GRB2      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-7BG293LV06-8
idx00
TRCN#_or_BGC#TRCN0000029369TRCN0000029369
shRNA_or_gRNA_sequenceCCGGGCAGAAGAAATGCTTAGCAAACTCGAGTTTGCTAAGCATTTCTTCTGCTTTTTCCGGGCAGAAGAAATGCTTAGCAAACTCGAGTTTGCTAAGCATTTCTTCTGCTTTTT
PAM
NameGRB2GRB2
Sample_IDBG293LV06-7BG293LV06-8
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameGRB2GRB2
qPCR_result64.953.6
Ave_qPCR59.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1009410095




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-7BG293LV06-8
Sample_IDBG293LV06-7BG293LV06-8
Sample Name
Sample NameGRB2-BG293LV06-7GRB2-BG293LV06-8
RBPGRB2GRB2
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1344413445




Library-Prep Information
BG293LV06-7BG293LV06-8
Sample #1112
Sample NameGRB2-BG293LV06-7GRB2-BG293LV06-8
Sample_Name_Alias
Index Well PositionC02D02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp298298
Peak_Molarity88.8091.90
libSampleQC_DNA_WellDNA_Library_set71/set1/C2.pngDNA_Library_set71/set1/D2.png
RIN10.09.9
libSample_RNA_WellRNA_Library_set71/set1/C2.pngRNA_Library_set71/set1/D2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-7BG293LV06-8
RBPGRB2GRB2
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44364437




Sequencing Information
BG293LV06-7BG293LV06-8
Sample_IDBG293LV06-7BG293LV06-8
Sample NameGRB2-BG293LV06-7GRB2-BG293LV06-8
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads27,074,96430,502,103
total_aligned_reads24,875,73327,768,484
unique_aligned_reads23,339,97626,024,753
percent_uniqueAligned0.862050.85321
correlation_replicates0.9887590.988759
spikein_reads78,934103,282
percent_spikeins0.002920.00339
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30053006




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database