UBE2I      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-33BG293LV06-34
idx00
TRCN#_or_BGC#TRCN0000320448TRCN0000320448
shRNA_or_gRNA_sequenceCCGGAGCAGAGGCCTACACGATTTACTCGAGTAAATCGTGTAGGCCTCTGCTTTTTTGCCGGAGCAGAGGCCTACACGATTTACTCGAGTAAATCGTGTAGGCCTCTGCTTTTTTG
PAM
NameUBE2IUBE2I
Sample_IDBG293LV06-33BG293LV06-34
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameUBE2IUBE2I
qPCR_result85.784.7
Ave_qPCR85.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1012010121




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-33BG293LV06-34
Sample_IDBG293LV06-33BG293LV06-34
Sample Name
Sample NameUBE2I-BG293LV06-33UBE2I-BG293LV06-34
RBPUBE2IUBE2I
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1347013471




Library-Prep Information
BG293LV06-33BG293LV06-34
Sample #3738
Sample NameUBE2I-BG293LV06-33UBE2I-BG293LV06-34
Sample_Name_Alias
Index Well PositionE05F05
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp280276
Peak_Molarity92.6090.80
libSampleQC_DNA_WellDNA_Library_set71/set1/E5.pngDNA_Library_set71/set1/F5.png
RIN9.99.8
libSample_RNA_WellRNA_Library_set71/set1/E5.pngRNA_Library_set71/set1/F5.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-33BG293LV06-34
RBPUBE2IUBE2I
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44624463




Sequencing Information
BG293LV06-33BG293LV06-34
Sample_IDBG293LV06-33BG293LV06-34
Sample NameUBE2I-BG293LV06-33UBE2I-BG293LV06-34
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads39,086,36833,615,326
total_aligned_reads36,017,34729,582,291
unique_aligned_reads33,737,19727,728,675
percent_uniqueAligned0.863140.82488
correlation_replicates0.9985400.998540
spikein_reads72,10063,524
percent_spikeins0.001840.00189
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30313032




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database