non-target      shRNA in 293T      Batch: BG293LV06

General Information

List KD experiments controlled by BG293LV06-1 and BG293LV06-2


NT-BG293LV06-1,NT-BG293LV06-2:
  • NUDT21-BG293LV06-WT293
  • CPSF6-BG293LV06-WT293
  • GRB2-BG293LV06-WT293
  • RNPS1-BG293LV06-WT293
  • RBM22-BG293LV06-WT293
  • MBNL2-BG293LV06-WT293
  • EIF4B-BG293LV06-WT293
  • MBNL1-BG293LV06-WT293
  • RBM10-BG293LV06-WT293
  • CNOT2-BG293LV06-WT293
  • GTSF1-BG293LV06-WT293
  • LGALS3-BG293LV06-WT293
  • PARN-BG293LV06-WT293
  • RBM14-BG293LV06-WT293
  • UBE2I-BG293LV06-WT293
  • ZC3HAV1-BG293LV06-WT293
  • PRRC2B-BG293LV06-WT293
  • PCBP3-BG293LV06-WT293
  • PPIA-BG293LV06-WT293
  • RBM11-BG293LV06-WT293
  • RBM4-BG293LV06-WT293
  • RBM5-BG293LV06-WT293
  • SCAF8-BG293LV06-WT293
  • SRP68-BG293LV06-WT293
  • HNRNPF-BG293LV06-WT293
  • PPP1CA-BG293LV06-WT293
  • DZIP3-BG293LV06-WT293
  • LSM1-BG293LV06-WT293

    • NT-BG293LV06-1B,NT-BG293LV06-2B:
  • YTHDF1-BG293LV06-WT293
  • LSM10-BG293LV06-WT293
  • PCBP1-BG293LV06-WT293
  • PRPF4-BG293LV06-WT293
  • HNRNPH2-BG293LV06-WT293
  • YWHAG-BG293LV06-WT293
  • AHNAK-BG293LV06-WT293
  • ZMAT3-BG293LV06-WT293
  • STAU2-BG293LV06-WT293
  • TPD52L2-BG293LV06-WT293
  • RBM42-BG293LV06-WT293
  • RPS19BP1-BG293LV06-WT293
  • WDR6-BG293LV06-WT293
  • SMNDC1-BG293LV06-WT293
  • EIF4H-BG293LV06-WT293
  • CNOT4-BG293LV06-WT293
  • CSTF2T-BG293LV06-WT293
  • FUBP1-BG293LV06-WT293
  • LGALS1-BG293LV06-WT293
  • LUC7L-BG293LV06-WT293
  • NGRN-BG293LV06-WT293
  • PRPF40A-BG293LV06-WT293
  • SNRPA-BG293LV06-WT293
  • TIAL1-BG293LV06-WT293
  • ZRANB2-BG293LV06-WT293
  • DDX17-BG293LV06-WT293
  • TOB2-BG293LV06-WT293
  • CDC40-BG293LV06-WT293
  • DDX5-BG293LV06-WT293
  • HNRNPCL1-BG293LV06-WT293
  • HNRNPH1-BG293LV06-WT293
  • TRNAU1AP-BG293LV06-WT293

    • NT-BG293LV06-1C,NT-BG293LV06-2C:No KD experiments controlled by NT-BG293LV06-1C and NT-BG293LV06-2C are available on the database

    NT-BG293LV06-1merged,NT-BG293LV06-2merged:No KD experiments controlled by NT-BG293LV06-1merged and NT-BG293LV06-2merged are available on the database

    NT-BG293LV06-1Bmerged,NT-BG293LV06-2Bmerged:No KD experiments controlled by NT-BG293LV06-1Bmerged and NT-BG293LV06-2Bmerged are available on the database




    Experiment Information (Status: Released)
    BG293LV06-1BG293LV06-2
    idx00
    TRCN#_or_BGC#
    shRNA_or_gRNA_sequence
    PAM
    Namenon-targetnon-target
    Sample_IDBG293LV06-1BG293LV06-2
    transduction_Date9/5/249/5/24
    daysD4D4
    RBP_namenon-targetnon-target
    qPCR_result
    Ave_qPCR
    RT-qPCR_primer-F
    RT-qPCR_primer-R
    protein_conc00
    WB_result
    Ave_WB
    WB_DONE_date
    MW
    IP
    antibody_Cat#
    Antibody DCC ID
    submitted_to_DCC_date
    Rep1_TPM00
    Rep2_TPM00
    ActionReadyReady
    Library_start_date
    repeat_library
    Note
    ID1213612137




    Western Blot
    Western Blot info was not avaliable




    Experiment Status
    BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-2BG293LV06-2BG293LV06-2
    Sample_IDBG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-2BG293LV06-2BG293LV06-2
    Sample Name
    Sample NameNT-BG293LV06-1NT-BG293LV06-1NT-BG293LV06-1NT-BG293LV06-2NT-BG293LV06-2NT-BG293LV06-2
    RBPnon-targetnon-targetnon-targetnon-targetnon-targetnon-target
    Cell_Line293T293T293T293T293T293T
    Exp UID
    StatusReleasedReleasedReleasedReleasedReleasedReleased
    Status_date2025-04-212025-04-212025-04-212025-04-212025-04-212025-04-21
    ProjectENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2
    Note
    ID134381356413572134391356513573




    Library-Prep Information
    BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-2BG293LV06-2BG293LV06-2BG293LV06-2BG293LV06-2
    Sample #112711127212822128
    Sample NameNT-BG293LV06-1NT-BG293LV06-1BNT-BG293LV06-1CNT-BG293LV06-1mergedNT-BG293LV06-1BmergedNT-BG293LV06-2NT-BG293LV06-2BNT-BG293LV06-2CNT-BG293LV06-2mergedNT-BG293LV06-2Bmerged
    Sample_Name_Alias
    Index Well PositionA01A01A10A01A01B01B01B10B01B01
    Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
    LibPrep_date2024-09-252024-10-022024-10-022024-09-252024-10-022024-09-252024-10-022024-10-022024-09-252024-10-02
    Lib_IDLib-240925BLib-241002Lib-241002Lib-240925BLib-241002Lib-240925BLib-241002Lib-241002Lib-240925BLib-241002
    Tecan_Location
    Tecan
    Tecan_date
    Size_bp284280291284280285274288285274
    Peak_Molarity63.4080.7038.1063.4080.7083.1091.4080.9083.1091.40
    libSampleQC_DNA_WellDNA_Library_set71/set1/A1.pngDNA_Library_set72/set1/A1.pngDNA_Library_set72/set1/A1.pngDNA_Library_set71/set1/A1.pngDNA_Library_set72/set1/A1.pngDNA_Library_set71/set1/B1.pngDNA_Library_set72/set1/B1.pngDNA_Library_set72/set1/B1.pngDNA_Library_set71/set1/B1.pngDNA_Library_set72/set1/B1.png
    RIN10.010.010.010.010.010.09.99.910.09.9
    libSample_RNA_WellRNA_Library_set71/set1/A1.pngRNA_Library_set72/set1/A1.pngRNA_Library_set72/set1/A1.pngRNA_Library_set71/set1/A1.pngRNA_Library_set72/set1/A1.pngRNA_Library_set71/set1/B1.pngRNA_Library_set72/set1/B1.pngRNA_Library_set72/set1/B1.pngRNA_Library_set71/set1/B1.pngRNA_Library_set72/set1/B1.png
    SampleQC_methodTapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022
    SampleQC_date2024-09-302024-10-042024-10-042024-09-302024-10-042024-09-302024-10-042024-10-042024-09-302024-10-04
    Sample_IDBG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-2BG293LV06-2BG293LV06-2BG293LV06-2BG293LV06-2
    RBPNTNTNTNTNTNTNTNTNTNT
    Batch_IDBG293LV06BG293LV06BG293LV06BG293LV06BG293LV06BG293LV06BG293LV06BG293LV06BG293LV06BG293LV06
    WB_result0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
    Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
    Repeat_Library_SuffixBCBBCB
    Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequence
    ProjectENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2
    ID4426455245604656465744274553456146584659




    Sequencing Information
    BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-2BG293LV06-2BG293LV06-2BG293LV06-2
    Sample_IDBG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-1BG293LV06-2BG293LV06-2BG293LV06-2BG293LV06-2
    Sample NameNT-BG293LV06-1NT-BG293LV06-1BNT-BG293LV06-1CNT-BG293LV06-1BmergedNT-BG293LV06-2NT-BG293LV06-2BNT-BG293LV06-2CNT-BG293LV06-2Bmerged
    Pool IDPool-240930Pool-241004Pool-241004Pool-241004Pool-240930Pool-241004Pool-241004Pool-241004
    LocalServer_folderset71set72set72set72set71set72set72set72
    total_reads37,928,87325,290,92216,481,86125,290,92228,493,19020,508,51629,141,63120,508,516
    total_aligned_reads33,627,63821,226,54214,890,56521,226,54224,760,68416,939,79727,010,58016,939,797
    unique_aligned_reads31,175,11019,704,99313,802,51519,704,99323,087,94815,781,09625,068,22515,781,096
    percent_uniqueAligned0.821940.779130.837440.779130.810300.769490.860220.76949
    correlation_replicates0.9934140.9942180.9948980.9942180.9934140.9942180.9948980.994218
    spikein_reads145,07097,30630,91097,306104,29466,70070,91266,700
    percent_spikeins0.003820.003850.001880.003850.003660.003250.002430.00325
    original_ReadLength101101101101101101101101
    QC_StatusSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmittedSubmitted
    ID29953121312933632996312231303364




    Data Submission Information
    DCC submission information was not avaliable




    File Information
    file_namefile_pathfile_formatoutput_typeassay_typelabSample IDplatformread_lengthrun_typepaired_endassemblygenome_annotationderived_fromcontrolled_byProjectNoteFILE_ID
    NT-BG293LV06-1_S1_L002_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab2995NovaSeq6000100paired-ended1ENCORE229337
    NT-BG293LV06-1_S1_L002_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab2995NovaSeq6000100paired-ended2ENCORE229401
    NT-BG293LV06-1_Aligned.sortedByCoord.out.bamENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab2995GRCh38V40NT-BG293LV06-1_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-1_S1_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229466
    NT-BG293LV06-1_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab2995GRCh38V40NT-BG293LV06-1_Aligned.sortedByCoord.out.bamENCORE229531
    NT-BG293LV06-1_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab2995GRCh38V40NT-BG293LV06-1_Aligned.sortedByCoord.out.bamENCORE229595
    NT-BG293LV06-1_Signal.Unique.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab2995GRCh38V40NT-BG293LV06-1_Aligned.sortedByCoord.out.bamENCORE229659
    NT-BG293LV06-1_quant.sfENCODE_DATA/set71/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab2995GRCh38V40NT-BG293LV06-1_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-1_S1_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229723
    NT-BG293LV06-1Bmerged_S9_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3363NovaSeq6000100paired-ended1NT-BG293LV06-1B_S9_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-37B_S11_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-73B_S13_L001_R1_001.filtered.trimmed.paired.fastq.gzENCORE229794
    NT-BG293LV06-1B_S9_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3121NovaSeq6000100paired-ended1ENCORE229795
    NT-BG293LV06-1Bmerged_S9_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3363NovaSeq6000100paired-ended2NT-BG293LV06-1B_S9_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-37B_S11_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-73B_S13_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE229866
    NT-BG293LV06-1B_S9_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3121NovaSeq6000100paired-ended2ENCORE229867
    NT-BG293LV06-1Bmerged_Aligned.sortedByCoord.out.bamENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3363GRCh38V40NT-BG293LV06-1Bmerged_S9_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-1Bmerged_S9_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE229938
    NT-BG293LV06-1B_Aligned.sortedByCoord.out.bamENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3121GRCh38V40NT-BG293LV06-1B_S9_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-1B_S9_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE229939
    NT-BG293LV06-1Bmerged_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3363GRCh38V40NT-BG293LV06-1Bmerged_Aligned.sortedByCoord.out.bamENCORE230010
    NT-BG293LV06-1B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3121GRCh38V40NT-BG293LV06-1B_Aligned.sortedByCoord.out.bamENCORE230011
    NT-BG293LV06-1Bmerged_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3363GRCh38V40NT-BG293LV06-1Bmerged_Aligned.sortedByCoord.out.bamENCORE230082
    NT-BG293LV06-1B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3121GRCh38V40NT-BG293LV06-1B_Aligned.sortedByCoord.out.bamENCORE230083
    NT-BG293LV06-1Bmerged_Signal.Unique.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3363GRCh38V40NT-BG293LV06-1Bmerged_Aligned.sortedByCoord.out.bamENCORE230154
    NT-BG293LV06-1B_Signal.Unique.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3121GRCh38V40NT-BG293LV06-1B_Aligned.sortedByCoord.out.bamENCORE230155
    NT-BG293LV06-1Bmerged_Signal.Unique.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3363GRCh38V40NT-BG293LV06-1Bmerged_Aligned.sortedByCoord.out.bamENCORE230226
    NT-BG293LV06-1B_Signal.Unique.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3121GRCh38V40NT-BG293LV06-1B_Aligned.sortedByCoord.out.bamENCORE230227
    NT-BG293LV06-1Bmerged_quant.sfENCODE_DATA/set72/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3363GRCh38V40NT-BG293LV06-1Bmerged_S9_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-1Bmerged_S9_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE230298
    NT-BG293LV06-1B_quant.sfENCODE_DATA/set72/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3121GRCh38V40NT-BG293LV06-1B_S9_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-1B_S9_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE230299
    NT-BG293LV06-2_S2_L002_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab2996NovaSeq6000100paired-ended1ENCORE229339
    NT-BG293LV06-2_S2_L002_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab2996NovaSeq6000100paired-ended2ENCORE229403
    NT-BG293LV06-2_Aligned.sortedByCoord.out.bamENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab2996GRCh38V40NT-BG293LV06-2_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2_S2_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229468
    NT-BG293LV06-2_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab2996GRCh38V40NT-BG293LV06-2_Aligned.sortedByCoord.out.bamENCORE229533
    NT-BG293LV06-2_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab2996GRCh38V40NT-BG293LV06-2_Aligned.sortedByCoord.out.bamENCORE229597
    NT-BG293LV06-2_Signal.Unique.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab2996GRCh38V40NT-BG293LV06-2_Aligned.sortedByCoord.out.bamENCORE229661
    NT-BG293LV06-2_quant.sfENCODE_DATA/set71/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab2996GRCh38V40NT-BG293LV06-2_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2_S2_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229725
    NT-BG293LV06-2Bmerged_S10_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3364NovaSeq6000100paired-ended1NT-BG293LV06-2B_S10_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-38B_S12_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-74B_S14_L001_R1_001.filtered.trimmed.paired.fastq.gzENCORE229796
    NT-BG293LV06-2B_S10_L001_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3122NovaSeq6000100paired-ended1ENCORE229797
    NT-BG293LV06-2Bmerged_S10_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3364NovaSeq6000100paired-ended2NT-BG293LV06-2B_S10_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-38B_S12_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-74B_S14_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE229868
    NT-BG293LV06-2B_S10_L001_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set72/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3122NovaSeq6000100paired-ended2ENCORE229869
    NT-BG293LV06-2Bmerged_Aligned.sortedByCoord.out.bamENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3364GRCh38V40NT-BG293LV06-2Bmerged_S10_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2Bmerged_S10_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE229940
    NT-BG293LV06-2B_Aligned.sortedByCoord.out.bamENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3122GRCh38V40NT-BG293LV06-2B_S10_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2B_S10_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE229941
    NT-BG293LV06-2Bmerged_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3364GRCh38V40NT-BG293LV06-2Bmerged_Aligned.sortedByCoord.out.bamENCORE230012
    NT-BG293LV06-2B_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3122GRCh38V40NT-BG293LV06-2B_Aligned.sortedByCoord.out.bamENCORE230013
    NT-BG293LV06-2Bmerged_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3364GRCh38V40NT-BG293LV06-2Bmerged_Aligned.sortedByCoord.out.bamENCORE230084
    NT-BG293LV06-2B_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3122GRCh38V40NT-BG293LV06-2B_Aligned.sortedByCoord.out.bamENCORE230085
    NT-BG293LV06-2Bmerged_Signal.Unique.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3364GRCh38V40NT-BG293LV06-2Bmerged_Aligned.sortedByCoord.out.bamENCORE230156
    NT-BG293LV06-2B_Signal.Unique.strand-.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3122GRCh38V40NT-BG293LV06-2B_Aligned.sortedByCoord.out.bamENCORE230157
    NT-BG293LV06-2Bmerged_Signal.Unique.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3364GRCh38V40NT-BG293LV06-2Bmerged_Aligned.sortedByCoord.out.bamENCORE230228
    NT-BG293LV06-2B_Signal.Unique.strand+.bwENCODE_DATA/set72/STAR_ENCORE2_trimmed_file_linksbigWig+uniqueplus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3122GRCh38V40NT-BG293LV06-2B_Aligned.sortedByCoord.out.bamENCORE230229
    NT-BG293LV06-2Bmerged_quant.sfENCODE_DATA/set72/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3364GRCh38V40NT-BG293LV06-2Bmerged_S10_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2Bmerged_S10_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE230300
    NT-BG293LV06-2B_quant.sfENCODE_DATA/set72/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3122GRCh38V40NT-BG293LV06-2B_S10_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2B_S10_L001_R2_001.filtered.trimmed.paired.fastq.gzENCORE230301