CMTM3

General Information

Gene Name       : CMTM3
Gene ID             : ENSG00000140931.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CMTM3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CMTM3ENSG00000140931.1910.1317.1813.66ENCSR000AEF
HepG2CMTM3ENSG00000140931.1939.5435.0037.27ENCSR985KAT
K562CMTM3ENSG00000140931.1921.5519.5420.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CMTM3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CMTM3 RNA is bound by 12 proteins.  







eCLIP assay for CMTM3 is not avaliable on ENCORE database.





12 proteins are bound to CMTM3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166664664566646734+3'-UTR,intron-Distal4.803576.75461HepG2AKAP1
chr166664690666646993+3'-UTR,CDS,intron-Proximal5.6805912.73103HepG2UPF1
chr166664692666646995+3'-UTR,CDS,intron-Proximal3.174885.38734HepG2AKAP1
chr166664726966647310+3'-UTR4.018783.70195HepG2UPF1
chr166664652166646591+3'-UTR,CDS,intron-Distal3.994993.06143HepG2IGF2BP1
chr166664728266647359+3'-UTR4.706345.24231K562UPF1
chr166664714166647225+3'-UTR4.030925.99105K562UPF1
chr166664675566646819+3'-UTR,intron-Distal3.297894.17280HepG2AKAP1
chr166664705866647126+3'-UTR3.621374.14074K562UPF1
chr166664747366647606+3'-UTR4.510939.20161K562UPF1
chr166664663466646729+3'-UTR,intron-Distal3.615697.60345HepG2UPF1
chr166664382066643878+3'-UTR,CDS,intron-Distal4.531006.69007K562YBX3
chr166664653766646624+3'-UTR,intron-Distal5.065998.87118HepG2UPF1
chr166664726566647332+3'-UTR3.123225.00913HepG2LIN28B
chr166664688066646926+3'-UTR,intron-Proximal4.128323.45716HepG2AKAP1
chr166664743766647500+3'-UTR4.232563.66896HepG2FUBP3
chr166664726666647324+3'-UTR4.232914.72426K562LIN28B
chr166664686866646906+3'-UTR,intron-Proximal4.401544.20997HepG2UPF1
chr166664686966646994+3'-UTR,CDS,intron-Proximal5.5951410.00893K562UPF1
chr166664677966646834+3'-UTR,intron-Distal4.392944.07810K562UPF1
chr166663870766638805+5'-UTR,CDS,intron-Distal3.088166.49759HepG2DDX3X
chr166663928666639354+5'-UTR,intron-Distal,intron-Proximal3.439023.48042HepG2NKRF
chr166663809266638187+5'-UTR,intron-Distal,intron-Proximal4.546185.44815HepG2PRPF4
chr166663859366638707+5'-UTR,intron-Distal,intron-Proximal4.166478.36290HepG2DDX3X
chr166664335266643434+CDS,intron-Distal,intron-Proximal3.420913.69775K562YBX3
chr166663872166638769+CDS,intron-Distal4.204764.19989HepG2UPF1
chr166663949466639576+intron-Distal,intron-Proximal3.954243.52528HepG2FAM120A
chr166663951066639581+intron-Distal,intron-Proximal3.266903.46580HepG2CSTF2T
chr166663950666639570+intron-Distal,intron-Proximal5.038004.63331HepG2XRN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CMTM3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CMTM3 is not available on ENCORE database.

  • 159 RBPs can affect the levels of CMTM3.  








The Knockdown/knockout RNA-Seq assay for CMTM3 is not available on ENCORE database.





159 RBPs can affect the gene expression of CMTM3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CMTM3ENSG00000140931.151060.00640633.410700.742809.336207.51490HepG2AATF
CMTM3ENSG00000140931.152923.47800924.968001.6601059.7566057.84570HepG2ACO1
CMTM3ENSG00000140931.153274.19240788.570002.0537052.4667050.59750HepG2AKAP1
CMTM3ENSG00000140931.151474.38640943.046300.644605.879404.39320HepG2AKAP8
CMTM3ENSG00000140931.151389.88120652.432801.0910016.5321014.79050HepG2ASCC1
CMTM3ENSG00000140931.152354.886601058.307401.1538046.8979044.68260HepG2AUH
CMTM3ENSG00000140931.151372.82940683.622401.0058012.005909.98700HepG2BCCIP
CMTM3ENSG00000140931.15966.06190680.470200.505503.717502.29930HepG2BUD13
CMTM3ENSG00000140931.15945.19090520.147700.861607.719706.52220HepG2CALR
CMTM3ENSG00000140931.151485.96910953.683000.639705.123003.77710HepG2CCAR1
CMTM3ENSG00000140931.15973.06840619.869900.650506.057104.94410HepG2CIRBP
CMTM3ENSG00000140931.151205.69060924.652200.382805.528804.64840HepG2CKAP4
CMTM3ENSG00000140931.15770.163801397.20910-0.859306.668205.48260HepG2CNOT7
CMTM3ENSG00000140931.151022.41000407.123801.3283022.6980020.96610HepG2CPSF6
CMTM3ENSG00000140931.151222.35290747.911500.708608.758006.90590HepG2CPSF7
CMTM3ENSG00000140931.15565.57000422.278300.421402.611901.56340HepG2CSTF2
CMTM3ENSG00000140931.151023.93950648.826000.658104.914702.92980HepG2CSTF2T
CMTM3ENSG00000140931.152658.875101023.430001.3773061.6909059.47800HepG2CELF1
CMTM3ENSG00000140931.151339.281701100.463700.283203.487302.67220HepG2DAZAP1
CMTM3ENSG00000140931.151176.84370855.410100.460107.646006.37540HepG2DDX19B
CMTM3ENSG00000140931.151327.40810755.298800.813409.292608.20440HepG2DDX3X
CMTM3ENSG00000140931.15850.04850503.108000.756609.271107.08040HepG2DDX52
CMTM3ENSG00000140931.151260.70520672.139300.907309.883508.52810HepG2DDX55
CMTM3ENSG00000140931.151155.97710462.323901.322002.421601.50730HepG2DDX59
CMTM3ENSG00000140931.152015.43460649.032901.6346032.3277030.55540HepG2DDX6
CMTM3ENSG00000140931.15898.80720626.880000.519704.803703.52930HepG2DHX30
CMTM3ENSG00000140931.15678.54600884.91410-0.383103.879403.10360HepG2DKC1
CMTM3ENSG00000140931.151000.22430649.964700.621809.054907.83490HepG2DNAJC21
CMTM3ENSG00000140931.15886.32930644.180400.460306.367805.43750HepG2DNAJC2
CMTM3ENSG00000140931.151051.85210643.383800.709105.885004.28040HepG2AGO1
CMTM3ENSG00000140931.15846.55670623.717100.440602.856302.25430HepG2EIF2S1
CMTM3ENSG00000140931.151045.63650487.165901.1018014.7711012.87470HepG2EIF3D
CMTM3ENSG00000140931.15952.85810689.177300.467302.974402.31100HepG2EIF4A3
CMTM3ENSG00000140931.151718.62390671.208301.3563018.0747016.42140HepG2EIF4B
CMTM3ENSG00000140931.15726.406601085.65330-0.579709.054807.70660HepG2EIF4G1
CMTM3ENSG00000140931.152948.133701215.004201.2787060.5856058.46300HepG2ETF1
CMTM3ENSG00000140931.151762.72800903.757100.9637019.7933017.71900HepG2EWSR1
CMTM3ENSG00000140931.15577.81590435.503200.407802.877201.68390HepG2FAM120A
CMTM3ENSG00000140931.15949.38730665.624500.512205.012003.54090HepG2FASTKD2
CMTM3ENSG00000140931.152527.78800917.368101.462209.868108.53270HepG2FIP1L1
CMTM3ENSG00000140931.151537.127201029.529000.578204.952602.74660HepG2FMR1
CMTM3ENSG00000140931.15571.10590418.081400.449902.942402.13330HepG2FUBP3
CMTM3ENSG00000140931.151280.77950788.706500.699405.318403.80350HepG2FUS
CMTM3ENSG00000140931.151239.26740695.664100.832909.977008.73870HepG2FXR1
CMTM3ENSG00000140931.151007.36600645.165700.642705.535804.60810HepG2G3BP1
CMTM3ENSG00000140931.15931.13420685.141400.442503.121402.17580HepG2G3BP2
CMTM3ENSG00000140931.15769.87850433.743600.827708.813907.25850HepG2GEMIN5
CMTM3ENSG00000140931.151302.74400727.633900.840206.086904.55430HepG2GNB2L1
CMTM3ENSG00000140931.151076.27830461.466201.2217010.377309.19090HepG2GPKOW
CMTM3ENSG00000140931.151137.37660743.472800.613303.806301.97090HepG2GTF2F1
CMTM3ENSG00000140931.151238.86910883.010000.488407.584606.06770HepG2HDGF
CMTM3ENSG00000140931.151225.47160756.432000.696004.153402.42270HepG2HLTF
CMTM3ENSG00000140931.151560.901301154.039700.435602.811301.39940HepG2HNRNPAB
CMTM3ENSG00000140931.151011.23660729.876300.470304.001303.17860HepG2HNRNPC
CMTM3ENSG00000140931.151038.33530653.673300.667506.849705.78980HepG2HNRNPK
CMTM3ENSG00000140931.151557.944001002.445800.6360015.8225014.32760HepG2HNRNPL
CMTM3ENSG00000140931.15664.83240440.389400.594102.877302.23680HepG2HNRNPLL
CMTM3ENSG00000140931.15820.23600632.764900.374302.504201.59640HepG2HNRNPM
CMTM3ENSG00000140931.151546.685801026.721100.591004.560502.98610HepG2HSPD1
CMTM3ENSG00000140931.151355.85250655.738301.0479015.5317014.08640HepG2IGF2BP2
CMTM3ENSG00000140931.151808.62390615.618101.554707.988406.38810HepG2IGF2BP3
CMTM3ENSG00000140931.151019.20020740.619100.460507.291406.16140HepG2ILF2
CMTM3ENSG00000140931.151226.89810659.670200.895108.535106.69270HepG2KHSRP
CMTM3ENSG00000140931.151029.18050643.991800.676306.674104.21630HepG2CCAR2
CMTM3ENSG00000140931.151098.42380845.465400.377505.214703.82450HepG2KIF1C
CMTM3ENSG00000140931.151688.362901007.284600.745107.065905.72650HepG2LARP4
CMTM3ENSG00000140931.151160.72050713.071200.702807.918606.08610HepG2LARP7
CMTM3ENSG00000140931.151004.98690748.430100.425102.866401.63160HepG2LIN28B
CMTM3ENSG00000140931.151003.79270715.124900.489103.316501.44840HepG2LSM11
CMTM3ENSG00000140931.151121.03870695.908400.687806.712405.70400HepG2MAGOH
CMTM3ENSG00000140931.151375.34950699.752400.9748011.7938010.55680HepG2MATR3
CMTM3ENSG00000140931.151318.63790509.828101.3709015.1431012.86640HepG2METAP2
CMTM3ENSG00000140931.151302.23410742.172400.8111011.7752010.22290HepG2MSI2
CMTM3ENSG00000140931.15812.17780623.273100.381802.650501.46170HepG2NAA15
CMTM3ENSG00000140931.151152.22020716.194000.685906.423505.47530HepG2NCBP2
CMTM3ENSG00000140931.15888.57220644.713300.462703.273701.73660HepG2NIP7
CMTM3ENSG00000140931.152155.596301091.216200.9821026.3253024.16940HepG2NOL12
CMTM3ENSG00000140931.151182.95490617.181200.938506.142204.47340HepG2NONO
CMTM3ENSG00000140931.151047.41390724.549900.531603.769701.42930HepG2NUSAP1
CMTM3ENSG00000140931.152245.963401277.159900.814305.779304.46270HepG2PABPC1
CMTM3ENSG00000140931.15932.62190637.627300.548504.294403.40750HepG2PABPC4
CMTM3ENSG00000140931.151530.99070717.695901.0929030.7998028.57730HepG2PARN
CMTM3ENSG00000140931.15798.67740660.370800.274202.279001.71780HepG2PCBP1
CMTM3ENSG00000140931.15577.14040402.883000.518504.273402.73220HepG2PKM
CMTM3ENSG00000140931.15402.29950580.76260-0.529705.050904.03900HepG2PRPF4
CMTM3ENSG00000140931.15953.18930518.521100.878309.720908.31610HepG2PRPF8
CMTM3ENSG00000140931.151729.49560671.985101.3638052.4544050.72790HepG2PTBP1
CMTM3ENSG00000140931.151895.826501105.753800.7777017.9901016.74660HepG2PUM1
CMTM3ENSG00000140931.151858.545401104.951200.7501014.3232012.87450HepG2PUM2
CMTM3ENSG00000140931.151191.98100942.123100.339304.207203.47520HepG2PUS1
CMTM3ENSG00000140931.151068.98140727.705800.554706.971906.04560HepG2QKI
CMTM3ENSG00000140931.152183.87230720.353501.6000018.7046017.02830HepG2RAVER1
CMTM3ENSG00000140931.151881.27160907.646301.0514018.8419016.94900HepG2RBM15
CMTM3ENSG00000140931.152204.921601015.534201.1184037.4806036.00050HepG2RBM22
CMTM3ENSG00000140931.151359.14150660.466501.0410020.6151018.88610HepG2RBM25
CMTM3ENSG00000140931.151200.93020859.883900.481803.440002.32880HepG2RBM27
CMTM3ENSG00000140931.151660.58120747.827301.1508036.3188034.83580HepG2NELFE
CMTM3ENSG00000140931.151202.50950696.549500.7877016.2139014.92550HepG2RECQL
CMTM3ENSG00000140931.151571.096201198.044900.391003.411602.66470HepG2RPLP0
CMTM3ENSG00000140931.151004.50160474.084101.0832018.2485016.87390HepG2RPS19
CMTM3ENSG00000140931.151338.53900792.978400.755208.077106.75420HepG2RPS2
CMTM3ENSG00000140931.15765.188301403.34870-0.875008.457407.08210HepG2RPS3A
CMTM3ENSG00000140931.151088.79850809.526100.427502.740301.67240HepG2RPS5
CMTM3ENSG00000140931.15943.91100512.926700.879808.864707.56370HepG2RRP9
CMTM3ENSG00000140931.15487.32530783.99440-0.686004.059602.18880HepG2RTF1
CMTM3ENSG00000140931.15784.22290645.699600.280302.402201.79560HepG2SAFB2
CMTM3ENSG00000140931.151935.53660801.123701.272507.221906.09680HepG2SF3A3
CMTM3ENSG00000140931.15177.40440435.87520-1.2969013.5428012.10230HepG2SF3B1
CMTM3ENSG00000140931.151291.29650699.563800.8842020.2278018.86960HepG2SF3B4
CMTM3ENSG00000140931.15706.80940227.248501.637006.121503.81060HepG2SFPQ
CMTM3ENSG00000140931.15930.74330753.009700.305603.329302.63430HepG2SMN1
CMTM3ENSG00000140931.151286.00300735.127700.806707.234405.63690HepG2SMNDC1
CMTM3ENSG00000140931.15518.52940209.296401.308804.653102.85550HepG2SNRNP200
CMTM3ENSG00000140931.152872.955801147.035901.3245072.8877071.21700HepG2SRFBP1
CMTM3ENSG00000140931.151171.71840730.217400.6821012.6334011.78190HepG2SRSF1
CMTM3ENSG00000140931.15684.98440469.069500.546203.075102.01140HepG2SRSF3
CMTM3ENSG00000140931.152256.026201028.472001.1332015.2579013.95600HepG2SRSF5
CMTM3ENSG00000140931.151846.03920594.091601.6356082.5835080.45190HepG2SRSF9
CMTM3ENSG00000140931.15463.38000995.94650-1.1039023.1776022.01110HepG2SSB
CMTM3ENSG00000140931.151104.09010673.220100.713604.872303.26610HepG2SUB1
CMTM3ENSG00000140931.152444.318601169.664501.0632047.7002045.68400HepG2SUCLG1
CMTM3ENSG00000140931.151917.85910669.110101.5191028.7830027.02280HepG2SUPV3L1
CMTM3ENSG00000140931.15363.43010656.41520-0.8529011.2058010.19740HepG2TAF15
CMTM3ENSG00000140931.15695.18930429.350300.695206.294805.26100HepG2TARDBP
CMTM3ENSG00000140931.151184.58350448.484601.4011022.3162020.12700HepG2TFIP11
CMTM3ENSG00000140931.151164.94390603.084700.9497017.5578015.51950HepG2TIA1
CMTM3ENSG00000140931.151104.09170723.501000.609703.908702.17230HepG2TRA2A
CMTM3ENSG00000140931.15564.35970387.078600.543903.193901.50990HepG2TROVE2
CMTM3ENSG00000140931.151277.055601017.638700.327502.689101.82900HepG2TUFM
CMTM3ENSG00000140931.151447.09270784.586300.8831012.0523010.71110HepG2U2AF1
CMTM3ENSG00000140931.15965.43350243.321701.988208.617706.78680HepG2U2AF2
CMTM3ENSG00000140931.151463.705501077.145700.442303.147802.25560HepG2UBE2L3
CMTM3ENSG00000140931.15631.56280395.267900.676005.687404.59020HepG2UCHL5
CMTM3ENSG00000140931.151274.79170710.473400.8433021.0307019.45950HepG2UPF1
CMTM3ENSG00000140931.151027.77420612.715200.746105.484104.04130HepG2UPF2
CMTM3ENSG00000140931.151039.92710730.273800.509906.917005.34130HepG2UTP18
CMTM3ENSG00000140931.151592.94720685.935501.2155043.0576041.11100HepG2UTP3
CMTM3ENSG00000140931.151121.75420708.567900.662704.516102.89410HepG2XRCC5
CMTM3ENSG00000140931.151315.90720792.314500.731805.799604.29660HepG2XRCC6
CMTM3ENSG00000140931.151479.93710573.114501.3685028.1875026.46080HepG2ZC3H8
CMTM3ENSG00000140931.151406.32190781.385900.8477025.4562024.21880HepG2ZNF622
CMTM3ENSG00000140931.15445.10060301.492400.561904.515103.82210K562AGGF1
CMTM3ENSG00000140931.15471.16330329.161700.517304.100802.96910K562ATP5C1
CMTM3ENSG00000140931.15418.42290268.006500.642604.917003.07820K562BCCIP
CMTM3ENSG00000140931.1589.73860146.07170-0.702902.311601.52100K562BOP1
CMTM3ENSG00000140931.15518.79600360.302700.525904.135702.65470K562CCDC124
CMTM3ENSG00000140931.15537.04770348.789300.622606.207404.51450K562CPEB4
CMTM3ENSG00000140931.15227.16430155.318300.548402.449801.70820K562CPSF6
CMTM3ENSG00000140931.15508.92250353.733100.524703.616901.93530K562DDX19B
CMTM3ENSG00000140931.15597.64810361.053600.727008.239607.19440K562DDX47
CMTM3ENSG00000140931.15309.65510216.366900.517103.192001.76310K562DDX6
CMTM3ENSG00000140931.15793.93310428.336200.8902014.7340013.27200K562EIF2S2
CMTM3ENSG00000140931.15422.43610246.898500.774703.882502.63230K562EIF3D
CMTM3ENSG00000140931.15402.02700231.864900.793907.215306.30120K562FXR1
CMTM3ENSG00000140931.15339.84750229.919300.563702.745001.81970K562HNRNPM
CMTM3ENSG00000140931.15708.55370378.944100.9028010.053308.56550K562HSPD1
CMTM3ENSG00000140931.15312.63250191.676400.705704.444102.43200K562LSM11
CMTM3ENSG00000140931.15458.72840270.342300.762807.048605.68290K562MAGOH
CMTM3ENSG00000140931.15531.22170372.969400.510203.819902.72210K562MBNL1
CMTM3ENSG00000140931.15436.54870620.81160-0.508003.553602.27280K562MSI2
CMTM3ENSG00000140931.15353.20870227.381600.635303.312601.87170K562NONO
CMTM3ENSG00000140931.15305.10230406.92370-0.415502.865002.10720K562NSUN2
CMTM3ENSG00000140931.15216.29790417.01390-0.947107.308705.95660K562PCBP3
CMTM3ENSG00000140931.15217.08370319.86770-0.559203.297502.41810K562POLR2G
CMTM3ENSG00000140931.15434.50030317.325300.453302.644401.84610K562PPIG
CMTM3ENSG00000140931.15433.02710224.443500.948007.381506.15950K562PRPF8
CMTM3ENSG00000140931.15346.80050192.700500.847605.502504.16560K562PSIP1
CMTM3ENSG00000140931.15535.56890262.668101.0277013.2240011.82520K562PTBP1
CMTM3ENSG00000140931.15800.00880635.472500.332102.415301.65450K562PUF60
CMTM3ENSG00000140931.15847.94970662.274300.356403.150302.12820K562PUM2
CMTM3ENSG00000140931.15427.05730303.140400.494303.368802.72430K562RBM15
CMTM3ENSG00000140931.15536.51360251.768401.0914013.1705011.14470K562RBM22
CMTM3ENSG00000140931.15291.79090175.836400.730604.359603.11440K562RCC2
CMTM3ENSG00000140931.15368.10710264.969100.474202.558301.51270K562NELFE
CMTM3ENSG00000140931.15259.35420151.009700.780203.487702.35330K562RPS3
CMTM3ENSG00000140931.15409.84110180.318501.184405.382103.30560K562SFPQ
CMTM3ENSG00000140931.15344.75410166.685901.048308.486606.41210K562SRFBP1
CMTM3ENSG00000140931.15347.38330257.522600.431702.269801.62100K562SRSF1
CMTM3ENSG00000140931.15222.01510335.40120-0.595203.067401.73930K562STAU1
CMTM3ENSG00000140931.15487.01370320.830400.602104.907103.80670K562SYNCRIP
CMTM3ENSG00000140931.15381.48470260.585900.549803.272802.50200K562TARDBP
CMTM3ENSG00000140931.15341.32620251.376000.441202.131901.42170K562TIA1
CMTM3ENSG00000140931.15340.77460431.47140-0.340402.173901.53180K562UPF1
CMTM3ENSG00000140931.15575.35060426.397600.432103.190801.37370K562UPF2
CMTM3ENSG00000140931.15423.58490630.74150-0.574402.087601.34910K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CMTM3 is not available on ENCORE database.





1 RBPs can affect the splicing of CMTM3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCMTM3ENSG00000140931.15chr16+6664366166643906666437856664390666643267666434330.078000.000020.00020longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CMTM3 is not avaliable on ENCORE database.