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FUBP1
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-99
BG293LV06-100
idx
0
0
TRCN#_or_BGC#
TRCN0000013293
TRCN0000013293
shRNA_or_gRNA_sequence
CCGGCGACTTGATGAAGATCTTAATCTCGAGATTAAGATCTTCATCAAGTCGTTTTT
CCGGCGACTTGATGAAGATCTTAATCTCGAGATTAAGATCTTCATCAAGTCGTTTTT
PAM
Name
FUBP1
FUBP1
Sample_ID
BG293LV06-99
BG293LV06-100
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
FUBP1
FUBP1
qPCR_result
80.6
82.7
Ave_qPCR
81.7
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10186
10187
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-99
BG293LV06-100
Sample_ID
BG293LV06-99
BG293LV06-100
Sample Name
Sample Name
FUBP1-BG293LV06-99B
FUBP1-BG293LV06-100B
RBP
FUBP1
FUBP1
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13536
13537
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-99
BG293LV06-100
Sample #
99
100
Sample Name
FUBP1-BG293LV06-99B
FUBP1-BG293LV06-100B
Sample_Name_Alias
Index Well Position
C06
D06
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
278
296
Peak_Molarity
101.00
67.60
libSampleQC_DNA_Well
DNA_Library_set72/set1/C6.png
DNA_Library_set72/set1/D6.png
RIN
10.0
10.0
libSample_RNA_Well
RNA_Library_set72/set1/C6.png
RNA_Library_set72/set1/D6.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-99
BG293LV06-100
RBP
FUBP1
FUBP1
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4524
4525
Sequencing Information
BG293LV06-99
BG293LV06-100
Sample_ID
BG293LV06-99
BG293LV06-100
Sample Name
FUBP1-BG293LV06-99B
FUBP1-BG293LV06-100B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
39,784,524
34,225,981
total_aligned_reads
37,022,988
32,156,428
unique_aligned_reads
34,140,165
30,309,806
percent_uniqueAligned
0.85813
0.88558
correlation_replicates
0.964428
0.964428
spikein_reads
166,740
130,226
percent_spikeins
0.00419
0.00380
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3093
3094
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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