SLC39A1

General Information

Gene Name       : SLC39A1
Gene ID             : ENSG00000143570.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC39A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC39A1ENSG00000143570.1736.9143.5640.23ENCSR000AEF
HepG2SLC39A1ENSG00000143570.1763.4049.9456.67ENCSR985KAT
K562SLC39A1ENSG00000143570.1760.9148.9754.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC39A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC39A1 RNA is bound by 17 proteins.  







eCLIP assay for SLC39A1 is not avaliable on ENCORE database.





17 proteins are bound to SLC39A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1153931642153931695-3'-UTR,intron-Distal3.946147.02804HepG2FAM120A
chr1153931644153931680-3'-UTR,intron-Distal4.586097.67996K562PABPC4
chr1153931608153931637-3'-UTR,intron-Distal4.332118.27548K562UPF1
chr1153931652153931696-3'-UTR,intron-Distal3.629213.02060K562LIN28B
chr1153932211153932336-3'-UTR,intron-Distal5.8174531.47792HepG2AKAP1
chr1153932510153932571-3'-UTR,intron-Distal,intron-Proximal4.081986.31568HepG2LARP4
chr1153931641153931689-3'-UTR,intron-Distal4.9830013.37062K562UPF1
chr1153931646153931692-3'-UTR,intron-Distal3.973874.17892HepG2TIA1
chr1153932290153932352-3'-UTR,intron-Distal3.375178.01766HepG2LIN28B
chr1153932233153932276-3'-UTR,intron-Distal3.674943.90326K562DDX6
chr1153932038153932171-3'-UTR,intron-Distal,intron-Proximal6.5948426.85931HepG2UPF1
chr1153931779153931904-3'-UTR,intron-Distal7.1911537.03296K562UPF1
chr1153931917153932037-3'-UTR,intron-Distal,intron-Proximal3.487069.58084K562FAM120A
chr1153931942153932044-3'-UTR,intron-Distal,intron-Proximal3.7047817.96067K562UPF1
chr1153932361153932460-3'-UTR,intron-Distal5.2322720.40376HepG2AKAP1
chr1153932229153932245-3'-UTR,intron-Distal6.9471067.25615HepG2GRSF1
chr1153932191153932284-3'-UTR,intron-Distal5.4368340.12871K562UPF1
chr1153932290153932359-3'-UTR,intron-Distal4.548984.78556K562LIN28B
chr1153932151153932193-3'-UTR,intron-Distal5.7841524.95541HepG2GRSF1
chr1153932223153932324-3'-UTR,intron-Distal4.7293910.89654HepG2LARP4
chr1153931601153931642-3'-UTR,intron-Distal5.3958915.66634K562PABPC4
chr1153932502153932538-3'-UTR,intron-Distal,intron-Proximal3.532004.77155HepG2AKAP1
chr1153932571153932626-3'-UTR,CDS,intron-Distal,intron-Proximal3.714225.47244HepG2LARP4
chr1153931701153931735-3'-UTR,intron-Distal5.4112710.00893K562UPF1
chr1153931697153931736-3'-UTR,intron-Distal4.640505.93974HepG2UPF1
chr1153932030153932155-3'-UTR,intron-Distal,intron-Proximal3.9539913.00879HepG2PCBP2
chr1153935149153935195-3'-UTR,5'-UTR,CDS,intron-Distal5.0518139.97765HepG2DDX3X
chr1153935195153935223-3'-UTR,5'-UTR,intron-Distal4.5823724.61804HepG2DDX3X
chr1153931890153931905-3'-UTR,intron-Distal4.016224.02104HepG2TIA1
chr1153932348153932415-3'-UTR,intron-Distal3.581086.51761HepG2FAM120A
chr1153931606153931645-3'-UTR,intron-Distal4.795976.37221HepG2LARP4
chr1153931931153932054-3'-UTR,intron-Distal,intron-Proximal4.1537217.98222HepG2AKAP1
chr1153932214153932279-3'-UTR,intron-Distal4.221359.67707K562FAM120A
chr1153931889153932038-3'-UTR,intron-Distal,intron-Proximal4.8031224.73684HepG2UPF1
chr1153932284153932355-3'-UTR,intron-Distal5.8977922.95334K562UPF1
chr1153931799153931899-3'-UTR,intron-Distal3.7273310.55936HepG2LARP4
chr1153932350153932459-3'-UTR,intron-Distal7.0492234.10504HepG2UPF1
chr1153931922153931958-3'-UTR,intron-Distal4.690444.29728HepG2FAM120A
chr1153931802153931843-3'-UTR,intron-Distal3.748485.29636HepG2AKAP1
chr1153932370153932433-3'-UTR,intron-Distal3.088455.14024HepG2LARP4
chr1153931867153931890-3'-UTR,intron-Distal4.150634.43128HepG2TIA1
chr1153932056153932164-3'-UTR,intron-Distal,intron-Proximal6.1169617.01531HepG2AKAP1
chr1153931777153931902-3'-UTR,intron-Distal3.5083315.33403K562FAM120A
chr1153931645153931686-3'-UTR,intron-Distal3.651464.91517HepG2LARP4
chr1153931853153931904-3'-UTR,intron-Distal3.583696.90818HepG2AKAP1
chr1153931831153931889-3'-UTR,intron-Distal3.856453.14867K562DDX55
chr1153932355153932497-3'-UTR,intron-Distal,intron-Proximal5.4474123.41221K562UPF1
chr1153932245153932306-3'-UTR,intron-Distal6.0798456.19508HepG2GRSF1
chr1153932179153932350-3'-UTR,intron-Distal6.6806451.13672HepG2UPF1
chr1153932221153932229-3'-UTR,intron-Distal6.8898965.47018HepG2GRSF1
chr1153935033153935114-5'-UTR,CDS,intron-Distal5.0897111.93472HepG2RPS3
chr1153935114153935165-5'-UTR,CDS,intron-Distal4.067596.43771HepG2RPS3
chr1153935012153935045-5'-UTR,CDS,intron-Distal3.5849517.70968HepG2DDX3X
chr1153935045153935104-5'-UTR,CDS,intron-Distal3.6853639.63669HepG2DDX3X
chr1153935104153935149-5'-UTR,CDS,intron-Distal4.2487125.42410HepG2DDX3X
chr1153935971153936003-5'-UTR,intron-Distal,intron-Proximal3.555507.12467HepG2DDX3X
chr1153935104153935184-5'-UTR,CDS,intron-Distal3.882114.46401K562DDX3X
chr1153932910153933077-CDS,intron-Distal,intron-Proximal5.9459910.19327K562SND1
chr1153934772153934907-CDS,intron-Distal,intron-Proximal4.042723.44423K562BUD13
chr1153932857153932912-CDS,intron-Distal,intron-Proximal3.802409.20947HepG2SND1
chr1153932755153932804-CDS,intron-Distal,intron-Proximal4.0633813.20660HepG2SND1
chr1153932845153932905-CDS,intron-Distal,intron-Proximal3.710454.68317K562SND1
chr1153934659153934740-CDS,intron-Distal,intron-Proximal3.9198515.73783HepG2PRPF8
chr1153933091153933155-CDS,intron-Distal3.856628.29064HepG2SND1
chr1153932758153932845-CDS,intron-Distal,intron-Proximal3.847476.79756K562SND1
chr1153933077153933157-CDS,intron-Distal4.878974.57227K562SND1
chr1153932912153933014-CDS,intron-Distal,intron-Proximal4.0492314.90028HepG2SND1
chr1153932804153932857-CDS,intron-Distal,intron-Proximal3.416708.60544HepG2SND1
chr1153933987153934122-intron-Distal4.156453.87294K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC39A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC39A1 is not available on ENCORE database.

  • 90 RBPs can affect the levels of SLC39A1.  








The Knockdown/knockout RNA-Seq assay for SLC39A1 is not available on ENCORE database.





90 RBPs can affect the gene expression of SLC39A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC39A1ENSG00000143570.132016.623301767.604400.190002.114101.56840HepG2ACO1
SLC39A1ENSG00000143570.131243.074001580.79070-0.346702.588901.62280HepG2ADAR
SLC39A1ENSG00000143570.13908.095401802.23870-0.9889020.0787017.17850HepG2BUD13
SLC39A1ENSG00000143570.131474.632801767.14060-0.261103.609002.86690HepG2CKAP4
SLC39A1ENSG00000143570.13953.465401572.11910-0.721509.410108.21420HepG2CPSF6
SLC39A1ENSG00000143570.131219.955501623.31660-0.412105.479003.90170HepG2DDX1
SLC39A1ENSG00000143570.131042.964601418.32700-0.443502.846901.54180HepG2DDX27
SLC39A1ENSG00000143570.131990.258702620.45160-0.396903.222302.55370HepG2DDX3X
SLC39A1ENSG00000143570.131078.135701807.03590-0.7451010.177108.38870HepG2DDX5
SLC39A1ENSG00000143570.131674.715202251.52890-0.427003.156802.50110HepG2DDX6
SLC39A1ENSG00000143570.131211.117501535.24930-0.342102.861401.86580HepG2DHX30
SLC39A1ENSG00000143570.131242.580401691.09780-0.444607.245606.24600HepG2DKC1
SLC39A1ENSG00000143570.13934.881101327.50240-0.505906.035404.52860HepG2EIF3G
SLC39A1ENSG00000143570.131331.499202328.60570-0.806407.707206.58920HepG2EIF4B
SLC39A1ENSG00000143570.131517.554202244.13540-0.5644012.2639010.75220HepG2EIF4G1
SLC39A1ENSG00000143570.131474.829702083.70710-0.498605.349503.87910HepG2ESF1
SLC39A1ENSG00000143570.132426.176603027.41110-0.319405.137904.36440HepG2ETF1
SLC39A1ENSG00000143570.132119.750101727.194600.295402.633701.81860HepG2EWSR1
SLC39A1ENSG00000143570.131011.442901339.65740-0.405403.876902.55530HepG2FASTKD2
SLC39A1ENSG00000143570.131007.040501574.89930-0.645102.483901.52530HepG2FTO
SLC39A1ENSG00000143570.131227.858301798.56580-0.550707.236406.00390HepG2FUBP3
SLC39A1ENSG00000143570.131527.810402376.77890-0.637507.721506.21700HepG2G3BP2
SLC39A1ENSG00000143570.131416.621001687.50790-0.252402.962901.95550HepG2HDGF
SLC39A1ENSG00000143570.131335.060201606.98110-0.267401.992401.43350HepG2HNRNPA1
SLC39A1ENSG00000143570.132482.302802071.936200.260604.491703.64940HepG2HNRNPL
SLC39A1ENSG00000143570.131255.657201700.61200-0.437603.834503.10360HepG2HNRNPLL
SLC39A1ENSG00000143570.131922.732302300.50130-0.258802.366301.69420HepG2IGF2BP1
SLC39A1ENSG00000143570.13637.600802275.07440-1.8352048.4508046.04340HepG2IGF2BP2
SLC39A1ENSG00000143570.131512.431801813.79800-0.262104.071503.19930HepG2ILF2
SLC39A1ENSG00000143570.131345.440102288.59370-0.766407.607005.86050HepG2KHSRP
SLC39A1ENSG00000143570.131303.374401734.64960-0.412402.151001.30560HepG2MTPAP
SLC39A1ENSG00000143570.131652.417602484.65170-0.588506.028805.11080HepG2NCBP2
SLC39A1ENSG00000143570.133014.794102255.484700.418506.502905.33850HepG2NOL12
SLC39A1ENSG00000143570.131134.152501507.99960-0.411003.587602.73590HepG2NSUN2
SLC39A1ENSG00000143570.131732.444802212.29710-0.352702.594201.89300HepG2PABPC4
SLC39A1ENSG00000143570.13742.178501527.90450-1.0417010.472008.63270HepG2PCBP2
SLC39A1ENSG00000143570.131363.018101836.46580-0.430107.078405.90910HepG2PRPF4
SLC39A1ENSG00000143570.13739.799201168.98270-0.660004.710103.68680HepG2PRPF8
SLC39A1ENSG00000143570.131906.151202219.63050-0.219702.497301.97350HepG2PTBP1
SLC39A1ENSG00000143570.131424.879801800.40810-0.337505.237004.43830HepG2PUS1
SLC39A1ENSG00000143570.131651.187802403.99100-0.541909.556308.49590HepG2QKI
SLC39A1ENSG00000143570.131982.635801474.207300.427401.925501.32700HepG2RAVER1
SLC39A1ENSG00000143570.132566.811802156.519900.251202.410501.60380HepG2RBM15
SLC39A1ENSG00000143570.132896.234102530.359800.194702.023701.56230HepG2RBM22
SLC39A1ENSG00000143570.131469.045102181.74750-0.570608.456407.32670HepG2RBM25
SLC39A1ENSG00000143570.131013.448501315.56840-0.376402.518601.50750HepG2RCC2
SLC39A1ENSG00000143570.132035.738502470.26540-0.279103.826203.21000HepG2NELFE
SLC39A1ENSG00000143570.131677.650802300.66260-0.455608.922407.91000HepG2RECQL
SLC39A1ENSG00000143570.132050.222202516.58570-0.295702.529701.87190HepG2RPLP0
SLC39A1ENSG00000143570.13913.816201156.30610-0.339502.381501.64590HepG2RRP9
SLC39A1ENSG00000143570.132681.466701873.374900.517302.574301.92340HepG2SF3A3
SLC39A1ENSG00000143570.13746.937501683.20490-1.1722023.2697021.45360HepG2SF3B1
SLC39A1ENSG00000143570.131694.244102064.56950-0.285204.277803.43310HepG2SLBP
SLC39A1ENSG00000143570.133180.785502857.955900.154301.793401.36360HepG2SRFBP1
SLC39A1ENSG00000143570.131942.333702412.14290-0.312504.904804.32130HepG2SRSF1
SLC39A1ENSG00000143570.132266.906401962.384200.208002.418901.89570HepG2SRSF9
SLC39A1ENSG00000143570.131435.684702481.39570-0.7894025.8742024.66340HepG2SSB
SLC39A1ENSG00000143570.13654.980001520.68730-1.215204.701303.22900HepG2STIP1
SLC39A1ENSG00000143570.132897.755402417.710700.261204.467003.71220HepG2SUCLG1
SLC39A1ENSG00000143570.131090.963802168.05540-0.9908029.4961027.92040HepG2TAF15
SLC39A1ENSG00000143570.132189.161801740.843600.330505.176104.45390HepG2TRIM56
SLC39A1ENSG00000143570.131665.635402077.77520-0.319002.238701.66800HepG2U2AF1
SLC39A1ENSG00000143570.13654.37750891.37050-0.445902.942402.16260HepG2UCHL5
SLC39A1ENSG00000143570.132231.095601604.013500.476009.635608.62760HepG2UTP3
SLC39A1ENSG00000143570.131191.113201485.58090-0.318701.987301.36510HepG2XRN2
SLC39A1ENSG00000143570.131593.303001812.34870-0.185802.022001.43430HepG2ZC3H8
SLC39A1ENSG00000143570.132146.942401827.218700.232503.454102.86210HepG2ZNF622
SLC39A1ENSG00000143570.13969.000801331.72620-0.458704.357902.83530K562AARS
SLC39A1ENSG00000143570.132588.131601521.876800.7660020.2499018.83170K562AGGF1
SLC39A1ENSG00000143570.132107.264601672.350500.333403.073902.02460K562AKAP8
SLC39A1ENSG00000143570.132441.878001583.591200.624709.255407.97980K562AKAP8L
SLC39A1ENSG00000143570.132614.596202099.769600.316302.494101.93040K562AQR
SLC39A1ENSG00000143570.132139.432201661.586000.364604.965703.70450K562ATP5C1
SLC39A1ENSG00000143570.131021.654101678.14460-0.716008.072005.64870K562BUD13
SLC39A1ENSG00000143570.132165.264901818.696000.251502.394201.31230K562CCDC124
SLC39A1ENSG00000143570.131741.360602125.16130-0.287403.442902.08970K562DDX21
SLC39A1ENSG00000143570.132277.202402731.57710-0.262502.889301.93090K562EIF4G2
SLC39A1ENSG00000143570.13834.924101265.12910-0.599605.641903.91980K562FKBP4
SLC39A1ENSG00000143570.131591.835401284.938600.308903.524002.85360K562FXR1
SLC39A1ENSG00000143570.133113.877102485.982800.324803.278602.45830K562GRSF1
SLC39A1ENSG00000143570.132538.027302057.987400.302402.846501.77160K562HNRNPL
SLC39A1ENSG00000143570.132023.711601424.539100.506404.518903.30760K562HNRNPM
SLC39A1ENSG00000143570.13727.203701181.02410-0.699606.318604.49650K562IGF2BP2
SLC39A1ENSG00000143570.13694.163801060.88680-0.611905.726603.58250K562ILF3
SLC39A1ENSG00000143570.132352.997301680.553300.485506.135604.79870K562KIF1C
SLC39A1ENSG00000143570.131986.807901319.603300.590204.816903.55080K562NAA15
SLC39A1ENSG00000143570.132529.198001966.088900.363303.250902.34940K562PPIG
SLC39A1ENSG00000143570.131722.430901306.470000.398703.997502.88350K562PSIP1
SLC39A1ENSG00000143570.132773.397001570.421300.8204010.128309.13520K562PUS1
SLC39A1ENSG00000143570.132567.643501530.194200.7466015.3322013.92150K562RBM15
SLC39A1ENSG00000143570.13968.770901192.01570-0.299202.478001.54410K562RCC2
SLC39A1ENSG00000143570.132453.074202079.969000.237902.649701.85090K562SF3A3
SLC39A1ENSG00000143570.13950.239601247.95620-0.393202.487001.56690K562SF3B1
SLC39A1ENSG00000143570.131561.215401182.014200.401304.080903.22870K562SRSF1
SLC39A1ENSG00000143570.131601.429501896.48200-0.244002.539101.42150K562SRSF7
SLC39A1ENSG00000143570.13601.392801831.74980-1.6068014.5582011.19730K562STIP1
SLC39A1ENSG00000143570.131721.985401414.335900.283802.578001.78750K562SYNCRIP
SLC39A1ENSG00000143570.131465.926101196.217900.293201.976801.37090K562TARDBP
SLC39A1ENSG00000143570.131296.94290909.713700.511504.038902.66850K562U2AF1
SLC39A1ENSG00000143570.131588.851001912.40820-0.267402.265001.47300K562WDR3
SLC39A1ENSG00000143570.131726.704101988.72190-0.203802.355601.57010K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC39A1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SLC39A1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SLC39A1 is not avaliable on ENCORE database.