C17orf61-PLSCR3

General Information

Gene Name       : C17orf61-PLSCR3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C17orf61-PLSCR3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C17orf61-PLSCR3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C17orf61-PLSCR3 RNA is bound by 16 proteins.  







eCLIP assay for C17orf61-PLSCR3 is not avaliable on ENCORE database.





16 proteins are bound to C17orf61-PLSCR3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1772977807297798-3'-UTR,5'-UTR,intron-Distal5.235956.74224HepG2AQR
chr1772974497297586-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.891676.02664K562DDX3X
chr1772977547297790-3'-UTR,5'-UTR,intron-Distal6.3067913.72936K562AQR
chr1772976977297812-3'-UTR,5'-UTR,intron-Distal3.435977.89388HepG2PRPF8
chr1772939527294007-3'-UTR,CDS,intron-Distal,intron-Proximal3.849943.16051HepG2PPIG
chr1772977907297795-3'-UTR,5'-UTR,intron-Distal6.1679512.64691K562AQR
chr1772977527297780-3'-UTR,5'-UTR,intron-Distal5.398978.88638HepG2AQR
chr1773073397307413-5'-UTR,CDS,intron-Distal,intron-Proximal5.4540319.01650HepG2LARP4
chr1773073337307406-5'-UTR,CDS,intron-Distal,intron-Proximal5.558718.90399HepG2DDX3X
chr1773073167307410-5'-UTR,CDS,intron-Distal,intron-Proximal5.3941218.94710K562DDX3X
chr1773073657307415-5'-UTR,CDS,intron-Distal,intron-Proximal3.406995.66201HepG2NCBP2
chr1773066287306660-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.8002511.91640HepG2LARP4
chr1773069907306998-5'-UTR,CDS,intron-Distal3.9154011.91640HepG2LARP4
chr1773070027307082-5'-UTR,CDS,intron-Distal,intron-Proximal4.353013.93614HepG2AQR
chr1773073147307404-5'-UTR,CDS,intron-Distal,intron-Proximal3.104626.68418HepG2DDX55
chr1773069757307008-5'-UTR,CDS,intron-Distal,intron-Proximal3.995378.96385K562DDX3X
chr1773072977307373-5'-UTR,CDS,intron-Distal,intron-Proximal3.110913.99124HepG2PPIG
chr1773073177307339-5'-UTR,CDS,intron-Distal4.7627819.87491HepG2LARP4
chr1773069757307009-5'-UTR,CDS,intron-Distal,intron-Proximal3.676975.21096K562DDX55
chr1773066727306719-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.145826.98523HepG2U2AF2
chr1773073347307400-5'-UTR,CDS,intron-Distal,intron-Proximal5.855666.59792K562PABPC4
chr1773069767306986-5'-UTR,CDS,intron-Distal,intron-Proximal3.483175.81815HepG2LARP4
chr1773066807306707-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3310616.55545HepG2LARP4
chr1773066607306680-3'-UTR,5'-UTR,CDS,intron-Distal4.2364215.97887HepG2LARP4
chr1773066387306711-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.059736.09386K562DDX55
chr1773069707307021-5'-UTR,CDS,intron-Distal,intron-Proximal5.598117.53537HepG2U2AF2
chr1773073187307384-5'-UTR,CDS,intron-Distal,intron-Proximal3.486566.51063K562DDX55
chr1773069367306983-5'-UTR,CDS,intron-Distal,intron-Proximal5.048067.36776HepG2PRPF8
chr1773066457306698-3'-UTR,5'-UTR,CDS,intron-Distal3.672168.21916K562YBX3
chr1773070017307008-5'-UTR,CDS,intron-Distal4.2921411.35341HepG2LARP4
chr1773064017306525-3'-UTR,CDS,intron-Distal4.137034.27920HepG2YBX3
chr1773067287306803-intron-Distal,intron-Proximal3.220267.22233HepG2PRPF4
chr1773067437306809-intron-Distal,intron-Proximal3.928725.09328HepG2SF3B4
chr1773064807306522-3'-UTR,CDS,intron-Distal3.413399.27085K562YBX3
chr1773063767306417-3'-UTR,CDS,intron-Distal3.934018.14591K562YBX3
chr1773067117306792-intron-Distal,intron-Proximal5.5655713.14409HepG2SF3A3
chr1773068477306935-intron-Distal,intron-Proximal3.9591915.07765HepG2PRPF4
chr1773063707306443-3'-UTR,CDS,intron-Distal3.3743118.31403HepG2LARP4
chr1773068527306910-intron-Distal,intron-Proximal4.132765.09328HepG2SF3B4
chr1773063307306370-3'-UTR,intron-Distal4.1220110.48878HepG2LARP4
chr1773064307306441-3'-UTR,CDS,intron-Distal5.0944419.85955K562YBX3
chr1773064177306430-3'-UTR,CDS,intron-Distal4.882608.30668K562YBX3
chr1773063747306448-3'-UTR,CDS,intron-Distal3.420114.75351K562LIN28B
chr1773064417306480-3'-UTR,CDS,intron-Distal4.7127630.46373K562YBX3
chr1772968317296886-intron-Distal,intron-Proximal5.037815.02942K562EFTUD2
chr1773068507306896-intron-Distal,intron-Proximal3.755415.26540HepG2GTF2F1
chr1773070247307096-intron-Distal,intron-Proximal4.364788.09250HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C17orf61-PLSCR3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C17orf61-PLSCR3 is not available on ENCORE database.

  • 2 RBPs can affect the levels of C17orf61-PLSCR3.  








The Knockdown/knockout RNA-Seq assay for C17orf61-PLSCR3 is not available on ENCORE database.





2 RBPs can affect the gene expression of C17orf61-PLSCR3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C17orf61-PLSCR3ENSG00000262481.19.091800.507804.162101.929401.39140HepG2EIF4A3
C17orf61-PLSCR3ENSG00000262481.17.392700.0000099999.999902.159701.70700HepG2TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C17orf61-PLSCR3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of C17orf61-PLSCR3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for C17orf61-PLSCR3 is not avaliable on ENCORE database.