Home
NEWS
Summary
Data Files
Search
FAQ
Admin Login
Top
TPD52L2
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-83
BG293LV06-84
idx
0
0
TRCN#_or_BGC#
TRCN0000166214
TRCN0000166214
shRNA_or_gRNA_sequence
CCGGCTTGGAGACATGAGGAACTCTCTCGAGAGAGTTCCTCATGTCTCCAAGTTTTTTG
CCGGCTTGGAGACATGAGGAACTCTCTCGAGAGAGTTCCTCATGTCTCCAAGTTTTTTG
PAM
Name
TPD52L2
TPD52L2
Sample_ID
BG293LV06-83
BG293LV06-84
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
TPD52L2
TPD52L2
qPCR_result
67.1
72.3
Ave_qPCR
69.7
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10170
10171
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-83
BG293LV06-84
Sample_ID
BG293LV06-83
BG293LV06-84
Sample Name
Sample Name
TPD52L2-BG293LV06-83B
TPD52L2-BG293LV06-84B
RBP
TPD52L2
TPD52L2
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13520
13521
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-83
BG293LV06-84
Sample #
83
84
Sample Name
TPD52L2-BG293LV06-83B
TPD52L2-BG293LV06-84B
Sample_Name_Alias
Index Well Position
C04
D04
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
285
286
Peak_Molarity
89.00
92.10
libSampleQC_DNA_Well
DNA_Library_set72/set1/C4.png
DNA_Library_set72/set1/D4.png
RIN
9.9
10.0
libSample_RNA_Well
RNA_Library_set72/set1/C4.png
RNA_Library_set72/set1/D4.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-83
BG293LV06-84
RBP
TPD52L2
TPD52L2
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4508
4509
Sequencing Information
BG293LV06-83
BG293LV06-84
Sample_ID
BG293LV06-83
BG293LV06-84
Sample Name
TPD52L2-BG293LV06-83B
TPD52L2-BG293LV06-84B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
53,688,736
43,168,243
total_aligned_reads
49,969,305
39,486,670
unique_aligned_reads
46,987,237
37,111,394
percent_uniqueAligned
0.87518
0.85969
correlation_replicates
0.977742
0.977742
spikein_reads
240,152
168,912
percent_spikeins
0.00447
0.00391
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3077
3078
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
Back