C4orf48

General Information

Gene Name       : C4orf48
Gene ID             : ENSG00000243449.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C4orf48)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C4orf48ENSG00000243449.60.000.000.00ENCSR000AEF
HepG2C4orf48ENSG00000243449.61.100.000.55ENCSR985KAT
K562C4orf48ENSG00000243449.60.870.000.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C4orf48 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C4orf48 RNA is bound by 6 proteins.  







eCLIP assay for C4orf48 is not avaliable on ENCORE database.





6 proteins are bound to C4orf48 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr420455972045679+3'-UTR,CDS6.0090314.06811K562PUM2
chr420440712044114+5'-UTR,CDS6.5314411.52303K562DDX3X
chr420437602043778+5'-UTR,CDS4.647523.28061K562DDX55
chr420437742043795+5'-UTR,CDS4.645453.99162HepG2DDX3X
chr420456092045634+CDS3.053263.02046HepG2LARP4
chr420441242044146+CDS3.4622011.95636K562YBX3
chr420445012044522+CDS3.152893.69775K562YBX3
chr420441482044201+CDS3.8097810.25575K562YBX3
chr420441142044187+CDS4.553264.01795HepG2LARP4
chr420441752044212+CDS,intron-Proximal7.2287913.82987K562PABPC4
chr420441112044124+CDS3.9003114.57262K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C4orf48 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C4orf48 is not available on ENCORE database.

  • 27 RBPs can affect the levels of C4orf48.  








The Knockdown/knockout RNA-Seq assay for C4orf48 is not available on ENCORE database.





27 RBPs can affect the gene expression of C4orf48 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C4orf48ENSG00000243449.236.5931010.333001.824203.458802.79210HepG2ACO1
C4orf48ENSG00000243449.218.858501.208503.963803.210702.64310HepG2AKAP1
C4orf48ENSG00000243449.230.9178010.390701.573002.449301.72280HepG2AKAP8L
C4orf48ENSG00000243449.221.301501.157704.201504.198203.44110HepG2DDX3X
C4orf48ENSG00000243449.215.494300.994403.961602.423301.84170HepG2DDX6
C4orf48ENSG00000243449.222.895001.072304.416202.626402.01100HepG2MATR3
C4orf48ENSG00000243449.227.897801.097604.667704.081303.31680HepG2NCBP2
C4orf48ENSG00000243449.246.7733011.614902.009604.271803.66420HepG2RBM22
C4orf48ENSG00000243449.217.473904.729801.885201.897201.33620HepG2SF3A3
C4orf48ENSG00000243449.258.4052015.077201.953606.008605.22350K562AGGF1
C4orf48ENSG00000243449.248.1086016.578401.536902.669501.70900K562AKAP8
C4orf48ENSG00000243449.282.9992015.691202.403003.541602.79930K562AKAP8L
C4orf48ENSG00000243449.264.8018016.468801.976203.274002.27400K562ATP5C1
C4orf48ENSG00000243449.226.205700.0000099999.999907.646306.02320K562BCLAF1
C4orf48ENSG00000243449.227.234204.898802.474803.623602.34980K562CPEB4
C4orf48ENSG00000243449.224.489605.496302.155502.823202.09770K562EIF2S2
C4orf48ENSG00000243449.28.1393026.47510-1.701702.361801.60170K562EIF4A3
C4orf48ENSG00000243449.27.4865027.53260-1.878802.686902.08950K562FXR1
C4orf48ENSG00000243449.218.174500.493005.204004.497403.05900K562IGF2BP2
C4orf48ENSG00000243449.213.710700.514304.736303.557402.59820K562MAGOH
C4orf48ENSG00000243449.212.249700.512704.578303.209202.21050K562MATR3
C4orf48ENSG00000243449.25.8689026.44050-2.171603.039301.75260K562NCBP2
C4orf48ENSG00000243449.225.939009.086501.513201.996801.30340K562PPIG
C4orf48ENSG00000243449.216.806900.500005.070904.720503.87520K562PTBP1
C4orf48ENSG00000243449.26.0101024.71850-2.040102.840902.01730K562SF3A3
C4orf48ENSG00000243449.29.676800.490604.301802.188001.55090K562SRSF1
C4orf48ENSG00000243449.211.142400.464404.584502.940201.85270K562SRSF5
C4orf48ENSG00000243449.217.353200.495605.129804.702403.77200K562TARDBP
C4orf48ENSG00000243449.220.561800.478305.425805.556604.33210K562TIA1
C4orf48ENSG00000243449.210.810600.471504.518802.641601.57800K562TRA2A
C4orf48ENSG00000243449.25.5005023.63110-2.103102.832201.97640K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C4orf48 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C4orf48 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C4orf48 is not avaliable on ENCORE database.