CNOT2      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-21BG293LV06-22
idx00
TRCN#_or_BGC#TRCN0000234898TRCN0000234898
shRNA_or_gRNA_sequenceCCGGATGAATGGAGGAGACGTATTACTCGAGTAATACGTCTCCTCCATTCATTTTTTGCCGGATGAATGGAGGAGACGTATTACTCGAGTAATACGTCTCCTCCATTCATTTTTTG
PAM
NameCNOT2CNOT2
Sample_IDBG293LV06-21BG293LV06-22
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameCNOT2CNOT2
qPCR_result88.084.2
Ave_qPCR86.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1010810109




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-21BG293LV06-22
Sample_IDBG293LV06-21BG293LV06-22
Sample Name
Sample NameCNOT2-BG293LV06-21CNOT2-BG293LV06-22
RBPCNOT2CNOT2
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1345813459




Library-Prep Information
BG293LV06-21BG293LV06-22
Sample #2526
Sample NameCNOT2-BG293LV06-21CNOT2-BG293LV06-22
Sample_Name_Alias
Index Well PositionA04B04
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp287289
Peak_Molarity75.1098.60
libSampleQC_DNA_WellDNA_Library_set71/set1/A4.pngDNA_Library_set71/set1/B4.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/A4.pngRNA_Library_set71/set1/B4.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-21BG293LV06-22
RBPCNOT2CNOT2
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44504451




Sequencing Information
BG293LV06-21BG293LV06-22
Sample_IDBG293LV06-21BG293LV06-22
Sample NameCNOT2-BG293LV06-21CNOT2-BG293LV06-22
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads27,957,60527,889,486
total_aligned_reads24,368,01225,545,339
unique_aligned_reads22,683,34023,900,768
percent_uniqueAligned0.811350.85698
correlation_replicates0.9748990.974899
spikein_reads100,70282,488
percent_spikeins0.003600.00296
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30193020




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database