LSM1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-61BG293LV06-62
idx00
TRCN#_or_BGC#TRCN0000040228TRCN0000040228
shRNA_or_gRNA_sequenceCCGGGAGCGTATTCATGTGGGCAAACTCGAGTTTGCCCACATGAATACGCTCTTTTTGCCGGGAGCGTATTCATGTGGGCAAACTCGAGTTTGCCCACATGAATACGCTCTTTTTG
PAM
NameLSM1LSM1
Sample_IDBG293LV06-61BG293LV06-62
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameLSM1LSM1
qPCR_result54.777.5
Ave_qPCR66.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1014810149




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-61BG293LV06-62
Sample_IDBG293LV06-61BG293LV06-62
Sample Name
Sample NameLSM1-BG293LV06-61LSM1-BG293LV06-62
RBPLSM1LSM1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1349813499




Library-Prep Information
BG293LV06-61BG293LV06-62
Sample #6364
Sample NameLSM1-BG293LV06-61LSM1-BG293LV06-62
Sample_Name_Alias
Index Well PositionG08H08
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp276281
Peak_Molarity81.2056.30
libSampleQC_DNA_WellDNA_Library_set71/set1/G8.pngDNA_Library_set71/set1/H8.png
RIN10.09.9
libSample_RNA_WellRNA_Library_set71/set1/G8.pngRNA_Library_set71/set1/H8.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-61BG293LV06-62
RBPLSM1LSM1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44884489




Sequencing Information
BG293LV06-61BG293LV06-62
Sample_IDBG293LV06-61BG293LV06-62
Sample NameLSM1-BG293LV06-61LSM1-BG293LV06-62
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads44,330,03847,016,212
total_aligned_reads41,174,33543,626,128
unique_aligned_reads38,545,44340,829,409
percent_uniqueAligned0.869510.86841
correlation_replicates0.9434090.943409
spikein_reads86,250182,956
percent_spikeins0.001950.00389
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30573058




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database