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UBE2I
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-33
BG293LV06-34
idx
0
0
TRCN#_or_BGC#
TRCN0000320448
TRCN0000320448
shRNA_or_gRNA_sequence
CCGGAGCAGAGGCCTACACGATTTACTCGAGTAAATCGTGTAGGCCTCTGCTTTTTTG
CCGGAGCAGAGGCCTACACGATTTACTCGAGTAAATCGTGTAGGCCTCTGCTTTTTTG
PAM
Name
UBE2I
UBE2I
Sample_ID
BG293LV06-33
BG293LV06-34
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
UBE2I
UBE2I
qPCR_result
85.7
84.7
Ave_qPCR
85.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10120
10121
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-33
BG293LV06-34
Sample_ID
BG293LV06-33
BG293LV06-34
Sample Name
Sample Name
UBE2I-BG293LV06-33
UBE2I-BG293LV06-34
RBP
UBE2I
UBE2I
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13470
13471
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-33
BG293LV06-34
Sample #
37
38
Sample Name
UBE2I-BG293LV06-33
UBE2I-BG293LV06-34
Sample_Name_Alias
Index Well Position
E05
F05
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
280
276
Peak_Molarity
92.60
90.80
libSampleQC_DNA_Well
DNA_Library_set71/set1/E5.png
DNA_Library_set71/set1/F5.png
RIN
9.9
9.8
libSample_RNA_Well
RNA_Library_set71/set1/E5.png
RNA_Library_set71/set1/F5.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-33
BG293LV06-34
RBP
UBE2I
UBE2I
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4462
4463
Sequencing Information
BG293LV06-33
BG293LV06-34
Sample_ID
BG293LV06-33
BG293LV06-34
Sample Name
UBE2I-BG293LV06-33
UBE2I-BG293LV06-34
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
39,086,368
33,615,326
total_aligned_reads
36,017,347
29,582,291
unique_aligned_reads
33,737,197
27,728,675
percent_uniqueAligned
0.86314
0.82488
correlation_replicates
0.998540
0.998540
spikein_reads
72,100
63,524
percent_spikeins
0.00184
0.00189
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3031
3032
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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