FBXO38

General Information

Gene Name       : FBXO38
Gene ID             : ENSG00000145868.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FBXO38)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FBXO38ENSG00000145868.1625.2330.3727.80ENCSR000AEF
HepG2FBXO38ENSG00000145868.1617.1822.5019.84ENCSR985KAT
K562FBXO38ENSG00000145868.1620.4721.8121.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FBXO38 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FBXO38 RNA is bound by 16 proteins.  







eCLIP assay for FBXO38 is not avaliable on ENCORE database.





16 proteins are bound to FBXO38 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5147822177147822252+3'-UTR4.6829910.49523K562PUM2
chr5147774306147774365+5'-UTR,CDS4.054105.79432HepG2BCLAF1
chr5147774262147774325+5'-UTR,intron-Proximal3.227573.16095HepG2U2AF2
chr5147763544147763674+5'-UTR,intron-Proximal4.464234.78731HepG2NCBP2
chr5147774236147774303+5'-UTR,intron-Proximal3.272783.09957HepG2AQR
chr5147763600147763692+5'-UTR,intron-Proximal3.076583.80339HepG2PRPF4
chr5147806813147806887+CDS,intron-Distal3.574596.06436HepG2BCLAF1
chr5147774382147774468+CDS,intron-Proximal3.443305.11891HepG2GRWD1
chr5147803568147803618+CDS4.704305.68196HepG2BCLAF1
chr5147774421147774524+CDS,intron-Proximal5.056306.69228HepG2PRPF8
chr5147778646147778706+CDS,intron-Distal,intron-Proximal4.172743.01090HepG2CDC40
chr5147774461147774525+CDS,intron-Proximal4.170876.35873K562PRPF8
chr5147781555147781710+CDS,intron-Distal,intron-Proximal3.175385.74981HepG2GRWD1
chr5147805084147805177+CDS,intron-Proximal3.351883.66187K562ZNF622
chr5147774451147774469+CDS,intron-Proximal5.023407.05570HepG2BCLAF1
chr5147778647147778696+CDS,intron-Distal,intron-Proximal3.344365.79905HepG2BCLAF1
chr5147796545147796593+CDS,intron-Proximal4.997843.78571K562GPKOW
chr5147793774147793869+CDS,intron-Distal3.033763.40321HepG2GRWD1
chr5147805160147805224+CDS3.819343.60441HepG2GRWD1
chr5147793680147793751+CDS,intron-Distal,intron-Proximal4.4043912.90217HepG2U2AF2
chr5147803656147803685+CDS,intron-Proximal3.241304.74886HepG2BCLAF1
chr5147793699147793766+CDS,intron-Distal3.261623.55800HepG2BCLAF1
chr5147785857147785917+CDS,intron-Distal3.206114.56058HepG2BCLAF1
chr5147778559147778647+CDS,intron-Distal,intron-Proximal4.3006213.80747HepG2BCLAF1
chr5147781566147781622+CDS,intron-Distal3.241306.19339HepG2BCLAF1
chr5147774374147774451+CDS5.346597.39496HepG2BCLAF1
chr5147793684147793753+CDS,intron-Distal,intron-Proximal4.124894.49508K562U2AF2
chr5147791768147791877+intron-Distal4.1144515.08123HepG2U2AF2
chr5147809319147809441+intron-Distal3.796326.98930HepG2U2AF2
chr5147809207147809273+intron-Distal3.301914.13575K562KHSRP
chr5147788842147788899+intron-Distal,intron-Proximal3.959323.26999K562KHSRP
chr5147791757147791825+intron-Distal4.223783.47043HepG2KHSRP
chr5147791617147791686+intron-Distal5.1385712.94604HepG2U2AF2
chr5147767268147767284+intron-Distal3.465186.79980HepG2SUGP2
chr5147811276147811373+intron-Distal4.648705.37406HepG2HNRNPM
chr5147810522147810675+intron-Distal4.1857310.33445HepG2U2AF2
chr5147811384147811507+intron-Distal4.247673.62366HepG2HNRNPM
chr5147778844147778958+intron-Distal3.931033.25538K562KHSRP
chr5147793869147794018+intron-Distal,intron-Proximal3.546343.93901K562KHSRP
chr5147809321147809428+intron-Distal4.561216.27552K562KHSRP
chr5147778264147778362+intron-Distal3.211363.05068HepG2U2AF2
chr5147767874147767965+intron-Distal3.122294.18137HepG2SUGP2
chr5147806098147806274+intron-Distal3.902563.16986HepG2QKI
chr5147791509147791572+intron-Distal4.870277.72109HepG2U2AF2
chr5147797845147797942+intron-Distal3.953773.39864HepG2SUGP2
chr5147790533147790592+intron-Distal3.632584.33990HepG2QKI
chr5147763626147763736+intron-Distal,intron-Proximal3.660203.15220HepG2HNRNPU
chr5147791509147791554+intron-Distal4.166043.47043HepG2KHSRP
chr5147791915147791979+intron-Distal3.114456.18258HepG2U2AF2
chr5147802099147802166+intron-Distal4.381215.35792HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FBXO38 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FBXO38 is not available on ENCORE database.

  • 48 RBPs can affect the levels of FBXO38.  








The Knockdown/knockout RNA-Seq assay for FBXO38 is not available on ENCORE database.





48 RBPs can affect the gene expression of FBXO38 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FBXO38ENSG00000145868.121148.04950890.221500.366803.191802.36880HepG2CALR
FBXO38ENSG00000145868.12656.83340852.10140-0.375503.530402.37910HepG2YBX3
FBXO38ENSG00000145868.12656.36030853.31450-0.378603.322202.05360HepG2DDX1
FBXO38ENSG00000145868.12825.133501107.45220-0.424502.626302.02460HepG2DDX6
FBXO38ENSG00000145868.12649.81660836.73390-0.364703.324402.55830HepG2DNAJC21
FBXO38ENSG00000145868.12858.682001064.69910-0.310201.830901.33560HepG2EIF2S1
FBXO38ENSG00000145868.121676.128101220.099400.458007.716106.44860HepG2EIF4G1
FBXO38ENSG00000145868.12858.347201114.97690-0.377402.704602.01410HepG2HNRNPK
FBXO38ENSG00000145868.12957.293301126.48970-0.234802.330601.70440HepG2HNRNPL
FBXO38ENSG00000145868.12728.50630933.40020-0.357603.817503.11610HepG2HNRNPU
FBXO38ENSG00000145868.12697.16230904.07290-0.374902.413201.35820HepG2LARP7
FBXO38ENSG00000145868.12916.064801187.49530-0.374402.483801.86170HepG2MAGOH
FBXO38ENSG00000145868.12935.303201194.16020-0.352502.018601.47480HepG2MATR3
FBXO38ENSG00000145868.12953.880201222.30460-0.357702.221601.65160HepG2NCBP2
FBXO38ENSG00000145868.12762.62170970.24680-0.347403.907903.20030HepG2PUS1
FBXO38ENSG00000145868.12804.792301090.13090-0.437802.892801.87790HepG2RBM27
FBXO38ENSG00000145868.12649.89340831.24390-0.355103.690802.96610HepG2SAFB2
FBXO38ENSG00000145868.12759.36940969.38720-0.352304.300903.53030HepG2SMN1
FBXO38ENSG00000145868.121085.46790758.066700.517804.291503.47490HepG2SUPV3L1
FBXO38ENSG00000145868.12787.002201027.15960-0.384204.114003.45150HepG2TAF15
FBXO38ENSG00000145868.12671.97290915.07640-0.445505.457404.71670HepG2TRIM56
FBXO38ENSG00000145868.121311.15190872.636100.587305.962805.05720HepG2U2AF1
FBXO38ENSG00000145868.12765.430201075.70170-0.490907.332706.28650HepG2UPF1
FBXO38ENSG00000145868.12551.13040746.23130-0.437202.131301.48790HepG2XRN2
FBXO38ENSG00000145868.121395.327901183.071900.238002.818902.26850HepG2ZNF622
FBXO38ENSG00000145868.121746.534801293.864600.432703.911403.23780K562AQR
FBXO38ENSG00000145868.121053.858201372.36190-0.381004.441003.01900K562CPEB4
FBXO38ENSG00000145868.12527.15250754.30840-0.516903.623501.67770K562DDX51
FBXO38ENSG00000145868.12622.47820784.85740-0.334402.910501.66530K562EIF2S1
FBXO38ENSG00000145868.12868.424001032.29130-0.249402.066701.42910K562EIF2S2
FBXO38ENSG00000145868.12506.14390672.27230-0.409503.499902.17560K562EIF4B
FBXO38ENSG00000145868.121448.370101765.15620-0.285402.825801.87790K562EIF4G2
FBXO38ENSG00000145868.12926.873301375.54200-0.569606.815105.61960K562GRSF1
FBXO38ENSG00000145868.12761.98790968.74110-0.346302.805701.72750K562HNRNPA1
FBXO38ENSG00000145868.12868.820901283.32720-0.562806.734305.01380K562HNRNPL
FBXO38ENSG00000145868.12997.239701266.57520-0.344902.575601.80560K562HSPD1
FBXO38ENSG00000145868.12711.907201020.27380-0.519203.629502.39170K562IGF2BP2
FBXO38ENSG00000145868.12579.18170791.91960-0.451302.380901.52410K562KRR1
FBXO38ENSG00000145868.12765.236801070.18560-0.483905.008903.72240K562MATR3
FBXO38ENSG00000145868.12528.76810758.37530-0.520303.282501.68070K562NUSAP1
FBXO38ENSG00000145868.12888.26480679.719500.386002.617501.88750K562PRPF8
FBXO38ENSG00000145868.12533.45880690.66100-0.372602.194901.39740K562PSIP1
FBXO38ENSG00000145868.12830.999501041.84790-0.326202.671402.01700K562PTBP1
FBXO38ENSG00000145868.122795.929901925.944100.537706.863305.57600K562PUF60
FBXO38ENSG00000145868.121650.556302007.17460-0.282202.835701.86440K562PUM2
FBXO38ENSG00000145868.12752.845501026.37410-0.447103.391902.79960K562PUS1
FBXO38ENSG00000145868.121277.709701049.225300.284102.642901.84530K562SF3A3
FBXO38ENSG00000145868.12818.445501021.34920-0.319502.427001.75720K562SRSF1
FBXO38ENSG00000145868.12767.62050964.56480-0.329502.241001.31590K562SRSF5
FBXO38ENSG00000145868.12717.42640997.10710-0.474904.787503.66620K562TIA1
FBXO38ENSG00000145868.12691.99830978.41220-0.499704.415502.97920K562TRA2A
FBXO38ENSG00000145868.12497.76800705.66260-0.503503.908602.74550K562TRIM56
FBXO38ENSG00000145868.12999.00270770.353300.374903.384402.49890K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FBXO38 is not available on ENCORE database.





15 RBPs can affect the splicing of FBXO38 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFBXO38ENSG00000145868.12chr5+1477948031477949501477936981477938691477954901477956330.186000.000900.01927includedK562SRSF1
SEFBXO38ENSG00000145868.12chr5+147806775147807510147805084147805264147812986147813087-0.315000.000020.00091excludedK562SRSF1
SEFBXO38ENSG00000145868.12chr5+1477771811477772391477742761477744671477785611477786950.118000.000120.01598includedK562XRCC6
SEFBXO38ENSG00000145868.12chr5+1478067751478075101478050841478052641478129861478130870.240000.000000.00000includedHepG2U2AF2
SEFBXO38ENSG00000145868.12chr5+147819209147819355147817894147818061147819986147820090-0.099000.002160.02341excludedK562AQR
SEFBXO38ENSG00000145868.12chr5+1478067751478075101478050841478052641478129861478130870.234000.000010.00176includedHepG2SFPQ
SEFBXO38ENSG00000145868.12chr5+1477771811477772391477742761477744671477785611477786950.114000.001930.07359includedHepG2SFPQ
SEFBXO38ENSG00000145868.12chr5+1478067751478075101478050841478052641478129861478130870.182000.000760.08691includedK562LARP4
SEFBXO38ENSG00000145868.12chr5+1477948031477949501477936981477938691477954901477956330.167000.000060.00430includedHepG2MATR3
SEFBXO38ENSG00000145868.12chr5+1477906421477908011477901971477903281477936981477938690.347000.000000.00016includedK562HNRNPL
SEFBXO38ENSG00000145868.12chr5+1477948031477949501477936981477938691477954901477956330.202000.000030.00371includedK562HNRNPL
SEFBXO38ENSG00000145868.12chr5+147806775147807510147805084147805264147812986147813087-0.228000.000910.02349excludedHepG2SRSF1
SEFBXO38ENSG00000145868.12chr5+147806775147807510147805084147805264147812986147813087-0.326000.000000.00000excludedHepG2SF3A3
SEFBXO38ENSG00000145868.12chr5+1477948031477949501477936981477938691477954901477956330.125000.002130.07162includedK562SF3B1
SEFBXO38ENSG00000145868.12chr5+1477906421477908011477901971477903281477936981477938690.291000.000140.00975includedK562HNRNPK
SEFBXO38ENSG00000145868.12chr5+147806775147807510147805084147805264147812986147813087-0.510000.000000.00000excludedHepG2HNRNPC
SEFBXO38ENSG00000145868.12chr5+147806775147807510147805084147805264147812986147813087-0.219000.003360.09826excludedK562PTBP1
A3SSFBXO38ENSG00000145868.12chr5+147817894147818061147817968147818061147813197147813300-0.134000.000190.08285shorterK562CPSF6
A3SSFBXO38ENSG00000145868.12chr5+147778561147778695147778577147778695147774274147774467-0.185000.002520.05520shorterHepG2U2AF2
A3SSFBXO38ENSG00000145868.12chr5+1478131751478133001478131971478133001478129861478130870.195000.000100.00084longerK562AQR
A3SSFBXO38ENSG00000145868.12chr5+1478050551478052641478050841478052641478034761478036800.100000.003280.01994longerK562AQR
A3SSFBXO38ENSG00000145868.12chr5+1478191831478193551478192091478193551478178941478180610.208000.000000.00000longerK562AQR
A3SSFBXO38ENSG00000145868.12chr5+1478206301478208081478206861478208081478199861478200900.242000.000000.00000longerK562AQR
A3SSFBXO38ENSG00000145868.12chr5+1477858011477859571477858191477859571477841951477843850.064000.003120.01907longerK562AQR
A3SSFBXO38ENSG00000145868.12chr5+147817894147818061147817968147818061147813197147813300-0.141000.000060.05349shorterK562FMR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FBXO38 is not avaliable on ENCORE database.