SCAF8      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-51BG293LV06-52
idx00
TRCN#_or_BGC#TRCN0000156141TRCN0000156141
shRNA_or_gRNA_sequenceCCGGCGACATCAGTTTGGTCAAGAACTCGAGTTCTTGACCAAACTGATGTCGTTTTTTGCCGGCGACATCAGTTTGGTCAAGAACTCGAGTTCTTGACCAAACTGATGTCGTTTTTTG
PAM
NameSCAF8SCAF8
Sample_IDBG293LV06-51BG293LV06-52
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameSCAF8SCAF8
qPCR_result46.763.8
Ave_qPCR55.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1013810139




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-51BG293LV06-52
Sample_IDBG293LV06-51BG293LV06-52
Sample Name
Sample NameSCAF8-BG293LV06-51SCAF8-BG293LV06-52
RBPSCAF8SCAF8
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1348813489




Library-Prep Information
BG293LV06-51BG293LV06-52
Sample #5354
Sample NameSCAF8-BG293LV06-51SCAF8-BG293LV06-52
Sample_Name_Alias
Index Well PositionE07F07
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp276278
Peak_Molarity89.2095.40
libSampleQC_DNA_WellDNA_Library_set71/set1/E7.pngDNA_Library_set71/set1/F7.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/E7.pngRNA_Library_set71/set1/F7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-51BG293LV06-52
RBPSCAF8SCAF8
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44784479




Sequencing Information
BG293LV06-51BG293LV06-52
Sample_IDBG293LV06-51BG293LV06-52
Sample NameSCAF8-BG293LV06-51SCAF8-BG293LV06-52
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads39,851,97833,962,299
total_aligned_reads36,034,46231,368,897
unique_aligned_reads33,622,73529,245,067
percent_uniqueAligned0.843690.86110
correlation_replicates0.9918580.991858
spikein_reads70,75871,810
percent_spikeins0.001780.00211
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30473048




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database