Home
NEWS
Summary
Data Files
Search
FAQ
Admin Login
Top
SRP68
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-53
BG293LV06-54
idx
0
0
TRCN#_or_BGC#
TRCN0000075078
TRCN0000075078
shRNA_or_gRNA_sequence
CCGGCCCAGCAAGTTCCATGATATTCTCGAGAATATCATGGAACTTGCTGGGTTTTTG
CCGGCCCAGCAAGTTCCATGATATTCTCGAGAATATCATGGAACTTGCTGGGTTTTTG
PAM
Name
SRP68
SRP68
Sample_ID
BG293LV06-53
BG293LV06-54
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
SRP68
SRP68
qPCR_result
72.2
64.9
Ave_qPCR
68.5
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10140
10141
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-53
BG293LV06-54
Sample_ID
BG293LV06-53
BG293LV06-54
Sample Name
Sample Name
SRP68-BG293LV06-53
SRP68-BG293LV06-54
RBP
SRP68
SRP68
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13490
13491
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-53
BG293LV06-54
Sample #
55
56
Sample Name
SRP68-BG293LV06-53
SRP68-BG293LV06-54
Sample_Name_Alias
Index Well Position
G07
H07
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
269
267
Peak_Molarity
88.50
82.90
libSampleQC_DNA_Well
DNA_Library_set71/set1/G7.png
DNA_Library_set71/set1/H7.png
RIN
9.9
10.0
libSample_RNA_Well
RNA_Library_set71/set1/G7.png
RNA_Library_set71/set1/H7.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-53
BG293LV06-54
RBP
SRP68
SRP68
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4480
4481
Sequencing Information
BG293LV06-53
BG293LV06-54
Sample_ID
BG293LV06-53
BG293LV06-54
Sample Name
SRP68-BG293LV06-53
SRP68-BG293LV06-54
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
38,441,443
41,648,076
total_aligned_reads
34,988,952
38,244,053
unique_aligned_reads
32,854,284
35,905,673
percent_uniqueAligned
0.85466
0.86212
correlation_replicates
0.997809
0.997809
spikein_reads
106,500
170,840
percent_spikeins
0.00277
0.00410
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3049
3050
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
Back