ITGAV

General Information

Gene Name : ITGAV
Gene ID : ENSG00000138448.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ITGAV)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ITGAV	ENSG00000138448.11	4.76	4.52	4.64	ENCSR000AEF
HepG2	ITGAV	ENSG00000138448.11	39.36	47.13	43.25	ENCSR985KAT
K562	ITGAV	ENSG00000138448.11	6.15	6.90	6.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ITGAV is not avaliable on ENCORE database.

Proteins bound to RNA

ITGAV RNA is bound by 25 proteins.

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eCLIP assay for ITGAV is not avaliable on ENCORE database.

25 proteins are bound to ITGAV RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	187490198	187490213	+	CDS,intron-Proximal	8.33101	91.88038	HepG2	LIN28B
chr2	187490213	187490232	+	CDS	8.05729	72.40844	HepG2	LIN28B
chr2	187487146	187487158	+	CDS,intron-Proximal	7.80300	68.11336	HepG2	LIN28B
chr2	187495544	187495586	+	CDS,intron-Distal,intron-Proximal	6.67942	60.52169	HepG2	LIN28B
chr2	187511316	187511453	+	CDS,intron-Proximal	4.45384	46.55747	HepG2	U2AF2
chr2	187454956	187455020	+	5'-UTR	5.52526	44.56013	HepG2	DDX3X
chr2	187455066	187455154	+	CDS	4.07669	40.87468	HepG2	DDX3X
chr2	187455020	187455065	+	5'-UTR	4.93675	34.87423	HepG2	DDX3X
chr2	187487090	187487140	+	CDS	6.72762	30.83313	HepG2	LIN28B
chr2	187454822	187454897	+	5'-UTR	3.85218	27.49727	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 93 entries

eCLIP assay for ITGAV is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ITGAV is not available on ENCORE database.
169 RBPs can affect the levels of ITGAV.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ITGAV is not available on ENCORE database.

169 RBPs can affect the gene expression of ITGAV :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ITGAV	ENSG00000138448.7	11220.53250	3172.95290	1.82210	207.71790	205.35660	HepG2	SRSF1
ITGAV	ENSG00000138448.7	15050.84430	5849.84740	1.36330	121.93460	119.87830	HepG2	SRFBP1
ITGAV	ENSG00000138448.7	6730.60490	2581.39580	1.38250	108.61210	106.23800	HepG2	SRSF9
ITGAV	ENSG00000138448.7	7416.69380	2565.52120	1.53140	87.33880	85.41550	HepG2	ZNF622
ITGAV	ENSG00000138448.7	7295.96690	3039.82440	1.26300	85.85470	83.47230	HepG2	SF3B4
ITGAV	ENSG00000138448.7	6835.61190	2869.44950	1.25220	82.51880	80.05280	HepG2	PCBP1
ITGAV	ENSG00000138448.7	17625.85010	3990.70430	2.14290	69.67550	67.60450	HepG2	AKAP1
ITGAV	ENSG00000138448.7	1867.85110	4033.47560	-1.11060	65.82940	63.39750	HepG2	SAFB2
ITGAV	ENSG00000138448.7	13323.65020	5157.89260	1.36900	60.26990	58.07440	HepG2	CELF1
ITGAV	ENSG00000138448.7	7590.43300	2919.81910	1.37820	55.77390	54.01250	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 198 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ITGAV is not available on ENCORE database.

20 RBPs can affect the splicing of ITGAV :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ITGAV	ENSG00000138448.7	chr2	+	187498055	187498101			187490199	187490314	187500808	187500934	-0.41500	0.00000	0.00000	excluded	HepG2	PRPF8
SE	ITGAV	ENSG00000138448.7	chr2	+	187531876	187531957			187531430	187531510	187532397	187532747	-0.29000	0.00000	0.00000	excluded	HepG2	U2AF2
SE	ITGAV	ENSG00000138448.7	chr2	+	187498055	187498101			187490199	187490314	187500808	187500934	0.25300	0.00000	0.00087	included	HepG2	XRCC6
MXE	ITGAV	ENSG00000138448.7	chr2	+	187490199	187490314	187498055	187498101	187487065	187487157	187500808	187500934	0.22000	0.00000	0.00091	1included	HepG2	PRPF8
SE	ITGAV	ENSG00000138448.7	chr2	+	187498055	187498101			187490199	187490314	187500808	187500934	0.23600	0.00002	0.00166	included	HepG2	HNRNPU
SE	ITGAV	ENSG00000138448.7	chr2	+	187531876	187531957			187531430	187531510	187532397	187532503	-0.13100	0.00007	0.00207	excluded	HepG2	U2AF1
SE	ITGAV	ENSG00000138448.7	chr2	+	187541539	187541662			187540546	187540654	187541923	187542168	-0.19600	0.00008	0.00257	excluded	K562	SF3B4
SE	ITGAV	ENSG00000138448.7	chr2	+	187498055	187498101			187490199	187490314	187500808	187500934	0.24400	0.00008	0.00702	included	HepG2	SFPQ
SE	ITGAV	ENSG00000138448.7	chr2	+	187498055	187498101			187490199	187490314	187500808	187500934	0.24000	0.00014	0.00389	included	HepG2	U2AF1
MXE	ITGAV	ENSG00000138448.7	chr2	+	187500808	187500934	187501791	187501836	187490199	187490314	187503003	187503047	-0.08300	0.00016	0.00470	2included	HepG2	U2AF1

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ITGAV

General Information

Functions

Localization

Domains (AlphaFold: ITGAV)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ITGAV is not avaliable on ENCORE database.

25 proteins are bound to ITGAV RNA:

eCLIP assay for ITGAV is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ITGAV is not available on ENCORE database.

169 RBPs can affect the gene expression of ITGAV :

The Knockdown/knockout RNA-Seq assay for ITGAV is not available on ENCORE database.

20 RBPs can affect the splicing of ITGAV :

The Knockdown/knockout RNA-Seq assay for ITGAV is not avaliable on ENCORE database.