RBM5      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-49BG293LV06-50
idx00
TRCN#_or_BGC#TRCN0000312602TRCN0000312602
shRNA_or_gRNA_sequenceCCGGACCATCACAGAGAGCGATATTCTCGAGAATATCGCTCTCTGTGATGGTTTTTTGCCGGACCATCACAGAGAGCGATATTCTCGAGAATATCGCTCTCTGTGATGGTTTTTTG
PAM
NameRBM5RBM5
Sample_IDBG293LV06-49BG293LV06-50
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRBM5RBM5
qPCR_result82.681.0
Ave_qPCR81.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1013610137




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-49BG293LV06-50
Sample_IDBG293LV06-49BG293LV06-50
Sample Name
Sample NameRBM5-BG293LV06-49RBM5-BG293LV06-50
RBPRBM5RBM5
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1348613487




Library-Prep Information
BG293LV06-49BG293LV06-50
Sample #5152
Sample NameRBM5-BG293LV06-49RBM5-BG293LV06-50
Sample_Name_Alias
Index Well PositionC07D07
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp273280
Peak_Molarity91.00101.00
libSampleQC_DNA_WellDNA_Library_set71/set1/C7.pngDNA_Library_set71/set1/D7.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/C7.pngRNA_Library_set71/set1/D7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-49BG293LV06-50
RBPRBM5RBM5
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44764477




Sequencing Information
BG293LV06-49BG293LV06-50
Sample_IDBG293LV06-49BG293LV06-50
Sample NameRBM5-BG293LV06-49RBM5-BG293LV06-50
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads46,024,70336,199,365
total_aligned_reads41,308,15432,818,437
unique_aligned_reads38,352,44830,561,184
percent_uniqueAligned0.833300.84425
correlation_replicates0.9975060.997506
spikein_reads131,466100,934
percent_spikeins0.002860.00279
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30453046




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database