XPA

General Information

Gene Name       : XPA
Gene ID             : ENSG00000136936.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: XPA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878XPAENSG00000136936.109.899.919.90ENCSR000AEF
HepG2XPAENSG00000136936.106.1610.488.32ENCSR985KAT
K562XPAENSG00000136936.108.909.479.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for XPA is not avaliable on ENCORE database.



Proteins bound to RNA
  • XPA RNA is bound by 4 proteins.  







eCLIP assay for XPA is not avaliable on ENCORE database.





4 proteins are bound to XPA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9100437769100437868-3'-UTR,CDS,intron-Distal4.464345.49297K562GRWD1
chr9100437753100437831-3'-UTR,CDS,intron-Distal4.099806.68017K562UCHL5
chr9100437746100437798-3'-UTR,CDS,intron-Distal3.698864.09885HepG2BCLAF1
chr9100437741100437830-3'-UTR,CDS,intron-Distal4.546954.21087HepG2GRWD1
chr9100437780100437867-3'-UTR,CDS,intron-Distal4.548047.93948K562ZNF622
chr9100459535100459586-5'-UTR,CDS,intron-Distal,intron-Proximal3.644364.82082K562ZNF622
chr9100455929100455982-CDS,intron-Distal,intron-Proximal3.725085.03335K562UCHL5
chr9100455930100456019-CDS,intron-Distal,intron-Proximal5.406848.87880K562ZNF622
chr9100451815100451914-CDS,intron-Distal,intron-Proximal4.8598211.99174HepG2BCLAF1
chr9100447264100447301-CDS,intron-Distal4.305353.45943HepG2BCLAF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for XPA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for XPA is not available on ENCORE database.

  • 44 RBPs can affect the levels of XPA.  








The Knockdown/knockout RNA-Seq assay for XPA is not available on ENCORE database.





44 RBPs can affect the gene expression of XPA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
XPAENSG00000136936.6181.75270117.299200.631702.340701.48090HepG2BCCIP
XPAENSG00000136936.6171.1920090.978400.911904.282103.45630HepG2DDX21
XPAENSG00000136936.6154.2876089.199600.790403.277502.28030HepG2DDX24
XPAENSG00000136936.6209.51670142.225900.558802.275401.35790HepG2DDX5
XPAENSG00000136936.683.62740166.46860-0.993204.021403.28800HepG2DDX6
XPAENSG00000136936.6232.63200130.226900.836902.881902.19110HepG2DKC1
XPAENSG00000136936.6178.3856086.028001.052005.837504.35410HepG2EIF3G
XPAENSG00000136936.6266.06830176.935400.588502.666402.03840HepG2EIF4A3
XPAENSG00000136936.6230.49230153.921500.582402.709401.62880HepG2ESF1
XPAENSG00000136936.6198.47030132.983200.577602.370501.59840HepG2EWSR1
XPAENSG00000136936.6142.9454077.507000.883003.221102.53060HepG2HNRNPA1
XPAENSG00000136936.6146.2032086.211700.761902.574901.90370HepG2HNRNPC
XPAENSG00000136936.6132.3270085.641800.627602.252801.70010HepG2HNRNPU
XPAENSG00000136936.6300.47270178.505800.751204.151603.35090HepG2MAGOH
XPAENSG00000136936.6143.8731089.030400.692302.570301.79050HepG2PRPF8
XPAENSG00000136936.6271.90300113.604401.259006.319605.27820HepG2RAVER1
XPAENSG00000136936.6293.46180211.969700.469202.151801.67970HepG2RBM22
XPAENSG00000136936.6236.96530173.974400.445701.852401.39010HepG2NELFE
XPAENSG00000136936.6239.47090162.034700.563402.774602.15720HepG2RECQL
XPAENSG00000136936.6213.52050150.830400.501302.105201.49960HepG2RPLP0
XPAENSG00000136936.6205.68330111.568500.882403.797302.69020HepG2RPS10
XPAENSG00000136936.6197.45920130.274400.599902.270301.54040HepG2RPS2
XPAENSG00000136936.6194.03410124.205100.643502.312801.57920HepG2RPS3A
XPAENSG00000136936.6229.07140169.879800.431201.697601.30150HepG2SRSF1
XPAENSG00000136936.6329.42020188.225300.807404.218602.95470HepG2SRSF3
XPAENSG00000136936.6485.75440207.838001.2247018.3693017.29650HepG2SSB
XPAENSG00000136936.6203.6612083.218701.291109.028508.21690HepG2TIAL1
XPAENSG00000136936.6236.46110153.487400.623402.711802.08850HepG2U2AF1
XPAENSG00000136936.6160.43230105.192900.608802.195401.30700HepG2UPF2
XPAENSG00000136936.6245.00430113.023601.116106.960405.82220HepG2XRN2
XPAENSG00000136936.6168.88850109.918200.619502.748202.07800HepG2ZC3H8
XPAENSG00000136936.6237.29870389.39150-0.714504.349803.64610K562AQR
XPAENSG00000136936.6809.94100379.796701.0925022.4142020.74070K562DDX47
XPAENSG00000136936.6286.83630202.289200.503702.665501.88190K562EIF3G
XPAENSG00000136936.6315.17270194.589700.695603.553902.72920K562G3BP2
XPAENSG00000136936.6139.34640238.11250-0.773004.119403.15500K562GPKOW
XPAENSG00000136936.6165.45470237.03320-0.518702.480001.61030K562MATR3
XPAENSG00000136936.6624.16190434.194100.523503.531401.82480K562NOL12
XPAENSG00000136936.6454.53570336.806300.432402.044701.56450K562PUS1
XPAENSG00000136936.6336.08670117.534601.5156012.9092011.12340K562RPS19
XPAENSG00000136936.6140.19630202.42960-0.530002.358601.57150K562SF3B4
XPAENSG00000136936.6162.68250228.93970-0.492902.042301.42820K562TARDBP
XPAENSG00000136936.694.94520157.51160-0.730302.765801.82030K562TRIM56
XPAENSG00000136936.6295.27650194.875900.599403.697502.76500K562U2AF2
XPAENSG00000136936.6383.87370258.453900.570604.749003.66640K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for XPA is not available on ENCORE database.





7 RBPs can affect the splicing of XPA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEXPAENSG00000136936.6chr9-1004380441004382411004373481004378691004444811004447120.269000.002540.06388includedK562AKAP8L
SEXPAENSG00000136936.6chr9-100444481100444712100437190100437869100447204100447322-0.076000.000050.00100excludedHepG2U2AF2
SEXPAENSG00000136936.6chr9-100449377100449543100447204100447322100455930100456041-0.134000.004200.04032excludedK562AQR
SEXPAENSG00000136936.6chr9-1004444811004447121004371901004378691004472041004473220.098000.000020.00765includedK562LARP4
SEXPAENSG00000136936.6chr9-100451815100451921100449377100449543100455930100456041-0.105000.000140.03218excludedK562LARP4
SEXPAENSG00000136936.6chr9-1004444811004447121004371901004378691004472041004473220.182000.000380.04624includedHepG2LARP4
SEXPAENSG00000136936.6chr9-100449377100449543100447204100447322100455930100456041-0.148000.000080.00485excludedK562UTP18
SEXPAENSG00000136936.6chr9-100444481100444712100437190100437869100447204100447322-0.223000.002060.06779excludedHepG2HNRNPC
A3SSXPAENSG00000136936.6chr9-1004518151004519611004518151004519211004559301004560410.087000.000380.00291longerK562AQR
MXEXPAENSG00000136936.6chr9-100449377100449543100451815100451921100447204100447322100455930100456041-0.167000.000500.004542includedHepG2U2AF2
MXEXPAENSG00000136936.6chr9-100449377100449543100451882100451921100447242100447322100455930100456041-0.076000.004160.075742includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for XPA is not avaliable on ENCORE database.