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ZMAT3
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-79
BG293LV06-80
idx
0
0
TRCN#_or_BGC#
TRCN0000128165
TRCN0000128165
shRNA_or_gRNA_sequence
CCGGCATGGTAAGAAACTCCGAAATCTCGAGATTTCGGAGTTTCTTACCATGTTTTTTG
CCGGCATGGTAAGAAACTCCGAAATCTCGAGATTTCGGAGTTTCTTACCATGTTTTTTG
PAM
Name
ZMAT3
ZMAT3
Sample_ID
BG293LV06-79
BG293LV06-80
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
ZMAT3
ZMAT3
qPCR_result
90.4
86.6
Ave_qPCR
88.5
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10166
10167
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-79
BG293LV06-80
Sample_ID
BG293LV06-79
BG293LV06-80
Sample Name
Sample Name
ZMAT3-BG293LV06-79B
ZMAT3-BG293LV06-80B
RBP
ZMAT3
ZMAT3
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13516
13517
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-79
BG293LV06-80
Sample #
79
80
Sample Name
ZMAT3-BG293LV06-79B
ZMAT3-BG293LV06-80B
Sample_Name_Alias
Index Well Position
G03
H03
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
283
274
Peak_Molarity
61.30
63.50
libSampleQC_DNA_Well
DNA_Library_set72/set1/G3.png
DNA_Library_set72/set1/H3.png
RIN
9.7
9.7
libSample_RNA_Well
RNA_Library_set72/set1/G3.png
RNA_Library_set72/set1/H3.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-79
BG293LV06-80
RBP
ZMAT3
ZMAT3
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4504
4505
Sequencing Information
BG293LV06-79
BG293LV06-80
Sample_ID
BG293LV06-79
BG293LV06-80
Sample Name
ZMAT3-BG293LV06-79B
ZMAT3-BG293LV06-80B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
36,343,510
42,345,053
total_aligned_reads
32,414,513
37,944,059
unique_aligned_reads
30,302,739
35,359,439
percent_uniqueAligned
0.83379
0.83503
correlation_replicates
0.993497
0.993497
spikein_reads
126,138
230,818
percent_spikeins
0.00347
0.00545
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3073
3074
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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