GPALPP1

General Information

Gene Name       : GPALPP1
Gene ID             : ENSG00000133114.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GPALPP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPALPP1ENSG00000133114.1718.0921.6819.88ENCSR000AEF
HepG2GPALPP1ENSG00000133114.1713.7616.6115.18ENCSR985KAT
K562GPALPP1ENSG00000133114.1712.3012.4112.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPALPP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPALPP1 RNA is bound by 5 proteins.  







eCLIP assay for GPALPP1 is not avaliable on ENCORE database.





5 proteins are bound to GPALPP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr134560477945604838+3'-UTR,intron-Distal,intron-Proximal3.853344.36393K562AKAP1
chr134560441745604513+3'-UTR,intron-Distal4.276093.81568K562FAM120A
chr134558035045580439+5'-UTR,CDS,intron-Proximal5.042327.04013HepG2BCLAF1
chr134558292645583003+5'-UTR,CDS,intron-Proximal4.938446.58593HepG2BCLAF1
chr134558910245589172+5'-UTR,CDS3.963303.32022K562UCHL5
chr134557851945578568+CDS4.111843.45943HepG2BCLAF1
chr134560191645602067+CDS,intron-Proximal3.109625.00905HepG2BCLAF1
chr134558958145589704+CDS5.228307.73487HepG2BCLAF1
chr134560158845601646+intron-Distal4.040373.35169HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPALPP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPALPP1 is not available on ENCORE database.

  • 55 RBPs can affect the levels of GPALPP1.  








The Knockdown/knockout RNA-Seq assay for GPALPP1 is not available on ENCORE database.





55 RBPs can affect the gene expression of GPALPP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPALPP1ENSG00000133114.13625.68290807.51270-0.368101.833201.39020HepG2AKAP1
GPALPP1ENSG00000133114.13325.77890471.99010-0.534904.648203.67440HepG2AKAP8L
GPALPP1ENSG00000133114.13323.54010473.79360-0.550303.586602.91440HepG2BOP1
GPALPP1ENSG00000133114.13396.92320569.11420-0.519904.331303.39080HepG2CALR
GPALPP1ENSG00000133114.13489.21870634.79450-0.375802.043801.37250HepG2CIRBP
GPALPP1ENSG00000133114.13335.87330469.67770-0.483804.261203.46980HepG2CKAP4
GPALPP1ENSG00000133114.13231.23100387.40000-0.744505.734104.41930HepG2DDX24
GPALPP1ENSG00000133114.13458.50660664.44820-0.535203.301402.63350HepG2DDX6
GPALPP1ENSG00000133114.13292.12400385.58480-0.400502.390801.73120HepG2DNAJC21
GPALPP1ENSG00000133114.13304.71170419.46750-0.461102.416101.38280HepG2EFTUD2
GPALPP1ENSG00000133114.13522.54820705.98180-0.434102.415601.81690HepG2EIF4A3
GPALPP1ENSG00000133114.13356.51820687.32130-0.947007.271506.18530HepG2EIF4B
GPALPP1ENSG00000133114.13530.99410712.22510-0.423602.563301.89680HepG2FXR1
GPALPP1ENSG00000133114.13459.83530660.73580-0.523003.385402.65280HepG2G3BP1
GPALPP1ENSG00000133114.13540.80460701.40020-0.375102.128201.35330HepG2G3BP2
GPALPP1ENSG00000133114.13249.95090363.67730-0.541002.867701.95360HepG2GEMIN5
GPALPP1ENSG00000133114.13261.49360433.78770-0.730204.059602.71300HepG2GRSF1
GPALPP1ENSG00000133114.13305.14980412.71760-0.435602.400401.51310HepG2HNRNPM
GPALPP1ENSG00000133114.13439.45670671.63870-0.612004.603303.75230HepG2IGF2BP2
GPALPP1ENSG00000133114.13347.19890439.36470-0.339702.365701.68020HepG2ILF2
GPALPP1ENSG00000133114.13518.44830964.48590-0.895603.278102.37150HepG2LARP4
GPALPP1ENSG00000133114.13313.70930716.47420-1.1915013.0255011.73080HepG2MATR3
GPALPP1ENSG00000133114.13478.49320733.36190-0.616004.532203.73130HepG2NCBP2
GPALPP1ENSG00000133114.13446.87490629.04780-0.493305.063004.36940HepG2PTBP1
GPALPP1ENSG00000133114.13454.59850626.12590-0.461903.105302.47990HepG2PUF60
GPALPP1ENSG00000133114.13517.55740664.19030-0.359902.173801.57630HepG2PUM2
GPALPP1ENSG00000133114.13389.74890715.87750-0.8772012.5398011.59810HepG2RBM22
GPALPP1ENSG00000133114.13528.65650700.08590-0.405203.312602.73170HepG2NELFE
GPALPP1ENSG00000133114.13354.45280504.88660-0.510402.233001.50970HepG2RPS2
GPALPP1ENSG00000133114.13232.84040398.90290-0.776705.450704.14260HepG2SERBP1
GPALPP1ENSG00000133114.13435.10240665.30580-0.612703.764002.97280HepG2SF3A3
GPALPP1ENSG00000133114.13741.20350518.250000.516102.506601.76410HepG2SNRNP70
GPALPP1ENSG00000133114.13488.91080683.61680-0.483604.823304.24290HepG2SRSF1
GPALPP1ENSG00000133114.13344.59890702.02280-1.0266018.5915017.51360HepG2SSB
GPALPP1ENSG00000133114.13409.71730703.08680-0.779104.367603.62020HepG2SUCLG1
GPALPP1ENSG00000133114.13771.50440614.421900.328302.385901.85860HepG2TAF15
GPALPP1ENSG00000133114.13368.02920511.69440-0.475502.737702.11220HepG2U2AF1
GPALPP1ENSG00000133114.13258.68940609.48050-1.236403.303602.22250HepG2U2AF2
GPALPP1ENSG00000133114.13399.72820569.64580-0.511004.827304.07240HepG2UTP3
GPALPP1ENSG00000133114.13491.51530648.91420-0.400804.054803.42680HepG2ZNF622
GPALPP1ENSG00000133114.13419.28670641.69120-0.613906.849406.01400K562AGGF1
GPALPP1ENSG00000133114.13391.62080667.69690-0.769706.524505.48890K562AKAP8L
GPALPP1ENSG00000133114.13384.75350492.20090-0.355302.036201.35520K562CPSF6
GPALPP1ENSG00000133114.13251.06230357.15780-0.508503.166602.04550K562DDX3X
GPALPP1ENSG00000133114.13257.23840397.71270-0.628603.662801.70720K562DDX51
GPALPP1ENSG00000133114.13213.32100368.24530-0.787605.410704.10870K562EFTUD2
GPALPP1ENSG00000133114.13397.71610583.78770-0.553703.238202.47010K562EIF2S2
GPALPP1ENSG00000133114.13270.28520373.12570-0.465202.692601.88280K562EIF4A3
GPALPP1ENSG00000133114.13618.90330401.174300.625403.948903.06790K562G3BP2
GPALPP1ENSG00000133114.13509.43860778.06690-0.611002.725101.97350K562GRSF1
GPALPP1ENSG00000133114.13553.75830756.64160-0.450403.690302.44640K562HNRNPL
GPALPP1ENSG00000133114.13339.61160458.31920-0.432502.135501.32430K562HNRNPM
GPALPP1ENSG00000133114.13369.99580526.39950-0.508603.860002.75560K562MATR3
GPALPP1ENSG00000133114.13408.83410579.50850-0.503304.810803.76740K562MTPAP
GPALPP1ENSG00000133114.13242.26000481.84660-0.992004.818103.40660K562PABPN1
GPALPP1ENSG00000133114.13334.35570469.31290-0.489203.124702.08500K562PCBP2
GPALPP1ENSG00000133114.13342.92060512.49090-0.579704.958004.09330K562PTBP1
GPALPP1ENSG00000133114.13795.667101037.69550-0.383102.937702.09660K562PUF60
GPALPP1ENSG00000133114.13449.07120662.25730-0.560404.562703.88880K562PUS1
GPALPP1ENSG00000133114.13424.60520645.19940-0.603606.164105.30500K562RBM15
GPALPP1ENSG00000133114.13356.27860491.36570-0.463803.012902.13140K562RBM22
GPALPP1ENSG00000133114.13272.09660417.31750-0.617004.808203.66850K562SF3B4
GPALPP1ENSG00000133114.13225.50510350.66320-0.636903.730502.49030K562SRFBP1
GPALPP1ENSG00000133114.13373.10720508.46150-0.446502.703102.00310K562TARDBP
GPALPP1ENSG00000133114.13380.34350490.47460-0.366902.136701.42540K562TIA1
GPALPP1ENSG00000133114.13269.94450401.74860-0.573604.118603.14020K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPALPP1 is not available on ENCORE database.





4 RBPs can affect the splicing of GPALPP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGPALPP1ENSG00000133114.13chr13+456033734560624245601919456021384560737045607737-0.401000.005330.07965excludedK562SRSF1
SEGPALPP1ENSG00000133114.13chr13+4558310645583135455829294558301445589086455892180.063000.000010.00582includedK562LARP4
A3SSGPALPP1ENSG00000133114.13chr13+4558906645589218455890864558921845582929455830140.074000.000180.00150longerK562AQR
A5SSGPALPP1ENSG00000133114.13chr13+4558289345583135455828934558301445589086455892180.058000.000560.01144longerK562AQR
A5SSGPALPP1ENSG00000133114.13chr13+4558292945583135455829294558301445589086455892180.070000.000040.04633longerHepG2SUB1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GPALPP1 is not avaliable on ENCORE database.