FUBP1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-99BG293LV06-100
idx00
TRCN#_or_BGC#TRCN0000013293TRCN0000013293
shRNA_or_gRNA_sequenceCCGGCGACTTGATGAAGATCTTAATCTCGAGATTAAGATCTTCATCAAGTCGTTTTTCCGGCGACTTGATGAAGATCTTAATCTCGAGATTAAGATCTTCATCAAGTCGTTTTT
PAM
NameFUBP1FUBP1
Sample_IDBG293LV06-99BG293LV06-100
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameFUBP1FUBP1
qPCR_result80.682.7
Ave_qPCR81.7
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1018610187




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-99BG293LV06-100
Sample_IDBG293LV06-99BG293LV06-100
Sample Name
Sample NameFUBP1-BG293LV06-99BFUBP1-BG293LV06-100B
RBPFUBP1FUBP1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1353613537




Library-Prep Information
BG293LV06-99BG293LV06-100
Sample #99100
Sample NameFUBP1-BG293LV06-99BFUBP1-BG293LV06-100B
Sample_Name_Alias
Index Well PositionC06D06
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp278296
Peak_Molarity101.0067.60
libSampleQC_DNA_WellDNA_Library_set72/set1/C6.pngDNA_Library_set72/set1/D6.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set72/set1/C6.pngRNA_Library_set72/set1/D6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-99BG293LV06-100
RBPFUBP1FUBP1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45244525




Sequencing Information
BG293LV06-99BG293LV06-100
Sample_IDBG293LV06-99BG293LV06-100
Sample NameFUBP1-BG293LV06-99BFUBP1-BG293LV06-100B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads39,784,52434,225,981
total_aligned_reads37,022,98832,156,428
unique_aligned_reads34,140,16530,309,806
percent_uniqueAligned0.858130.88558
correlation_replicates0.9644280.964428
spikein_reads166,740130,226
percent_spikeins0.004190.00380
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30933094




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database