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CNOT4
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-95
BG293LV06-96
idx
0
0
TRCN#_or_BGC#
TRCN0000015215
TRCN0000015215
shRNA_or_gRNA_sequence
GCCTCTTCACATCAGAAACAACTCGAGTTGTTTCTGATGTGAAGAGGC
GCCTCTTCACATCAGAAACAACTCGAGTTGTTTCTGATGTGAAGAGGC
PAM
Name
CNOT4
CNOT4
Sample_ID
BG293LV06-95
BG293LV06-96
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
CNOT4
CNOT4
qPCR_result
83.6
80.6
Ave_qPCR
82.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10182
10183
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-95
BG293LV06-96
Sample_ID
BG293LV06-95
BG293LV06-96
Sample Name
Sample Name
CNOT4-BG293LV06-95B
CNOT4-BG293LV06-96B
RBP
CNOT4
CNOT4
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13532
13533
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-95
BG293LV06-96
Sample #
95
96
Sample Name
CNOT4-BG293LV06-95B
CNOT4-BG293LV06-96B
Sample_Name_Alias
Index Well Position
G05
H05
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
276
279
Peak_Molarity
86.90
62.10
libSampleQC_DNA_Well
DNA_Library_set72/set1/G5.png
DNA_Library_set72/set1/H5.png
RIN
9.6
9.7
libSample_RNA_Well
RNA_Library_set72/set1/G5.png
RNA_Library_set72/set1/H5.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-95
BG293LV06-96
RBP
CNOT4
CNOT4
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4520
4521
Sequencing Information
BG293LV06-95
BG293LV06-96
Sample_ID
BG293LV06-95
BG293LV06-96
Sample Name
CNOT4-BG293LV06-95B
CNOT4-BG293LV06-96B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
24,330,504
32,222,897
total_aligned_reads
22,143,354
29,312,442
unique_aligned_reads
20,872,578
27,586,072
percent_uniqueAligned
0.85788
0.85610
correlation_replicates
0.996692
0.996692
spikein_reads
94,104
155,546
percent_spikeins
0.00387
0.00483
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3089
3090
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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