CCNA2

General Information

Gene Name : CCNA2
Gene ID : ENSG00000145386.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCNA2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCNA2	ENSG00000145386.9	71.01	65.68	68.34	ENCSR000AEF
HepG2	CCNA2	ENSG00000145386.9	49.84	86.29	68.06	ENCSR985KAT
K562	CCNA2	ENSG00000145386.9	117.16	130.18	123.67	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCNA2 is not avaliable on ENCORE database.

Proteins bound to RNA

CCNA2 RNA is bound by 22 proteins.

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eCLIP assay for CCNA2 is not avaliable on ENCORE database.

22 proteins are bound to CCNA2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	122744826	122744866	-	5'-UTR,intron-Distal	4.63355	48.59789	K562	YBX3
chr4	122744866	122744879	-	5'-UTR,intron-Distal	4.32156	27.14704	K562	YBX3
chr4	122740648	122740717	-	CDS,intron-Distal	3.39357	24.29952	K562	PUM2
chr4	122739952	122740028	-	CDS,intron-Distal,intron-Proximal	4.59750	22.23088	K562	IGF2BP1
chr4	122744815	122744826	-	5'-UTR,intron-Distal	3.82946	20.57869	K562	YBX3
chr4	122743560	122743642	-	CDS,intron-Distal	3.25902	19.25886	K562	YBX3
chr4	122744961	122745047	-	5'-UTR,intron-Distal	3.87632	18.92122	K562	DDX3X
chr4	122738193	122738263	-	3'-UTR,intron-Distal	4.39685	18.27650	K562	LIN28B
chr4	122738777	122738840	-	3'-UTR,CDS,intron-Distal	5.33535	17.95524	K562	IGF2BP1
chr4	122744640	122744687	-	CDS,intron-Distal	3.47817	16.17308	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 60 entries

eCLIP assay for CCNA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCNA2 is not available on ENCORE database.
178 RBPs can affect the levels of CCNA2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCNA2 is not available on ENCORE database.

178 RBPs can affect the gene expression of CCNA2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCNA2	ENSG00000145386.5	169.67620	1876.35230	-3.46710	274.27470	271.33620	HepG2	ZNF622
CCNA2	ENSG00000145386.5	82.73400	2438.49210	-4.88140	243.41790	239.94870	HepG2	BOP1
CCNA2	ENSG00000145386.5	318.51030	2224.22610	-2.80390	150.46740	147.82190	HepG2	TIAL1
CCNA2	ENSG00000145386.5	71.43750	1273.04340	-4.15550	126.08500	122.75150	HepG2	EIF2S1
CCNA2	ENSG00000145386.5	265.42130	1946.74250	-2.87470	116.86810	114.13060	HepG2	RPLP0
CCNA2	ENSG00000145386.5	395.63560	1706.07560	-2.10840	112.69890	109.71150	HepG2	UPF1
CCNA2	ENSG00000145386.5	653.63590	2244.08870	-1.77960	101.27150	98.50100	HepG2	TRIM56
CCNA2	ENSG00000145386.5	208.20760	1415.06600	-2.76480	100.45800	97.78280	HepG2	RPS19
CCNA2	ENSG00000145386.5	401.10120	2000.10880	-2.31800	95.02380	92.52540	HepG2	CKAP4
CCNA2	ENSG00000145386.5	497.36580	2397.02500	-2.26890	82.12250	79.23330	HepG2	SF3B1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 225 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCNA2 is not available on ENCORE database.

3 RBPs can affect the splicing of CCNA2 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCNA2	ENSG00000145386.5	chr4	-	122742133	122742286			122741696	122741920	122743557	122743801	-0.10100	0.00000	0.00000	excluded	K562	AQR
SE	CCNA2	ENSG00000145386.5	chr4	-	122742133	122742246			122741696	122741920	122743557	122743801	-0.08100	0.00000	0.00000	excluded	K562	PUS1
A3SS	CCNA2	ENSG00000145386.5	chr4	-	122739954	122740203			122739954	122740068	122740526	122740681	0.13700	0.00000	0.00000	longer	K562	AQR
A3SS	CCNA2	ENSG00000145386.5	chr4	-	122740526	122740765			122740526	122740734	122741696	122741920	0.06100	0.00000	0.00000	longer	K562	AQR
MXE	CCNA2	ENSG00000145386.5	chr4	-	122739198	122739332	122739954	122740083	122737598	122738841	122740526	122740734	0.11700	0.00000	0.00000	1included	K562	AQR
MXE	CCNA2	ENSG00000145386.5	chr4	-	122739198	122739332	122739954	122740068	122737598	122738841	122740526	122740734	0.09400	0.00098	0.07888	1included	K562	ZNF800

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCNA2

General Information

Functions

Localization

Domains (AlphaFold: CCNA2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCNA2 is not avaliable on ENCORE database.

22 proteins are bound to CCNA2 RNA:

eCLIP assay for CCNA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCNA2 is not available on ENCORE database.

178 RBPs can affect the gene expression of CCNA2 :

The Knockdown/knockout RNA-Seq assay for CCNA2 is not available on ENCORE database.

3 RBPs can affect the splicing of CCNA2 :

The Knockdown/knockout RNA-Seq assay for CCNA2 is not avaliable on ENCORE database.