TPD52L2      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-83BG293LV06-84
idx00
TRCN#_or_BGC#TRCN0000166214TRCN0000166214
shRNA_or_gRNA_sequenceCCGGCTTGGAGACATGAGGAACTCTCTCGAGAGAGTTCCTCATGTCTCCAAGTTTTTTGCCGGCTTGGAGACATGAGGAACTCTCTCGAGAGAGTTCCTCATGTCTCCAAGTTTTTTG
PAM
NameTPD52L2TPD52L2
Sample_IDBG293LV06-83BG293LV06-84
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameTPD52L2TPD52L2
qPCR_result67.172.3
Ave_qPCR69.7
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1017010171




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-83BG293LV06-84
Sample_IDBG293LV06-83BG293LV06-84
Sample Name
Sample NameTPD52L2-BG293LV06-83BTPD52L2-BG293LV06-84B
RBPTPD52L2TPD52L2
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1352013521




Library-Prep Information
BG293LV06-83BG293LV06-84
Sample #8384
Sample NameTPD52L2-BG293LV06-83BTPD52L2-BG293LV06-84B
Sample_Name_Alias
Index Well PositionC04D04
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp285286
Peak_Molarity89.0092.10
libSampleQC_DNA_WellDNA_Library_set72/set1/C4.pngDNA_Library_set72/set1/D4.png
RIN9.910.0
libSample_RNA_WellRNA_Library_set72/set1/C4.pngRNA_Library_set72/set1/D4.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-83BG293LV06-84
RBPTPD52L2TPD52L2
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45084509




Sequencing Information
BG293LV06-83BG293LV06-84
Sample_IDBG293LV06-83BG293LV06-84
Sample NameTPD52L2-BG293LV06-83BTPD52L2-BG293LV06-84B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads53,688,73643,168,243
total_aligned_reads49,969,30539,486,670
unique_aligned_reads46,987,23737,111,394
percent_uniqueAligned0.875180.85969
correlation_replicates0.9777420.977742
spikein_reads240,152168,912
percent_spikeins0.004470.00391
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30773078




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database