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LSM1
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-61
BG293LV06-62
idx
0
0
TRCN#_or_BGC#
TRCN0000040228
TRCN0000040228
shRNA_or_gRNA_sequence
CCGGGAGCGTATTCATGTGGGCAAACTCGAGTTTGCCCACATGAATACGCTCTTTTTG
CCGGGAGCGTATTCATGTGGGCAAACTCGAGTTTGCCCACATGAATACGCTCTTTTTG
PAM
Name
LSM1
LSM1
Sample_ID
BG293LV06-61
BG293LV06-62
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
LSM1
LSM1
qPCR_result
54.7
77.5
Ave_qPCR
66.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10148
10149
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-61
BG293LV06-62
Sample_ID
BG293LV06-61
BG293LV06-62
Sample Name
Sample Name
LSM1-BG293LV06-61
LSM1-BG293LV06-62
RBP
LSM1
LSM1
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13498
13499
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-61
BG293LV06-62
Sample #
63
64
Sample Name
LSM1-BG293LV06-61
LSM1-BG293LV06-62
Sample_Name_Alias
Index Well Position
G08
H08
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
276
281
Peak_Molarity
81.20
56.30
libSampleQC_DNA_Well
DNA_Library_set71/set1/G8.png
DNA_Library_set71/set1/H8.png
RIN
10.0
9.9
libSample_RNA_Well
RNA_Library_set71/set1/G8.png
RNA_Library_set71/set1/H8.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-61
BG293LV06-62
RBP
LSM1
LSM1
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4488
4489
Sequencing Information
BG293LV06-61
BG293LV06-62
Sample_ID
BG293LV06-61
BG293LV06-62
Sample Name
LSM1-BG293LV06-61
LSM1-BG293LV06-62
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
44,330,038
47,016,212
total_aligned_reads
41,174,335
43,626,128
unique_aligned_reads
38,545,443
40,829,409
percent_uniqueAligned
0.86951
0.86841
correlation_replicates
0.943409
0.943409
spikein_reads
86,250
182,956
percent_spikeins
0.00195
0.00389
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3057
3058
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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