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CNOT2
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-21
BG293LV06-22
idx
0
0
TRCN#_or_BGC#
TRCN0000234898
TRCN0000234898
shRNA_or_gRNA_sequence
CCGGATGAATGGAGGAGACGTATTACTCGAGTAATACGTCTCCTCCATTCATTTTTTG
CCGGATGAATGGAGGAGACGTATTACTCGAGTAATACGTCTCCTCCATTCATTTTTTG
PAM
Name
CNOT2
CNOT2
Sample_ID
BG293LV06-21
BG293LV06-22
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
CNOT2
CNOT2
qPCR_result
88.0
84.2
Ave_qPCR
86.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10108
10109
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-21
BG293LV06-22
Sample_ID
BG293LV06-21
BG293LV06-22
Sample Name
Sample Name
CNOT2-BG293LV06-21
CNOT2-BG293LV06-22
RBP
CNOT2
CNOT2
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13458
13459
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-21
BG293LV06-22
Sample #
25
26
Sample Name
CNOT2-BG293LV06-21
CNOT2-BG293LV06-22
Sample_Name_Alias
Index Well Position
A04
B04
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
287
289
Peak_Molarity
75.10
98.60
libSampleQC_DNA_Well
DNA_Library_set71/set1/A4.png
DNA_Library_set71/set1/B4.png
RIN
10.0
10.0
libSample_RNA_Well
RNA_Library_set71/set1/A4.png
RNA_Library_set71/set1/B4.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-21
BG293LV06-22
RBP
CNOT2
CNOT2
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4450
4451
Sequencing Information
BG293LV06-21
BG293LV06-22
Sample_ID
BG293LV06-21
BG293LV06-22
Sample Name
CNOT2-BG293LV06-21
CNOT2-BG293LV06-22
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
27,957,605
27,889,486
total_aligned_reads
24,368,012
25,545,339
unique_aligned_reads
22,683,340
23,900,768
percent_uniqueAligned
0.81135
0.85698
correlation_replicates
0.974899
0.974899
spikein_reads
100,702
82,488
percent_spikeins
0.00360
0.00296
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3019
3020
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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