SDHAP1

General Information

Gene Name       : SDHAP1
Gene ID             : ENSG00000185485.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SDHAP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SDHAP1ENSG00000185485.145.9710.268.12ENCSR000AEF
HepG2SDHAP1ENSG00000185485.1424.7414.9019.82ENCSR985KAT
K562SDHAP1ENSG00000185485.1422.8217.8820.35ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SDHAP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SDHAP1 RNA is bound by 16 proteins.  







eCLIP assay for SDHAP1 is not avaliable on ENCORE database.





16 proteins are bound to SDHAP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3195686914195686968-intron-Distal3.0197810.98928HepG2U2AF2
chr3195710940195710976-intron-Distal,intron-Proximal6.1587629.88239K562AQR
chr3195686914195686967-intron-Distal3.108084.95209HepG2U2AF1
chr3195701344195701409-intron-Distal,intron-Proximal3.585874.43601HepG2EIF3H
chr3195711025195711091-intron-Distal5.042327.04013HepG2BCLAF1
chr3195695159195695237-intron-Distal4.019964.01646HepG2SRSF1
chr3195710918195710983-intron-Distal,intron-Proximal4.257138.31500HepG2PRPF8
chr3195701362195701431-intron-Distal,intron-Proximal3.237994.39623HepG2PPIG
chr3195710976195710982-intron-Distal,intron-Proximal5.9252325.00748K562AQR
chr3195701342195701421-intron-Distal,intron-Proximal3.159533.00343HepG2GRWD1
chr3195711007195711110-intron-Distal3.385306.96039K562BUD13
chr3195717060195717136-intron-Distal,intron-Proximal3.775619.94493HepG2PPIG
chr3195692301195692340-intron-Distal4.205183.20743HepG2PPIG
chr3195716633195716728-intron-Distal4.501396.67793HepG2EFTUD2
chr3195701358195701409-intron-Distal,intron-Proximal3.503714.51027K562BUD13
chr3195711001195711086-intron-Distal3.869845.73400HepG2PPIG
chr3195702503195702576-intron-Distal,intron-Proximal3.800456.79537K562AQR
chr3195710928195710938-intron-Distal,intron-Proximal4.416114.09264K562AQR
chr3195717060195717158-intron-Distal,intron-Proximal3.320427.14071HepG2NCBP2
chr3195710943195710983-intron-Distal,intron-Proximal4.618725.32906HepG2AQR
chr3195692398195692411-intron-Distal4.541143.77023K562ZNF622
chr3195692374195692423-intron-Distal,intron-Proximal3.399726.38100K562BUD13
chr3195711014195711093-intron-Distal3.898053.53067K562SRSF1
chr3195709755195709832-intron-Distal4.455225.31505K562HNRNPM
chr3195694384195694434-intron-Distal,intron-Proximal3.739864.74268K562UCHL5
chr3195692387195692411-intron-Distal4.381363.89826HepG2BCLAF1
chr3195711001195711100-intron-Distal3.446629.05903K562UCHL5
chr3195694385195694461-intron-Distal,intron-Proximal3.940408.54758K562ZNF622
chr3195711006195711101-intron-Distal3.227889.35554K562DDX24
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SDHAP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SDHAP1 is not available on ENCORE database.

  • 45 RBPs can affect the levels of SDHAP1.  








The Knockdown/knockout RNA-Seq assay for SDHAP1 is not available on ENCORE database.





45 RBPs can affect the gene expression of SDHAP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SDHAP1ENSG00000185485.10221.00530356.59840-0.690206.040905.21210HepG2ACO1
SDHAP1ENSG00000185485.10244.93370166.165600.559702.567401.60650HepG2ADAR
SDHAP1ENSG00000185485.10163.50210280.35810-0.778003.699603.09650HepG2AKAP1
SDHAP1ENSG00000185485.10138.12380199.90440-0.533302.121901.44010HepG2CALR
SDHAP1ENSG00000185485.10253.19970356.47230-0.493503.541702.80450HepG2CKAP4
SDHAP1ENSG00000185485.10155.15430258.26260-0.735102.928801.51810HepG2CSTF2T
SDHAP1ENSG00000185485.10218.46930165.855900.397401.854901.30190HepG2DNAJC2
SDHAP1ENSG00000185485.10124.72480226.33920-0.859704.405903.00300HepG2EFTUD2
SDHAP1ENSG00000185485.10439.13530221.762700.985508.059907.08520HepG2EIF2S1
SDHAP1ENSG00000185485.10145.47030220.42530-0.599602.369301.52700HepG2EIF3D
SDHAP1ENSG00000185485.10235.00970348.41720-0.568103.549002.60210HepG2EWSR1
SDHAP1ENSG00000185485.10286.25720190.474700.587603.099002.27000HepG2FUBP3
SDHAP1ENSG00000185485.10353.48010247.307200.515202.480501.82480HepG2FXR1
SDHAP1ENSG00000185485.10451.48640232.341800.958308.122806.97490HepG2HNRNPK
SDHAP1ENSG00000185485.10349.97930234.531900.577402.537901.58550HepG2KHSRP
SDHAP1ENSG00000185485.10352.97140247.393800.512602.480101.85850HepG2MAGOH
SDHAP1ENSG00000185485.10126.74700230.66660-0.863903.104301.98790HepG2METAP2
SDHAP1ENSG00000185485.10295.28000185.275300.672303.408802.57850HepG2NSUN2
SDHAP1ENSG00000185485.10238.33400166.475900.517602.652201.92930HepG2PPIL4
SDHAP1ENSG00000185485.10288.80590363.21150-0.330701.838401.31440HepG2PUS1
SDHAP1ENSG00000185485.10218.86690421.15640-0.944306.030105.33850HepG2RBM22
SDHAP1ENSG00000185485.10307.75420227.659200.434802.101101.50800HepG2RBM25
SDHAP1ENSG00000185485.10352.38530257.770700.451002.556302.03350HepG2NELFE
SDHAP1ENSG00000185485.10356.66610240.091200.570903.911903.19590HepG2RECQL
SDHAP1ENSG00000185485.10124.28900214.52350-0.787402.739002.12650HepG2RPS19
SDHAP1ENSG00000185485.10109.82450171.68710-0.644602.334801.60620HepG2RRP9
SDHAP1ENSG00000185485.10143.48860215.24450-0.585002.570301.66270HepG2SERBP1
SDHAP1ENSG00000185485.10421.24070333.025700.338902.345301.69110HepG2SLBP
SDHAP1ENSG00000185485.10332.61000475.65500-0.516102.622602.12970HepG2SRFBP1
SDHAP1ENSG00000185485.10290.28980181.337700.678704.324603.72810HepG2TIAL1
SDHAP1ENSG00000185485.10241.93690182.988700.402801.902501.41750HepG2TRIM56
SDHAP1ENSG00000185485.10209.63520305.68170-0.544102.294301.71750HepG2U2AF1
SDHAP1ENSG00000185485.10199.13080132.348600.589302.170601.49790HepG2UCHL5
SDHAP1ENSG00000185485.10327.68510409.83420-0.322701.962901.35820HepG2UPF1
SDHAP1ENSG00000185485.10309.48660395.68020-0.354502.141101.60050HepG2UTP3
SDHAP1ENSG00000185485.10333.54940450.74050-0.434403.534202.93690HepG2ZNF622
SDHAP1ENSG00000185485.101168.53010870.515300.424703.632302.97790K562AQR
SDHAP1ENSG00000185485.10638.10600503.792300.340902.900801.65780K562EIF2S1
SDHAP1ENSG00000185485.10959.02240479.143601.0010015.5773013.52290K562EIF4A3
SDHAP1ENSG00000185485.10137.18330281.89190-1.039006.341105.17330K562G3BP2
SDHAP1ENSG00000185485.10506.28630397.390700.349301.879401.37560K562HNRNPC
SDHAP1ENSG00000185485.10690.56840928.34420-0.426902.502401.64590K562MBNL1
SDHAP1ENSG00000185485.101024.798101252.92360-0.290002.293401.32970K562PUM1
SDHAP1ENSG00000185485.101012.749301227.53090-0.277502.514201.59770K562PUM2
SDHAP1ENSG00000185485.10270.32650433.29390-0.680604.376403.34460K562RPS19
SDHAP1ENSG00000185485.10706.37700583.286700.276102.026201.32080K562SF3A3
SDHAP1ENSG00000185485.10402.91360293.065800.459103.005902.11370K562SF3B4
SDHAP1ENSG00000185485.10789.36870626.694400.332803.041802.28930K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SDHAP1 is not available on ENCORE database.





19 RBPs can affect the splicing of SDHAP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESDHAP1ENSG00000185485.10chr3-195695089195695256195694749195694861195698193195698315-0.201000.000820.01780excludedK562SRSF1
SESDHAP1ENSG00000185485.10chr3-1957133891957134751957124971957126601957170601957171870.462000.000520.07528includedK562MATR3
SESDHAP1ENSG00000185485.10chr3-195690170195690292195686791195686957195692299195692413-0.519000.000420.00992excludedHepG2U2AF1
SESDHAP1ENSG00000185485.10chr3-1956871701956872941956866181956869571956901701956902920.477000.000020.00141includedK562AKAP8L
SESDHAP1ENSG00000185485.10chr3-195695089195695256195694749195694861195698193195698315-0.472000.000230.02493excludedHepG2TBRG4
SESDHAP1ENSG00000185485.10chr3-195690170195690292195686791195686957195692299195692413-0.488000.000260.00451excludedHepG2U2AF2
SESDHAP1ENSG00000185485.10chr3-1957107801957109071957090321957091811957109821957111470.079000.001060.01283includedK562AQR
SESDHAP1ENSG00000185485.10chr3-195690170195690292195686791195686957195692299195692413-0.131000.007820.06681excludedK562AQR
SESDHAP1ENSG00000185485.10chr3-1956950891956952561956947491956948611956981931956983150.142000.000230.04234includedK562DROSHA
SESDHAP1ENSG00000185485.10chr3-1956871701956872941956866181956869571956901701956902920.359000.001650.02576includedK562PUS1
SESDHAP1ENSG00000185485.10chr3-195711399195711608195710982195711147195712497195712660-0.077000.000240.00506excludedK562PUS1
SESDHAP1ENSG00000185485.10chr3-195695089195695256195694749195694861195698193195698315-0.437000.000020.00296excludedHepG2NCBP2
SESDHAP1ENSG00000185485.10chr3-1956950891956952561956947491956948611956981931956983150.154000.000050.01719includedK562LARP4
SESDHAP1ENSG00000185485.10chr3-195695089195695256195694749195694861195698193195698315-0.149000.000440.07696excludedK562APOBEC3C
SESDHAP1ENSG00000185485.10chr3-1956871701956872941956866181956869571956901701956902920.868000.000120.01607includedHepG2DDX6
SESDHAP1ENSG00000185485.10chr3-195713389195713475195712497195712660195717060195717187-0.641000.000380.08780excludedHepG2CDC40
SESDHAP1ENSG00000185485.10chr3-195695089195695256195694749195694861195698193195698315-0.307000.000030.00150excludedHepG2SRSF1
SESDHAP1ENSG00000185485.10chr3-195711464195711608195710982195711147195712497195712660-0.288000.003300.06427excludedHepG2SRSF1
SESDHAP1ENSG00000185485.10chr3-1956950891956952561956947491956948611956981931956983360.214000.000000.00011includedK562HNRNPUL1
SESDHAP1ENSG00000185485.10chr3-1956871701956872941956866181956869571956901701956902920.352000.000090.06625includedK562HLTF
SESDHAP1ENSG00000185485.10chr3-195687170195687294195686618195686957195690170195690292-0.211000.000720.09695excludedK562EIF4G2
SESDHAP1ENSG00000185485.10chr3-195690170195690292195686791195686957195692299195692413-0.319000.000040.00958excludedK562SRSF7
SESDHAP1ENSG00000185485.10chr3-1956871701956872941956866181956869571956901701956902920.361000.001360.03537includedK562AGGF1
SESDHAP1ENSG00000185485.10chr3-1956950891956952561956947491956948611956981931956983150.227000.000370.01260includedK562AGGF1
A3SSSDHAP1ENSG00000185485.10chr3-1956922991956924481956922991956924131956943841956945150.177000.000290.00228longerK562AQR
A3SSSDHAP1ENSG00000185485.10chr3-1956901621956903541956901621956902921956922991956924480.088000.019440.09307longerK562AQR
A3SSSDHAP1ENSG00000185485.10chr3-1957066141957067621957066141957067371957090321957091810.217000.000020.00023longerK562AQR
A3SSSDHAP1ENSG00000185485.10chr3-1957109821957111741957109821957111471957124971957126600.104000.007690.04212longerK562AQR
A3SSSDHAP1ENSG00000185485.10chr3-1957039531957041821957039531957041221957066141957067620.364000.000090.00077longerK562AQR
A3SSSDHAP1ENSG00000185485.10chr3-1957090321957092231957090321957091811957109821957111470.235000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SDHAP1 is not avaliable on ENCORE database.