ZMAT3      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-79BG293LV06-80
idx00
TRCN#_or_BGC#TRCN0000128165TRCN0000128165
shRNA_or_gRNA_sequenceCCGGCATGGTAAGAAACTCCGAAATCTCGAGATTTCGGAGTTTCTTACCATGTTTTTTGCCGGCATGGTAAGAAACTCCGAAATCTCGAGATTTCGGAGTTTCTTACCATGTTTTTTG
PAM
NameZMAT3ZMAT3
Sample_IDBG293LV06-79BG293LV06-80
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameZMAT3ZMAT3
qPCR_result90.486.6
Ave_qPCR88.5
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1016610167




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-79BG293LV06-80
Sample_IDBG293LV06-79BG293LV06-80
Sample Name
Sample NameZMAT3-BG293LV06-79BZMAT3-BG293LV06-80B
RBPZMAT3ZMAT3
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1351613517




Library-Prep Information
BG293LV06-79BG293LV06-80
Sample #7980
Sample NameZMAT3-BG293LV06-79BZMAT3-BG293LV06-80B
Sample_Name_Alias
Index Well PositionG03H03
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp283274
Peak_Molarity61.3063.50
libSampleQC_DNA_WellDNA_Library_set72/set1/G3.pngDNA_Library_set72/set1/H3.png
RIN9.79.7
libSample_RNA_WellRNA_Library_set72/set1/G3.pngRNA_Library_set72/set1/H3.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-79BG293LV06-80
RBPZMAT3ZMAT3
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45044505




Sequencing Information
BG293LV06-79BG293LV06-80
Sample_IDBG293LV06-79BG293LV06-80
Sample NameZMAT3-BG293LV06-79BZMAT3-BG293LV06-80B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads36,343,51042,345,053
total_aligned_reads32,414,51337,944,059
unique_aligned_reads30,302,73935,359,439
percent_uniqueAligned0.833790.83503
correlation_replicates0.9934970.993497
spikein_reads126,138230,818
percent_spikeins0.003470.00545
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30733074




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database