SRP68      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-53BG293LV06-54
idx00
TRCN#_or_BGC#TRCN0000075078TRCN0000075078
shRNA_or_gRNA_sequenceCCGGCCCAGCAAGTTCCATGATATTCTCGAGAATATCATGGAACTTGCTGGGTTTTTGCCGGCCCAGCAAGTTCCATGATATTCTCGAGAATATCATGGAACTTGCTGGGTTTTTG
PAM
NameSRP68SRP68
Sample_IDBG293LV06-53BG293LV06-54
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameSRP68SRP68
qPCR_result72.264.9
Ave_qPCR68.5
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1014010141




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-53BG293LV06-54
Sample_IDBG293LV06-53BG293LV06-54
Sample Name
Sample NameSRP68-BG293LV06-53SRP68-BG293LV06-54
RBPSRP68SRP68
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1349013491




Library-Prep Information
BG293LV06-53BG293LV06-54
Sample #5556
Sample NameSRP68-BG293LV06-53SRP68-BG293LV06-54
Sample_Name_Alias
Index Well PositionG07H07
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp269267
Peak_Molarity88.5082.90
libSampleQC_DNA_WellDNA_Library_set71/set1/G7.pngDNA_Library_set71/set1/H7.png
RIN9.910.0
libSample_RNA_WellRNA_Library_set71/set1/G7.pngRNA_Library_set71/set1/H7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-53BG293LV06-54
RBPSRP68SRP68
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44804481




Sequencing Information
BG293LV06-53BG293LV06-54
Sample_IDBG293LV06-53BG293LV06-54
Sample NameSRP68-BG293LV06-53SRP68-BG293LV06-54
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads38,441,44341,648,076
total_aligned_reads34,988,95238,244,053
unique_aligned_reads32,854,28435,905,673
percent_uniqueAligned0.854660.86212
correlation_replicates0.9978090.997809
spikein_reads106,500170,840
percent_spikeins0.002770.00410
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30493050




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database