CNOT4      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-95BG293LV06-96
idx00
TRCN#_or_BGC#TRCN0000015215TRCN0000015215
shRNA_or_gRNA_sequenceGCCTCTTCACATCAGAAACAACTCGAGTTGTTTCTGATGTGAAGAGGCGCCTCTTCACATCAGAAACAACTCGAGTTGTTTCTGATGTGAAGAGGC
PAM
NameCNOT4CNOT4
Sample_IDBG293LV06-95BG293LV06-96
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameCNOT4CNOT4
qPCR_result83.680.6
Ave_qPCR82.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1018210183




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-95BG293LV06-96
Sample_IDBG293LV06-95BG293LV06-96
Sample Name
Sample NameCNOT4-BG293LV06-95BCNOT4-BG293LV06-96B
RBPCNOT4CNOT4
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1353213533




Library-Prep Information
BG293LV06-95BG293LV06-96
Sample #9596
Sample NameCNOT4-BG293LV06-95BCNOT4-BG293LV06-96B
Sample_Name_Alias
Index Well PositionG05H05
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp276279
Peak_Molarity86.9062.10
libSampleQC_DNA_WellDNA_Library_set72/set1/G5.pngDNA_Library_set72/set1/H5.png
RIN9.69.7
libSample_RNA_WellRNA_Library_set72/set1/G5.pngRNA_Library_set72/set1/H5.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-95BG293LV06-96
RBPCNOT4CNOT4
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45204521




Sequencing Information
BG293LV06-95BG293LV06-96
Sample_IDBG293LV06-95BG293LV06-96
Sample NameCNOT4-BG293LV06-95BCNOT4-BG293LV06-96B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads24,330,50432,222,897
total_aligned_reads22,143,35429,312,442
unique_aligned_reads20,872,57827,586,072
percent_uniqueAligned0.857880.85610
correlation_replicates0.9966920.996692
spikein_reads94,104155,546
percent_spikeins0.003870.00483
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30893090




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database