172289977-3'-UTR,intron-Distal,intron-Proximal6.182969.89682K562LARP4
chr1622899142289974-3'-UTR,intron-Distal,intron-Proximal3.832016.54748K562PABPC4
chr1622899232289984-3'-UTR,CDS,intron-Distal,intron-Proximal4.146196.59840HepG2LARP4
chr1622899662290056-3'-UTR,CDS,intron-Distal,intron-Proximal3.625058.94272HepG2GRWD1
chr1622899422289988-3'-UTR,CDS,intron-Distal,intron-Proximal4.197759.00944K562RPS3
chr1623012912301479-5'-UTR,CDS,intron-Distal,intron-Proximal3.6033116.69454K562AQR
chr1623014462301492-5'-UTR,intron-Distal,intron-Proximal3.325647.76554K562BUD13
chr1623015292301558-5'-UTR,CDS,intron-Distal,intron-Proximal3.925966.75464HepG2SUB1
chr1623012912301372-5'-UTR,CDS,intron-Distal,intron-Proximal3.536263.79120K562GEMIN5
chr1623013622301431-5'-UTR,CDS,intron-Distal,intron-Proximal4.583806.85036HepG2RPS3
chr1623013572301424-5'-UTR,CDS,intron-Distal4.2469211.98409K562HNRNPM
chr1623015132301528-5'-UTR,CDS,intron-Distal,intron-Proximal4.031547.50590K562DDX3X
chr1623015282301581-5'-UTR,CDS,intron-Distal,intron-Proximal3.866146.97927K562DDX3X
chr1623014442301512-5'-UTR,intron-Distal,intron-Proximal3.026856.29405HepG2PRPF8
chr1623013162301468-5'-UTR,CDS,intron-Distal,intron-Proximal3.215197.05394K562DROSHA
chr1623013742301430-5'-UTR,CDS,intron-Distal3.794676.61008K562RPS3
chr1623013132301357-5'-UTR,CDS,intron-Distal,intron-Proximal4.171417.03471K562HNRNPM
chr1623013812301493-5'-UTR,CDS,intron-Distal,intron-Proximal3.196987.79169HepG2BUD13
chr1623013782301443-5'-UTR,CDS,intron-Distal,intron-Proximal3.538266.01141HepG2EFTUD2
chr1623013172301394-5'-UTR,CDS,intron-Distal3.648917.45931K562FTO
chr1623015122301556-5'-UTR,CDS,intron-Distal,intron-Proximal4.452286.85036HepG2RPS3
chr1622969032296985-5'-UTR,CDS,intron-Distal3.099115.91053HepG2LARP4
chr1622943932294459-CDS,intron-Distal,intron-Proximal3.869305.75388HepG2BUD13
chr1622930762293154-CDS,intron-Distal,intron-Proximal4.0834618.54706K562RPS3
chr1622930752293133-CDS,intron-Distal,intron-Proximal3.930706.33102HepG2LARP4
chr1622932762293325-CDS,intron-Distal,intron-Proximal4.5397211.13470HepG2PRPF8
chr1622931542293222-CDS,intron-Distal,intron-Proximal3.675993.84718K562METAP2
chr1622943372294413-CDS,intron-Distal,intron-Proximal4.5205912.48497HepG2PRPF8
chr1622931422293214-CDS,intron-Distal,intron-Proximal3.310759.91876K562YBX3
chr1622933382293369-CDS,intron-Distal,intron-Proximal4.835935.18660HepG2PPIG
chr1622944982294555-CDS,intron-Distal,intron-Proximal3.534993.82830HepG2LARP4
chr1622931532293224-CDS,intron-Distal,intron-Proximal3.310337.72793HepG2PPIG
chr1622933402293433-CDS,intron-Distal,intron-Proximal3.3118612.66953K562RPS3
chr1622934092293467-CDS,intron-Distal,intron-Proximal3.416115.75231K562AQR
chr1622930612293190-CDS,intron-Distal,intron-Proximal3.332297.49625HepG2DDX55
chr1622934372293499-CDS,intron-Distal,intron-Proximal4.7277510.00853K562SF3B4
chr1622930092293073-CDS,intron-Distal,intron-Proximal4.8446731.34674HepG2PRPF8
chr1622930332293055-CDS,intron-Distal,intron-Proximal3.8963515.81627K562PRPF8
chr1622933812293439-CDS,intron-Distal3.073675.97777HepG2PPIG
chr1622930472293180-CDS,intron-Distal,intron-Proximal4.5259610.25516HepG2G3BP1
chr1622930812293146-CDS,intron-Distal,intron-Proximal3.384415.30777HepG2PPIG
chr1622930752293124-CDS,intron-Distal,intron-Proximal4.422835.27247HepG2RPS3
chr1622934102293501-CDS,intron-Distal,intron-Proximal3.504417.96742HepG2SF3A3
chr1622944672294544-CDS,intron-Distal,intron-Proximal3.124995.03485HepG2G3BP1
chr1622931332293219-CDS,intron-Distal,intron-Proximal3.622805.63879HepG2RPS3
chr1622940822294148-intron-Distal,intron-Proximal4.033733.80512K562CSTF2T
chr1622941072294160-intron-Distal,intron-Proximal4.239274.16830K562EWSR1
chr1622938072293862-intron-Distal4.239273.86024K562EWSR1
chr1622969972297064-intron-Distal,intron-Proximal3.969434.22551K562SF3B4
chr1622943332294407-intron-Distal,intron-Proximal4.947969.56266K562AQR
chr1622930022293033-intron-Distal,intron-Proximal5.5010821.38088K562PRPF8
chr1622938982293998-intron-Distal4.673885.59467HepG2PRPF4
chr1622941182294172-intron-Distal,intron-Proximal3.737463.05512HepG2PRPF4
chr1623012382301266-intron-Distal,intron-Proximal4.184883.31283K562PRPF8
chr1623012312301285-intron-Distal,intron-Proximal4.685547.63242K562EFTUD2
chr1622940572294180-intron-Distal,intron-Proximal4.928257.04874K562EFTUD2
chr1622935212293563-intron-Distal,intron-Proximal4.861684.40745K562SF3B4
chr1622939402293980-intron-Distal4.059623.71613K562UCHL5
chr1622941122294233-intron-Distal,intron-Proximal4.554776.89952K562FUS
chr1622945602294649-intron-Distal,intron-Proximal3.072753.68313HepG2SF3B4
chr1622942522294300-intron-Distal4.473015.29191K562BUD13
chr1622938962293986-intron-Distal3.355984.20198HepG2FAM120A
chr1622943252294377-intron-Distal,intron-Proximal4.809935.00814HepG2RBM22
chr1622909932291064-intron-Distal4.491914.46422K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ECI1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ECI1 is not available on ENCORE database.

  • 89 RBPs can affect the levels of ECI1.  








The Knockdown/knockout RNA-Seq assay for ECI1 is not available on ENCORE database.





89 RBPs can affect the gene expression of ECI1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ECI1ENSG00000167969.8414.98150511.77270-0.302502.069201.52870HepG2ACO1
ECI1ENSG00000167969.8246.03580143.060700.782104.336103.11830HepG2ADAR
ECI1ENSG00000167969.8504.29160845.67640-0.745802.523302.01320HepG2AKAP1
ECI1ENSG00000167969.8622.04050868.29420-0.481202.352201.70990HepG2AUH
ECI1ENSG00000167969.8200.30250304.84060-0.605903.656302.24790HepG2BUD13
ECI1ENSG00000167969.8115.20970210.84200-0.871903.606702.74200HepG2CALR
ECI1ENSG00000167969.8243.21330146.702200.729204.307503.03920HepG2YBX3
ECI1ENSG00000167969.8459.18060302.365500.602705.095104.27100HepG2CELF1
ECI1ENSG00000167969.8714.89620489.605900.546006.061305.13270HepG2DKC1
ECI1ENSG00000167969.8258.87560144.063100.845504.793403.88990HepG2DNAJC21
ECI1ENSG00000167969.8297.48470142.772801.059009.824708.68500HepG2DNAJC2
ECI1ENSG00000167969.8495.58750307.270100.689505.107304.02090HepG2EIF4G2
ECI1ENSG00000167969.8253.89720410.92590-0.694603.833002.93870HepG2FIP1L1
ECI1ENSG00000167969.8312.62770713.31120-1.1901011.8360010.26440HepG2FUBP3
ECI1ENSG00000167969.8404.57190226.230800.838504.210302.49830HepG2HNRNPA0
ECI1ENSG00000167969.8330.72080161.772501.031501.913501.32530HepG2HNRNPC
ECI1ENSG00000167969.8594.56720296.218701.0051016.3759014.85600HepG2HNRNPL
ECI1ENSG00000167969.8248.62030160.703400.629403.904203.19550HepG2HNRNPU
ECI1ENSG00000167969.8440.88820254.883400.790503.939802.47020HepG2KHDRBS1
ECI1ENSG00000167969.8193.39480279.21530-0.529802.757101.54210HepG2NAA15
ECI1ENSG00000167969.8517.51640322.433300.682505.362404.30650HepG2NOL12
ECI1ENSG00000167969.8182.35380101.429700.846202.922601.43170HepG2NOLC1
ECI1ENSG00000167969.8401.58040683.68150-0.767602.097401.46030HepG2PABPC4
ECI1ENSG00000167969.8389.23530143.335601.441109.252907.94840HepG2PPIL4
ECI1ENSG00000167969.8470.83150744.89530-0.661809.057908.18290HepG2PTBP1
ECI1ENSG00000167969.8699.16000307.776701.1836016.9855015.68040HepG2PUF60
ECI1ENSG00000167969.8589.01430326.702000.8502012.7022011.62890HepG2PUM1
ECI1ENSG00000167969.8588.77630326.473600.850702.117601.52700HepG2PUM2
ECI1ENSG00000167969.8478.77370806.83860-0.752909.522908.46450HepG2QKI
ECI1ENSG00000167969.8339.23390436.39300-0.363302.226001.44670HepG2RBM15
ECI1ENSG00000167969.8488.93130833.31610-0.769205.291804.63280HepG2RBM22
ECI1ENSG00000167969.8486.22280732.22060-0.590702.733102.06280HepG2RBM25
ECI1ENSG00000167969.8598.87630284.117901.075705.189703.81320HepG2RBM27
ECI1ENSG00000167969.8461.04970230.718400.998705.738904.20780HepG2RCC2
ECI1ENSG00000167969.8475.83460261.993700.860804.730703.69920HepG2RPS2
ECI1ENSG00000167969.8507.63380268.570400.918404.596503.56770HepG2RPS3A
ECI1ENSG00000167969.8451.55780267.480000.755403.843602.56200HepG2RPS5
ECI1ENSG00000167969.8345.44600143.117001.2712015.3526014.01920HepG2SAFB2
ECI1ENSG00000167969.8494.60900252.896300.967604.821903.09620HepG2SART3
ECI1ENSG00000167969.8499.31430775.61510-0.635406.383405.54620HepG2SF3B4
ECI1ENSG00000167969.8678.28000295.075901.2007024.4112022.72930HepG2SLBP
ECI1ENSG00000167969.8245.41630166.904600.556103.114702.43810HepG2SMN1
ECI1ENSG00000167969.8130.23130214.54700-0.720202.565001.81370HepG2SNRNP70
ECI1ENSG00000167969.8594.02480941.15450-0.663903.752403.19580HepG2SRFBP1
ECI1ENSG00000167969.8489.57430809.54040-0.725608.191707.47780HepG2SRSF1
ECI1ENSG00000167969.8621.37550303.864801.0319016.3057014.96450HepG2SRSF5
ECI1ENSG00000167969.8342.69270658.57510-0.9424015.5553014.43700HepG2SRSF9
ECI1ENSG00000167969.81107.67430817.065700.438903.139602.60140HepG2SSB
ECI1ENSG00000167969.8392.19620233.743900.746503.821202.50900HepG2STIP1
ECI1ENSG00000167969.8630.35690345.594900.8670012.6435011.47850HepG2SUCLG1
ECI1ENSG00000167969.8259.31680727.55250-1.4883016.6517015.44330HepG2TAF15
ECI1ENSG00000167969.8412.07610668.62140-0.698303.195502.30200HepG2TIA1
ECI1ENSG00000167969.8406.23490156.175901.379004.236803.64600HepG2TIAL1
ECI1ENSG00000167969.8375.46130157.547801.2528016.0430014.83750HepG2TRIM56
ECI1ENSG00000167969.8653.24860300.657701.119406.248704.85700HepG2TUFM
ECI1ENSG00000167969.8234.87160351.47250-0.581502.947002.29980HepG2U2AF1
ECI1ENSG00000167969.8488.49080318.223700.618202.483101.69350HepG2UBE2L3
ECI1ENSG00000167969.8454.71670322.946600.493603.884503.19310HepG2UTP3
ECI1ENSG00000167969.8481.14370240.578200.999907.152605.39170HepG2XPO5
ECI1ENSG00000167969.8604.41410301.537801.003101.975201.35470HepG2XRN2
ECI1ENSG00000167969.81570.861801244.428500.336004.174803.50280K562AGGF1
ECI1ENSG00000167969.81075.858401730.31500-0.685507.850306.94590K562AQR
ECI1ENSG00000167969.81070.38360582.538900.8776010.458008.58430K562BCLAF1
ECI1ENSG00000167969.81092.62740847.932500.365703.792402.48850K562CPEB4
ECI1ENSG00000167969.8678.58780441.942800.618602.530001.52510K562CSTF2
ECI1ENSG00000167969.8688.78580510.645100.431603.351801.87950K562DDX27
ECI1ENSG00000167969.81216.65850930.075300.387403.295002.52120K562EIF2S2
ECI1ENSG00000167969.8569.78190413.767700.461503.193802.28010K562FIP1L1
ECI1ENSG00000167969.8749.186701120.34090-0.580508.476907.48940K562FXR1
ECI1ENSG00000167969.866.90650262.20700-1.9705016.4229014.34360K562G3BP2
ECI1ENSG00000167969.81804.619001239.259900.542103.098702.30110K562GRSF1
ECI1ENSG00000167969.8250.13690522.00040-1.061303.209401.86930K562HNRNPK
ECI1ENSG00000167969.8860.67040560.920400.617603.319102.44980K562HSPD1
ECI1ENSG00000167969.81079.14500523.192801.044402.412101.47280K562IGF2BP2
ECI1ENSG00000167969.8837.95210531.979200.655406.982304.95570K562IGF2BP3
ECI1ENSG00000167969.8132.40750222.82510-0.750902.118401.31350K562KRR1
ECI1ENSG00000167969.8765.28190549.412800.478003.378002.44320K562MAGOH
ECI1ENSG00000167969.8772.556301075.74910-0.477605.090703.41700K562NCBP2
ECI1ENSG00000167969.8875.75790425.210301.042304.620302.83050K562NONO
ECI1ENSG00000167969.8434.31190661.58810-0.607203.190301.85090K562PABPC1
ECI1ENSG00000167969.8758.57170537.258100.497603.807302.21360K562PCBP1
ECI1ENSG00000167969.8871.03530469.770800.890703.831502.84330K562PPIG
ECI1ENSG00000167969.8396.74240612.53010-0.626603.394401.38940K562PPIL4
ECI1ENSG00000167969.8809.79650533.822000.601103.981703.19980K562PTBP1
ECI1ENSG00000167969.81461.996801886.67890-0.367902.322301.35190K562PUM1
ECI1ENSG00000167969.8366.30640614.09970-0.745404.339402.32960K562RPS3A
ECI1ENSG00000167969.8197.40850325.20540-0.720204.544802.37970K562SND1
ECI1ENSG00000167969.8788.71770523.373200.591604.203503.33980K562SRSF1
ECI1ENSG00000167969.8575.11860325.926400.819207.745305.85720K562SRSF4
ECI1ENSG00000167969.8894.04150494.409500.854504.552603.14660K562SRSF5
ECI1ENSG00000167969.8438.48210562.26130-0.358702.383201.62160K562SYNCRIP
ECI1ENSG00000167969.8124.55070257.37590-1.047103.253201.61770K562TAF15
ECI1ENSG00000167969.8921.73060529.580900.799409.050107.67160K562TARDBP
ECI1ENSG00000167969.8174.55040273.18890-0.646303.510601.70110K562TBRG4
ECI1ENSG00000167969.8974.57540510.868600.931709.957608.28820K562TIA1
ECI1ENSG00000167969.8867.85110501.567300.790905.555103.89020K562TRA2A
ECI1ENSG00000167969.8125.38470254.01330-1.018506.157304.38490K562U2AF1
ECI1ENSG00000167969.8111.80940262.38970-1.2307010.565308.99420K562U2AF2
ECI1ENSG00000167969.8706.27510839.15390-0.248702.042401.30750K562WDR43
ECI1ENSG00000167969.8741.59400437.647900.760803.869302.34780K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ECI1 is not available on ENCORE database.





3 RBPs can affect the splicing of ECI1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEECI1ENSG00000167969.8chr16-229440622945532293318229344022968592296987-0.065000.000450.01079excludedK562SRSF1
SEECI1ENSG00000167969.8chr16-229440622945532293369229344022968592296987-0.073000.000640.03660excludedK562EFTUD2
A5SSECI1ENSG00000167969.8chr16-2293318229344022933692293440229304622932250.119000.000080.02295longerK562DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ECI1 is not avaliable on ENCORE database.