AHNAK

General Information

Gene Name : AHNAK
Gene ID : ENSG00000124942.13
Essential Gene : No

Functions

Splicing regulation

Localization

Not Available

Domains (AlphaFold: AHNAK)

No checked domain (RRM, ZNF, KH, Helicase, Nuclease, dRBM or PUM_HD)

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AHNAK	ENSG00000124942.13	33.73	28.80	31.27	ENCSR000AEF
HepG2	AHNAK	ENSG00000124942.13	26.77	35.80	31.28	ENCSR985KAT
K562	AHNAK	ENSG00000124942.13	25.48	30.30	27.89	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	AHNAK-BG293LV05-WT293		AHNAK	293T	Released			shRNA	KD% = ,
knockdown followed by RNA-seq	AHNAK-BG293LV06-WT293		AHNAK	293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
AHNAK	293T	shRNA	AHNAK-BG293LV05-49,AHNAK-BG293LV05-50	NT-BG293LV05-1,NT-BG293LV05-2	,	Released	ENCORE2
AHNAK	293T	shRNA	BG293LV05-51,BG293LV05-52	BG293LV05-1,BG293LV05-2		NotSatisfied	ENCORE2
AHNAK	293T	shRNA	AHNAK-BG293LV06-77B,AHNAK-BG293LV06-78B	NT-BG293LV06-1B,NT-BG293LV06-2B	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AHNAK is not avaliable on ENCORE database.

Proteins bound to RNA

AHNAK RNA is bound by 60 proteins.

CanvasJS.com

eCLIP assay for AHNAK is not avaliable on ENCORE database.

60 proteins are bound to AHNAK RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	62284182	62284207	-	3'-UTR,intron-Distal	6.94866	400.00000	K562	PUM2
chr11	62284130	62284171	-	3'-UTR,intron-Distal	6.06125	400.00000	K562	PUM2
chr11	62284207	62284266	-	3'-UTR,CDS,intron-Distal	5.92240	400.00000	K562	PUM2
chr11	62284171	62284182	-	3'-UTR,intron-Distal	6.94933	400.00000	K562	PUM2
chr11	62297409	62297601	-	CDS,intron-Distal	4.25040	65.88459	HepG2	BCLAF1
chr11	62294582	62294679	-	CDS,intron-Distal	4.78208	42.25793	K562	UCHL5
chr11	62299412	62299516	-	CDS,intron-Distal	6.13446	42.03586	HepG2	G3BP1
chr11	62299411	62299535	-	CDS,intron-Distal	3.56669	38.06049	HepG2	BCLAF1
chr11	62291406	62291511	-	CDS,intron-Distal	3.83350	37.88048	K562	UCHL5
chr11	62293242	62293326	-	CDS,intron-Distal	6.14301	37.48043	HepG2	FXR2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 1,035 entries

eCLIP assay for AHNAK is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for AHNAK is not available on ENCORE database.
183 RBPs can affect the levels of AHNAK.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AHNAK is not available on ENCORE database.

183 RBPs can affect the gene expression of AHNAK :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AHNAK	ENSG00000124942.9	29567.37910	11350.57460	1.38110	266.84990	262.44190	K562	NSUN2
AHNAK	ENSG00000124942.9	2932.97720	17400.15840	-2.56870	178.39960	174.50140	HepG2	EWSR1
AHNAK	ENSG00000124942.9	7748.82940	17802.66150	-1.20000	128.23730	125.41510	HepG2	CKAP4
AHNAK	ENSG00000124942.9	28838.64620	12035.29790	1.26060	114.38820	111.21090	K562	UPF1
AHNAK	ENSG00000124942.9	3761.53090	11425.50260	-1.60290	97.93570	94.76920	K562	FXR1
AHNAK	ENSG00000124942.9	7491.46750	14079.05410	-0.91020	85.70900	83.18620	HepG2	SMN1
AHNAK	ENSG00000124942.9	5768.08620	13418.91160	-1.21810	86.20600	83.11920	HepG2	PARN
AHNAK	ENSG00000124942.9	3447.38040	17542.36150	-2.34730	81.96580	79.74700	HepG2	AKAP1
AHNAK	ENSG00000124942.9	2965.04770	7695.29710	-1.37590	61.85500	58.94440	K562	SYNCRIP
AHNAK	ENSG00000124942.9	4208.92530	13789.75110	-1.71210	59.57640	56.82030	HepG2	CIRBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 244 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AHNAK

General Information

Functions

Localization

Domains (AlphaFold: AHNAK)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AHNAK is not avaliable on ENCORE database.

60 proteins are bound to AHNAK RNA:

eCLIP assay for AHNAK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AHNAK is not available on ENCORE database.

183 RBPs can affect the gene expression of AHNAK :

The Knockdown/knockout RNA-Seq assay for AHNAK is not available on ENCORE database.

No RBPs affect the alternative splcing events of AHNAK on ENCORE database.

The Knockdown/knockout RNA-Seq assay for AHNAK is not avaliable on ENCORE database.