UBE2M

General Information

Gene Name : UBE2M
Gene ID : ENSG00000130725.7
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBE2M)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBE2M	ENSG00000130725.7	80.15	71.31	75.73	ENCSR000AEF
HepG2	UBE2M	ENSG00000130725.7	61.76	50.64	56.20	ENCSR985KAT
K562	UBE2M	ENSG00000130725.7	98.62	109.32	103.97	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBE2M is not avaliable on ENCORE database.

Proteins bound to RNA

UBE2M RNA is bound by 31 proteins.

eCLIP assay for UBE2M is not avaliable on ENCORE database.

31 proteins are bound to UBE2M RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	59067152	59067232	-	3'-UTR,intron-Distal	3.85023	10.22807	HepG2	LARP4
chr19	59067283	59067293	-	3'-UTR,intron-Distal	3.41828	24.35405	K562	DDX55
chr19	59067548	59067597	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.39599	60.85518	K562	PABPC4
chr19	59068226	59068311	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.11322	5.98359	K562	EFTUD2
chr19	59067127	59067226	-	3'-UTR,intron-Distal	4.27202	4.44583	HepG2	UPF1
chr19	59068431	59068492	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.11966	3.25521	K562	LIN28B
chr19	59067237	59067294	-	3'-UTR,intron-Distal	3.09828	7.93104	HepG2	SUB1
chr19	59068249	59068266	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.15659	8.62853	K562	PRPF8
chr19	59067261	59067292	-	3'-UTR,intron-Distal	3.60766	22.83920	K562	PABPC4
chr19	59067251	59067261	-	3'-UTR,intron-Distal	3.48847	17.31602	K562	PABPC4
chr19	59067100	59067153	-	3'-UTR,intron-Distal	4.67708	3.70058	HepG2	XPO5
chr19	59067237	59067293	-	3'-UTR,intron-Distal	3.02621	5.25593	K562	METAP2
chr19	59067234	59067283	-	3'-UTR,intron-Distal	3.32398	35.72860	K562	DDX55
chr19	59067238	59067251	-	3'-UTR,intron-Distal	3.71932	19.95813	K562	PABPC4
chr19	59068280	59068291	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18488	3.18246	K562	PRPF8
chr19	59067418	59067474	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.61958	6.89080	HepG2	LARP4
chr19	59068208	59068268	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.43090	21.15632	HepG2	PRPF8
chr19	59067238	59067294	-	3'-UTR,intron-Distal	3.05908	9.29886	HepG2	LARP4
chr19	59067233	59067293	-	3'-UTR,intron-Distal	3.50683	7.19520	HepG2	AKAP1
chr19	59067185	59067230	-	3'-UTR,intron-Distal	4.93094	20.54725	K562	PABPC4
chr19	59067156	59067217	-	3'-UTR,intron-Distal	4.44389	7.99200	K562	DDX6
chr19	59068132	59068158	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.53075	5.29191	K562	BUD13
chr19	59067160	59067185	-	3'-UTR,intron-Distal	5.35126	24.04927	K562	PABPC4
chr19	59067142	59067160	-	3'-UTR,intron-Distal	6.50490	8.38820	K562	PABPC4
chr19	59069836	59069905	-	5'-UTR,intron-Distal	3.51849	8.46624	K562	GEMIN5
chr19	59069808	59069981	-	5'-UTR,intron-Distal,intron-Proximal	3.15017	7.70534	K562	DDX3X
chr19	59069756	59069841	-	5'-UTR,intron-Distal,intron-Proximal	3.21368	5.06116	HepG2	RPS3
chr19	59069663	59069736	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.74423	7.79455	K562	UCHL5
chr19	59069668	59069730	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.91820	8.25234	K562	ZNF622
chr19	59069904	59069944	-	5'-UTR,intron-Distal	3.81151	4.41402	K562	DROSHA
chr19	59069858	59069869	-	5'-UTR,intron-Distal	4.19301	3.36385	K562	UCHL5
chr19	59069756	59069815	-	5'-UTR,intron-Distal,intron-Proximal	4.26501	21.11668	K562	GEMIN5
chr19	59069647	59069725	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.17462	7.15714	K562	ZNF800
chr19	59069737	59069819	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.03149	17.74352	HepG2	DDX3X
chr19	59069662	59069743	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.14975	5.48645	K562	GRWD1
chr19	59069840	59070003	-	5'-UTR,intron-Distal	3.59227	20.96561	HepG2	DDX3X
chr19	59069666	59069747	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.18972	7.83758	K562	PUM1
chr19	59069706	59069770	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.75407	4.76554	HepG2	BCLAF1
chr19	59067598	59067655	-	CDS,intron-Distal,intron-Proximal	5.53059	6.82887	HepG2	EFTUD2
chr19	59067587	59067637	-	CDS,intron-Distal,intron-Proximal	3.98633	6.80384	HepG2	BUD13
chr19	59067638	59067667	-	CDS,intron-Distal,intron-Proximal	4.64464	8.54286	K562	PRPF8
chr19	59068006	59068059	-	CDS,intron-Distal,intron-Proximal	3.43131	7.26494	HepG2	PRPF8
chr19	59067647	59067697	-	CDS,intron-Distal,intron-Proximal	3.34878	4.46036	HepG2	PRPF8
chr19	59067682	59067711	-	CDS,intron-Distal,intron-Proximal	5.69722	62.12515	K562	PABPC4
chr19	59068059	59068098	-	CDS,intron-Distal	3.58188	9.07921	K562	YBX3
chr19	59068755	59068863	-	intron-Distal	5.19833	9.23520	HepG2	PRPF4
chr19	59068535	59068598	-	intron-Distal,intron-Proximal	5.61227	10.04245	K562	AQR
chr19	59067995	59068034	-	intron-Distal,intron-Proximal	4.47845	3.90539	HepG2	RBM22
chr19	59068537	59068587	-	intron-Distal,intron-Proximal	3.49218	4.98422	K562	PRPF8
chr19	59068371	59068425	-	intron-Distal,intron-Proximal	5.68113	9.75034	HepG2	PRPF8
chr19	59069390	59069496	-	intron-Distal	4.89393	7.66822	HepG2	PRPF4
chr19	59068761	59068888	-	intron-Distal	5.35234	4.95161	K562	GTF2F1
chr19	59068774	59068810	-	intron-Distal	4.88443	5.33214	K562	PRPF8
chr19	59068219	59068249	-	intron-Distal,intron-Proximal	4.13991	10.90795	K562	PRPF8
chr19	59067792	59067974	-	intron-Distal,intron-Proximal	4.94644	6.57498	HepG2	PCBP2
chr19	59069374	59069449	-	intron-Distal	3.90645	4.76791	K562	GTF2F1
chr19	59068157	59068202	-	intron-Distal,intron-Proximal	4.81191	5.40008	K562	SF3B4
chr19	59069374	59069461	-	intron-Distal	4.48151	3.99130	HepG2	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for UBE2M is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBE2M is not available on ENCORE database.
75 RBPs can affect the levels of UBE2M.

The Knockdown/knockout RNA-Seq assay for UBE2M is not available on ENCORE database.

75 RBPs can affect the gene expression of UBE2M :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBE2M	ENSG00000130725.3	695.10870	546.91920	0.34580	2.43890	1.71390	HepG2	AKAP8L
UBE2M	ENSG00000130725.3	933.96830	497.89300	0.90740	11.99090	10.86290	HepG2	BOP1
UBE2M	ENSG00000130725.3	375.29910	492.64720	-0.39250	2.49990	1.76380	HepG2	CALR
UBE2M	ENSG00000130725.3	731.12540	544.76090	0.42440	2.75500	1.65310	HepG2	CPSF7
UBE2M	ENSG00000130725.3	532.19590	385.64620	0.46460	3.18120	2.08890	HepG2	YBX3
UBE2M	ENSG00000130725.3	263.96550	401.49720	-0.60500	3.00790	1.57410	HepG2	CSTF2T
UBE2M	ENSG00000130725.3	592.42280	779.09690	-0.39520	2.34460	1.76360	HepG2	DDX3X
UBE2M	ENSG00000130725.3	991.75120	669.51800	0.56680	2.89920	2.26850	HepG2	DDX6
UBE2M	ENSG00000130725.3	267.16760	365.21240	-0.45100	2.41790	1.50140	HepG2	DHX30
UBE2M	ENSG00000130725.3	517.56650	378.64360	0.45080	3.54410	2.75460	HepG2	DNAJC21
UBE2M	ENSG00000130725.3	1089.29220	894.71570	0.28380	2.55510	1.97340	HepG2	ETF1
UBE2M	ENSG00000130725.3	402.21050	543.07380	-0.43320	2.69100	1.91530	HepG2	FUBP3
UBE2M	ENSG00000130725.3	1008.69520	771.11900	0.38740	2.04320	1.33860	HepG2	LARP4
UBE2M	ENSG00000130725.3	960.85650	721.82530	0.41260	2.41690	1.82480	HepG2	MATR3
UBE2M	ENSG00000130725.3	330.90910	504.33130	-0.60790	2.68550	1.73380	HepG2	MTPAP
UBE2M	ENSG00000130725.3	267.54410	438.44050	-0.71260	4.83500	3.85640	HepG2	NSUN2
UBE2M	ENSG00000130725.3	503.94060	657.70330	-0.38420	2.15420	1.51140	HepG2	PABPC4
UBE2M	ENSG00000130725.3	529.24290	714.11770	-0.43220	3.72460	3.11030	HepG2	PTBP1
UBE2M	ENSG00000130725.3	519.37240	681.45120	-0.39180	2.60470	2.02390	HepG2	PUF60
UBE2M	ENSG00000130725.3	840.94770	723.40350	0.21710	1.81520	1.31240	HepG2	PUM1
UBE2M	ENSG00000130725.3	620.73850	773.35480	-0.31710	2.20870	1.63960	HepG2	QKI
UBE2M	ENSG00000130725.3	643.87400	446.11680	0.52930	2.21010	1.57460	HepG2	RAVER1
UBE2M	ENSG00000130725.3	543.84040	701.88890	-0.36810	2.47470	1.83320	HepG2	RBM25
UBE2M	ENSG00000130725.3	570.69780	410.98190	0.47360	2.63320	1.66580	HepG2	RBM27
UBE2M	ENSG00000130725.3	635.81060	794.72400	-0.32190	2.57250	2.04790	HepG2	NELFE
UBE2M	ENSG00000130725.3	528.62230	740.21450	-0.48570	4.95320	4.15890	HepG2	RECQL
UBE2M	ENSG00000130725.3	502.19910	370.23760	0.43970	2.76840	2.15320	HepG2	RPS19
UBE2M	ENSG00000130725.3	510.35280	379.02830	0.42910	2.27300	1.54260	HepG2	RPS2
UBE2M	ENSG00000130725.3	531.25850	376.16520	0.49790	4.72770	3.92390	HepG2	SAFB2
UBE2M	ENSG00000130725.3	886.42790	664.89610	0.41480	2.40000	1.77310	HepG2	SF3A3
UBE2M	ENSG00000130725.3	616.18900	743.44470	-0.27090	1.88930	1.38500	HepG2	SF3B4
UBE2M	ENSG00000130725.3	531.94320	438.65690	0.27810	1.93110	1.37770	HepG2	SMN1
UBE2M	ENSG00000130725.3	689.82730	455.63500	0.59830	3.77240	2.64110	HepG2	SMNDC1
UBE2M	ENSG00000130725.3	581.69560	844.62390	-0.53800	6.85360	6.16300	HepG2	SRFBP1
UBE2M	ENSG00000130725.3	504.46270	776.01330	-0.62130	7.61190	6.91910	HepG2	SRSF1
UBE2M	ENSG00000130725.3	372.24010	672.84940	-0.85410	12.42180	11.22530	HepG2	SRSF5
UBE2M	ENSG00000130725.3	509.86080	733.32540	-0.52440	6.19710	5.48610	HepG2	SSB
UBE2M	ENSG00000130725.3	324.20180	429.84040	-0.40690	2.05790	1.46150	HepG2	SUPV3L1
UBE2M	ENSG00000130725.3	403.12490	697.56090	-0.79110	10.31870	9.34550	HepG2	TAF15
UBE2M	ENSG00000130725.3	3234.78730	2027.93670	0.67360	20.89520	19.44960	K562	AGGF1
UBE2M	ENSG00000130725.3	1434.94700	1173.68880	0.28980	3.09110	1.48690	K562	AKAP1
UBE2M	ENSG00000130725.3	3060.22140	2228.40590	0.45750	4.90420	3.50640	K562	AKAP8
UBE2M	ENSG00000130725.3	3442.12120	2110.16260	0.70580	6.37230	5.35060	K562	AKAP8L
UBE2M	ENSG00000130725.3	2553.18100	3402.11930	-0.41410	6.21790	4.76500	K562	CELF1
UBE2M	ENSG00000130725.3	2944.36500	2048.94920	0.52300	12.31380	11.04570	K562	DDX47
UBE2M	ENSG00000130725.3	1457.36600	1205.76950	0.27330	2.65660	1.38660	K562	DDX6
UBE2M	ENSG00000130725.3	2625.38060	2270.67060	0.20930	2.17520	1.40940	K562	DKC1
UBE2M	ENSG00000130725.3	1410.79260	1800.03720	-0.35150	4.63700	3.73570	K562	EIF2S2
UBE2M	ENSG00000130725.3	1617.98050	1105.03750	0.55000	3.27020	2.13820	K562	EIF3D
UBE2M	ENSG00000130725.3	1035.73230	741.71930	0.48160	5.60760	4.49010	K562	EIF3G
UBE2M	ENSG00000130725.3	1387.96220	1118.95450	0.31070	3.17590	1.91950	K562	EIF4B
UBE2M	ENSG00000130725.3	1405.65130	1084.58780	0.37400	3.87970	2.31580	K562	EWSR1
UBE2M	ENSG00000130725.3	1842.42330	1310.65620	0.49120	5.44890	4.23450	K562	FIP1L1
UBE2M	ENSG00000130725.3	479.34010	776.51230	-0.69600	3.34640	2.55470	K562	G3BP2
UBE2M	ENSG00000130725.3	2117.52310	1313.68230	0.68870	3.10900	1.79400	K562	HNRNPA2B1
UBE2M	ENSG00000130725.3	1663.28550	1078.16260	0.62540	6.33580	4.84110	K562	HNRNPM
UBE2M	ENSG00000130725.3	1519.12100	1030.12610	0.56030	4.13200	2.76910	K562	IGF2BP2
UBE2M	ENSG00000130725.3	1423.00350	1047.64390	0.44170	3.72180	2.29610	K562	IGF2BP3
UBE2M	ENSG00000130725.3	2790.75450	2239.40130	0.31740	3.25260	2.35120	K562	KIF1C
UBE2M	ENSG00000130725.3	2789.21350	2143.66500	0.37970	4.05430	2.67550	K562	MAK16
UBE2M	ENSG00000130725.3	1416.75500	1080.04500	0.39140	3.82410	2.72380	K562	MATR3
UBE2M	ENSG00000130725.3	2097.23290	1148.74280	0.86830	4.68650	3.30320	K562	PABPN1
UBE2M	ENSG00000130725.3	1320.64620	1058.09250	0.31970	2.78890	1.43520	K562	PCBP1
UBE2M	ENSG00000130725.3	2471.66090	1488.04040	0.73200	7.15590	5.71970	K562	PPIG
UBE2M	ENSG00000130725.3	2235.76470	1365.37640	0.71140	2.91670	1.41100	K562	PPP1R8
UBE2M	ENSG00000130725.3	1495.46930	1051.53820	0.50800	6.37510	5.40260	K562	PTBP1
UBE2M	ENSG00000130725.3	2735.08530	3145.97480	-0.20190	2.18180	1.32810	K562	PUM2
UBE2M	ENSG00000130725.3	3415.91430	2092.68480	0.70680	5.11020	4.40100	K562	PUS1
UBE2M	ENSG00000130725.3	3033.89790	2039.02050	0.57320	10.03540	8.93220	K562	RBM15
UBE2M	ENSG00000130725.3	1736.17150	1023.07390	0.76290	8.30170	6.87470	K562	RPS19
UBE2M	ENSG00000130725.3	1371.65000	1064.94780	0.36500	2.50620	1.55970	K562	RPS3
UBE2M	ENSG00000130725.3	1833.72570	1050.34880	0.80380	3.30980	1.96110	K562	SF1
UBE2M	ENSG00000130725.3	1725.97240	2006.25740	-0.21710	2.09990	1.38310	K562	SF3A3
UBE2M	ENSG00000130725.3	2094.16170	1280.19190	0.70990	2.94830	1.58310	K562	SFPQ
UBE2M	ENSG00000130725.3	1906.93620	1206.58150	0.66020	2.53590	1.38090	K562	SNRNP200
UBE2M	ENSG00000130725.3	1569.87070	1030.89520	0.60660	8.60900	7.36560	K562	SRSF1
UBE2M	ENSG00000130725.3	1528.68960	1043.25310	0.55110	5.72360	4.68430	K562	TARDBP
UBE2M	ENSG00000130725.3	1355.79860	1006.35640	0.42990	4.48680	3.40720	K562	TIA1
UBE2M	ENSG00000130725.3	2811.06240	2360.87830	0.25170	3.36530	1.95530	K562	TROVE2
UBE2M	ENSG00000130725.3	549.91010	776.75650	-0.49830	2.34540	1.60670	K562	U2AF2
UBE2M	ENSG00000130725.3	1757.73210	2155.65020	-0.29440	4.11980	3.25980	K562	UPF1
UBE2M	ENSG00000130725.3	1436.69410	1844.50450	-0.36050	3.61110	2.61220	K562	WDR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBE2M is not available on ENCORE database.

5 RBPs can affect the splicing of UBE2M :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	UBE2M	ENSG00000130725.3	chr19	-	59068053	59068194			59068053	59068157	59068258	59068297	0.07300	0.00000	0.00000	longer	HepG2	SF3A3
A3SS	UBE2M	ENSG00000130725.3	chr19	-	59067682	59067857			59067682	59067746	59068053	59068194	0.05500	0.00000	0.00000	longer	K562	U2AF2
A3SS	UBE2M	ENSG00000130725.3	chr19	-	59067682	59067857			59067682	59067746	59068053	59068194	0.14900	0.00000	0.00000	longer	HepG2	U2AF2
A3SS	UBE2M	ENSG00000130725.3	chr19	-	59068429	59068598			59068429	59068524	59069639	59070327	0.09800	0.00000	0.00000	longer	K562	AQR
A3SS	UBE2M	ENSG00000130725.3	chr19	-	59067682	59067857			59067682	59067746	59068053	59068157	0.15500	0.00000	0.00000	longer	HepG2	U2AF1
MXE	UBE2M	ENSG00000130725.3	chr19	-	59067682	59067746	59068053	59068157	59067078	59067596	59068258	59068297	0.09700	0.00089	0.02551	1included	K562	FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBE2M

General Information

Functions

Localization

Domains (AlphaFold: UBE2M)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBE2M is not avaliable on ENCORE database.

31 proteins are bound to UBE2M RNA:

eCLIP assay for UBE2M is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBE2M is not available on ENCORE database.

75 RBPs can affect the gene expression of UBE2M :

The Knockdown/knockout RNA-Seq assay for UBE2M is not available on ENCORE database.

5 RBPs can affect the splicing of UBE2M :

The Knockdown/knockout RNA-Seq assay for UBE2M is not avaliable on ENCORE database.